Wall clock time and date at job start Tue Mar 31 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 108.90061 * 2 1 4 4 C 1.54075 * 108.91732 * 241.43145 * 2 1 3 5 5 N 1.44266 * 111.98439 * 198.19627 * 4 2 1 6 6 C 1.47795 * 109.46448 * 96.43560 * 5 4 2 7 7 C 1.45866 * 112.91604 * 276.73843 * 6 5 4 8 8 C 1.54505 * 111.59347 * 61.33180 * 7 6 5 9 9 C 1.50465 * 108.85071 * 282.80670 * 8 7 6 10 10 H 1.09006 * 108.67672 * 331.30062 * 9 8 7 11 11 C 1.52999 * 108.77170 * 213.06848 * 9 8 7 12 12 N 1.46502 * 109.47027 * 61.49728 * 11 9 8 13 13 C 1.38402 * 120.00037 * 180.02562 * 12 11 9 14 14 N 1.32751 * 119.43851 * 359.97438 * 13 12 11 15 15 C 1.31467 * 121.74110 * 180.02562 * 14 13 12 16 16 C 1.40786 * 120.38892 * 0.02562 * 15 14 13 17 17 C 1.41202 * 120.56407 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99718 * 335.72235 * 17 16 15 19 19 C 1.39869 * 120.00047 * 155.72438 * 17 16 15 20 20 N 1.30904 * 119.99741 * 343.24402 * 19 17 16 21 21 Si 1.86793 * 120.00028 * 163.24505 * 19 17 16 22 22 H 1.48499 * 109.47031 * 59.99879 * 21 19 17 23 23 H 1.48505 * 109.47469 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47098 * 300.00218 * 21 19 17 25 25 C 1.41284 * 118.87554 * 359.97438 * 16 15 14 26 26 C 1.36675 * 118.39368 * 0.27221 * 25 16 15 27 27 Cl 1.73600 * 120.25985 * 179.70417 * 26 25 16 28 28 H 1.09000 * 109.46844 * 301.34021 * 1 2 3 29 29 H 1.09001 * 109.47192 * 61.33432 * 1 2 3 30 30 H 1.08998 * 109.47660 * 181.34063 * 1 2 3 31 31 H 1.09009 * 108.97709 * 318.84095 * 4 2 1 32 32 H 1.09000 * 108.97841 * 77.54334 * 4 2 1 33 33 H 1.00901 * 110.99570 * 219.31001 * 5 4 2 34 34 H 1.08993 * 108.79670 * 37.62655 * 6 5 4 35 35 H 1.09008 * 108.79419 * 155.85587 * 6 5 4 36 36 H 1.09008 * 109.05367 * 181.87711 * 7 6 5 37 37 H 1.08998 * 109.05649 * 300.78147 * 7 6 5 38 38 H 1.08993 * 109.57633 * 162.99616 * 8 7 6 39 39 H 1.08998 * 109.57419 * 42.61351 * 8 7 6 40 40 H 1.09000 * 109.46756 * 301.50135 * 11 9 8 41 41 H 1.08991 * 109.47204 * 181.49773 * 11 9 8 42 42 H 0.97004 * 119.99999 * 359.97438 * 12 11 9 43 43 H 1.08002 * 119.80357 * 180.02562 * 15 14 13 44 44 H 0.97002 * 119.99279 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.80288 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8830 1.0312 0.0000 4 6 2.0295 -0.6970 -1.2801 5 7 3.4068 -1.1112 -1.1671 6 6 3.4623 -2.5330 -0.7675 7 6 3.3294 -2.7238 0.6725 8 6 1.9717 -2.2010 1.1924 9 6 2.0302 -0.7001 1.2807 10 1 3.0624 -0.4012 1.4635 11 6 1.1698 -0.2423 2.4601 12 7 1.7054 -0.8044 3.7025 13 6 1.0882 -0.5274 4.9099 14 7 0.0118 0.2494 4.9294 15 6 -0.6095 0.5422 6.0503 16 6 -0.1431 0.0330 7.2772 17 6 -0.8073 0.3456 8.4834 18 1 -1.4020 1.2442 8.5551 19 6 -0.6949 -0.5085 9.5853 20 7 -0.2649 -1.7341 9.4222 21 14 -1.1582 0.0998 11.2896 22 1 -2.5855 0.5100 11.2977 23 1 -0.9512 -0.9896 12.2774 24 