Wall clock time and date at job start Tue Mar 31 2020 14:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 108.89815 * 2 1 4 4 C 1.54066 * 108.91722 * 118.56719 * 2 1 3 5 5 N 1.44277 * 111.98172 * 161.80653 * 4 2 1 6 6 C 1.47801 * 109.46266 * 263.56448 * 5 4 2 7 7 C 1.45873 * 112.91620 * 83.25736 * 6 5 4 8 8 C 1.54504 * 111.59054 * 298.67407 * 7 6 5 9 9 C 1.50459 * 108.85178 * 77.19374 * 8 7 6 10 10 H 1.08993 * 108.77095 * 28.64586 * 9 8 7 11 11 C 1.53005 * 108.77035 * 146.92826 * 9 8 7 12 12 N 1.46503 * 109.46814 * 294.99950 * 11 9 8 13 13 C 1.38402 * 119.99898 * 180.02562 * 12 11 9 14 14 N 1.32750 * 119.43963 * 359.72241 * 13 12 11 15 15 C 1.31465 * 121.74415 * 179.70801 * 14 13 12 16 16 C 1.40794 * 120.38629 * 0.56656 * 15 14 13 17 17 C 1.41195 * 120.56407 * 179.74620 * 16 15 14 18 18 H 1.07996 * 120.00195 * 23.63974 * 17 16 15 19 19 C 1.39866 * 119.99779 * 203.64362 * 17 16 15 20 20 N 1.30904 * 120.00228 * 17.65047 * 19 17 16 21 21 Si 1.86806 * 119.99805 * 197.64525 * 19 17 16 22 22 H 1.48501 * 109.46844 * 90.00439 * 21 19 17 23 23 H 1.48496 * 109.47168 * 209.99686 * 21 19 17 24 24 H 1.48490 * 109.47269 * 330.00326 * 21 19 17 25 25 C 1.41281 * 118.87146 * 359.72711 * 16 15 14 26 26 C 1.36670 * 118.39978 * 359.97438 * 25 16 15 27 27 Cl 1.73603 * 120.26166 * 180.02562 * 26 25 16 28 28 H 1.08996 * 109.47097 * 178.65964 * 1 2 3 29 29 H 1.09003 * 109.46788 * 298.66024 * 1 2 3 30 30 H 1.09004 * 109.47260 * 58.65669 * 1 2 3 31 31 H 1.08998 * 108.98228 * 282.45575 * 4 2 1 32 32 H 1.09000 * 108.97979 * 41.24873 * 4 2 1 33 33 H 1.00896 * 110.99534 * 26.43566 * 5 4 2 34 34 H 1.08998 * 108.79675 * 322.37791 * 6 5 4 35 35 H 1.09001 * 108.79455 * 204.14280 * 6 5 4 36 36 H 1.08998 * 109.05561 * 178.12698 * 7 6 5 37 37 H 1.09000 * 109.05276 * 59.21678 * 7 6 5 38 38 H 1.09005 * 109.56845 * 197.00531 * 8 7 6 39 39 H 1.08997 * 109.57392 * 317.25216 * 8 7 6 40 40 H 1.08998 * 109.46971 * 54.99311 * 11 9 8 41 41 H 1.08995 * 109.47481 * 174.99851 * 11 9 8 42 42 H 0.97000 * 120.00285 * 0.02562 * 12 11 9 43 43 H 1.08001 * 119.81035 * 180.26706 * 15 14 13 44 44 H 0.97004 * 119.99929 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.80207 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8830 1.0313 0.0000 4 6 2.0295 -0.6969 1.2800 5 7 3.4069 -1.1111 1.1670 6 6 3.4625 -2.5329 0.7674 7 6 3.3294 -2.7238 -0.6727 8 6 1.9717 -2.2009 -1.1924 9 6 2.0303 -0.7000 -1.2807 10 1 3.0620 -0.3994 -1.4627 11 6 1.1697 -0.2422 -2.4601 12 7 1.7529 -0.7351 -3.7104 13 6 1.1450 -0.4446 -4.9193 14 7 0.0308 0.2769 -4.9326 15 6 -0.5810 0.5842 -6.0550 16 6 -0.0698 0.1400 -7.2894 17 6 -0.7267 0.4633 -8.4967 18 1 -1.3697 1.3296 -8.5464 19 6 -0.5448 -0.3385 -9.6282 20 7 -0.0663 -1.5503 -9.5017 21 14 -0.9849 0.3201 -11.3200 22 1 0.1989 0.9930 -11.9125 23 1 -1.4046 -0.8040 -12.1949 24 1 -2.0985 1.2946 -11.1976 25 6 1.1118 -0.6344 -7.2995 26 6 1.7118 -0.9205 -6.1053 27 17 3.1660 -1.8677 -6.0615 28 1 -0.3633 -1.0273 -0.0240 29 1 -0.3633 0.4929 0.9018 30 1 -0.3634 0.5346 -0.8777 31 1 1.9341 -0.0079 2.1191 32 1 1.4113 -1.5743 1.4702 33 1 3.9061 -0.5309 0.5096 34 1 2.6575 -3.0703 1.2686 35 1 4.4156 -2.9515 1.0905 36 1 3.4121 -3.7866 -0.8999 37 1 4.1338 -2.1894 -1.1782 38 1 1.7739 -2.6174 -2.1801 39 1 1.1790 -2.4975 -0.5056 40 1 0.1605 -0.6387 -2.3489 41 1 1.1320 0.8468 -2.4813 42 1 2.5651 -1.2651 -3.6910 43 1 -1.4835 1.1768 -6.0297 44 1 0.0595 -2.1065 -10.2864 45 1 1.5309 -0.9917 -8.2285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155031070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:36 Heat of formation + Delta-G solvation = -5.280118 kcal Electronic energy + Delta-G solvation = -25301.563493 eV Core-core repulsion = 21763.816101 eV Total energy + Delta-G solvation = -3537.747392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01333 -40.33348 -37.34108 -37.11764 -35.77384 -34.69477 -33.62427 -32.37741 -31.08831 -29.13673 -27.81850 -26.44368 -24.81921 -24.49025 -23.29277 -22.61857 -22.22229 -19.72984 -19.30891 -18.34339 -17.65557 -16.97487 -16.56012 -16.54354 -16.06627 -15.94775 -15.78467 -15.35622 -14.94744 -14.69852 -14.48204 -14.11189 -13.84873 -13.61900 -13.55361 -13.33747 -13.19517 -13.08647 -12.90090 -12.83440 -12.75365 -12.67517 -12.45626 -12.01419 -12.01065 -11.71367 -11.65019 -11.40269 -11.26994 -11.23487 -11.13625 -10.51368 -10.13392 -10.00512 -9.31124 -8.73380 -8.45671 -6.20016 0.63939 0.98203 1.39992 1.42092 1.54016 1.54675 2.22283 2.61613 2.72893 3.46675 3.62258 3.65288 3.67184 3.80046 4.10024 4.16027 4.18889 4.24107 4.44695 4.49687 4.58665 4.63257 4.67524 4.72699 4.74782 4.81810 4.93685 4.96922 5.02435 5.08407 5.13440 5.14543 5.16459 5.23504 5.28702 5.30124 5.32730 5.40492 5.52329 5.78657 5.78948 6.16117 6.32388 6.50995 6.58734 6.74378 6.82754 6.88283 7.71504 8.32757 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.002963 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.780110 B = 9446.088718 C =10328.287354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.073 0.927 4 C 0.066 3.934 5 N -0.678 5.678 6 C 0.054 3.946 7 C -0.146 4.146 8 C -0.115 4.115 9 C -0.084 4.084 10 H 0.070 0.930 11 C 0.157 3.843 12 N -0.731 5.731 13 C 0.292 3.708 14 N -0.510 5.510 15 C 0.007 3.993 16 C 0.011 3.989 17 C -0.482 4.482 18 H 0.086 0.914 19 C 0.034 3.966 20 N -0.830 5.830 21 Si 0.983 3.017 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.256 1.256 25 C -0.104 4.104 26 C -0.116 4.116 27 Cl -0.086 7.086 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.343 0.657 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.402 0.598 43 H 0.147 0.853 44 H 0.288 0.712 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 -1.173 15.147 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.064 4.064 5 N -0.306 5.306 6 C -0.075 4.075 7 C -0.185 4.185 8 C -0.153 4.153 9 C -0.103 4.103 10 H 0.089 0.911 11 C 0.033 3.967 12 N -0.372 5.372 13 C 0.057 3.943 14 N -0.226 5.226 15 C -0.151 4.151 16 C 0.005 3.995 17 C -0.513 4.513 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.457 5.457 21 Si 0.804 3.196 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.179 1.179 25 C -0.132 4.132 26 C -0.148 4.148 27 Cl -0.058 7.058 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.239 0.761 43 H 0.164 0.836 44 H 0.099 0.901 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.171 -1.223 16.647 17.474 hybrid contribution 0.131 -0.422 -2.947 2.980 sum 5.301 -1.645 13.700 14.781 Atomic orbital electron populations 