1 -0.3071 1.2626 11.6486 25 6 1.0010 -0.7960 7.2811 26 6 1.6125 -1.0653 6.0888 27 17 3.0260 -2.0719 6.0384 28 1 -0.3633 0.5345 0.8777 29 1 -0.3634 0.4930 -0.9017 30 1 -0.3634 -1.0273 0.0240 31 1 1.4102 -1.5735 -1.4711 32 1 1.9341 -0.0079 -2.1192 33 1 3.9021 -0.9593 -2.0330 34 1 2.6574 -3.0704 -1.2687 35 1 4.4155 -2.9517 -1.0907 36 1 3.4122 -3.7868 0.8997 37 1 4.1338 -2.1896 1.1780 38 1 1.7740 -2.6175 2.1801 39 1 1.1792 -2.4957 0.5045 40 1 0.1454 -0.5865 2.3176 41 1 1.1827 0.8459 2.5185 42 1 2.4922 -1.3713 3.6788 43 1 -1.4830 1.1771 6.0299 44 1 -0.1866 -2.3262 10.1866 45 1 1.3853 -1.2038 8.2043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155031071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:40 Heat of formation + Delta-G solvation = 12.677093 kcal Electronic energy + Delta-G solvation = -25266.446392 eV Core-core repulsion = 21729.477683 eV Total energy + Delta-G solvation = -3536.968709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.66107 -38.57669 -35.84922 -35.51632 -34.24519 -33.48720 -32.56895 -30.47323 -29.47310 -27.94241 -26.67892 -24.72235 -24.12218 -22.98878 -21.48492 -20.92667 -20.79925 -18.54339 -17.41109 -17.13710 -16.25560 -16.00326 -15.42593 -15.19244 -14.71563 -14.39892 -14.25569 -14.04767 -13.52867 -13.39982 -13.16743 -12.83250 -12.62973 -12.45312 -12.01192 -11.92614 -11.86918 -11.72388 -11.40713 -11.36478 -11.17671 -11.08595 -10.94435 -10.76223 -10.62908 -10.40997 -10.28092 -10.22579 -10.08795 -9.80416 -9.43338 -8.74213 -8.66146 -8.24288 -8.09536 -6.87966 -6.63907 -4.27573 2.54969 2.84478 3.06530 3.08802 3.21166 3.24021 3.91480 3.97533 4.22277 4.60176 4.65553 4.79096 4.92277 5.08782 5.11033 5.19720 5.33817 5.46606 5.50870 5.56557 5.56998 5.66718 5.79608 5.86249 5.94503 5.97543 6.09670 6.10979 6.17234 6.26852 6.30613 6.34872 6.39922 6.57953 6.66745 6.67904 6.88507 6.98028 7.10882 7.19298 7.22225 7.68465 7.72689 8.17097 8.40680 8.48481 8.71835 8.76076 9.58263 10.16234 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.002960 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.022095 B = 9455.607613 C =10343.786609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.073 4.073 3 H 0.069 0.931 4 C 0.065 3.935 5 N -0.681 5.681 6 C 0.062 3.938 7 C -0.120 4.120 8 C -0.114 4.114 9 C -0.082 4.082 10 H 0.075 0.925 11 C 0.148 3.852 12 N -0.741 5.741 13 C 0.294 3.706 14 N -0.503 5.503 15 C 0.016 3.984 16 C 0.037 3.963 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.800 5.800 21 Si 0.911 3.089 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.087 4.087 26 C -0.106 4.106 27 Cl -0.116 7.116 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.341 0.659 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.396 0.604 43 H 0.133 0.867 44 H 0.282 0.718 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