1.21896 0.94855 1.01841 1.02063 1.22142 0.96702 0.99936 0.93844 0.90822 1.21922 0.89064 0.99913 0.95539 1.61133 1.12733 1.03731 1.53015 1.20966 1.02881 0.89849 0.93836 1.21222 0.96768 1.02408 0.98114 1.21456 0.98152 0.94447 1.01216 1.21176 0.99333 0.95843 0.93925 0.91147 1.21139 0.96134 0.97171 0.82299 1.43929 1.30123 1.61308 1.01831 1.17726 0.92720 0.98386 0.85442 1.66836 1.08351 1.15998 1.31446 1.22579 1.00352 1.05545 0.86619 1.18583 0.92161 0.94057 0.94696 1.19594 1.26178 1.11027 0.94472 0.89584 1.26718 0.92780 0.93625 1.04889 1.69857 1.34831 1.07377 1.33590 0.85177 0.79601 0.78866 0.75970 1.18962 1.19660 1.17923 1.21250 0.95111 1.00991 0.95799 1.21013 0.93160 1.05580 0.95093 1.98232 1.36972 1.71986 1.98627 0.92854 0.91360 0.93302 0.90567 0.91610 0.83901 0.91325 0.90514 0.90848 0.91935 0.92888 0.91326 0.93805 0.94386 0.76107 0.83599 0.90095 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.05 71.98 0.58 -2.24 16 2 C -0.11 -1.89 2.53 -10.00 -0.03 -1.91 16 3 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.07 1.03 5.39 87.15 0.47 1.50 16 5 N -0.68 -10.85 6.91 -527.68 -3.65 -14.49 16 6 C 0.05 0.81 5.87 83.94 0.49 1.30 16 7 C -0.15 -2.43 5.36 28.92 0.15 -2.28 16 8 C -0.12 -2.37 4.85 30.28 0.15 -2.22 16 9 C -0.08 -1.79 1.48 -11.18 -0.02 -1.81 16 10 H 0.07 1.49 6.78 -2.39 -0.02 1.47 16 11 C 0.16 4.69 3.63 86.38 0.31 5.00 16 12 N -0.73 -25.87 5.02 -344.74 -1.73 -27.60 16 13 C 0.29 12.97 7.48 133.32 1.00 13.97 16 14 N -0.51 -23.87 9.52 -191.09 -1.82 -25.69 16 15 C 0.01 0.35 10.97 85.37 0.94 1.29 16 16 C 0.01 0.56 5.59 -21.18 -0.12 0.44 16 17 C -0.48 -24.72 9.06 23.39 0.21 -24.51 16 18 H 0.09 4.18 7.90 -2.91 -0.02 4.16 16 19 C 0.03 1.67 5.17 85.23 0.44 2.11 16 20 N -0.83 -42.20 10.92 21.82 0.24 -41.96 16 21 Si 0.98 37.00 29.59 68.60 2.03 39.03 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 25 C -0.10 -5.35 8.53 22.65 0.19 -5.16 16 26 C -0.12 -5.34 6.32 22.28 0.14 -5.20 16 27 Cl -0.09 -3.30 27.56 -2.72 -0.07 -3.37 16 28 H 0.05 1.02 7.39 -2.39 -0.02 1.00 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.11 6.38 -2.38 -0.02 1.10 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.03 6.34 -2.39 -0.02 1.02 16 33 H 0.34 5.42 7.35 -89.70 -0.66 4.76 16 34 H 0.07 1.02 7.24 -2.39 -0.02 1.00 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.06 7.59 -2.39 -0.02 1.05 16 38 H 0.05 1.34 6.84 -2.38 -0.02 1.32 16 39 H 0.07 1.37 6.39 -2.39 -0.02 1.35 16 40 H 0.04 1.44 6.87 -2.39 -0.02 1.42 16 41 H 0.04 1.24 8.02 -2.39 -0.02 1.22 16 42 H 0.40 13.04 6.54 -92.71 -0.61 12.43 16 43 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 44 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 45 H 0.12 6.67 6.19 -2.91 -0.02 6.66 16 Total: -1.00 -55.55 355.99 -0.33 -55.88 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.24 Total: 37.92 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.92 Total: -19.71 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -6.96 Total: -109.74 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.07 Total: -3.37 kcal Total: -55.55 -0.33 -55.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.599 kcal (2) G-P(sol) polarization free energy of solvation -55.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds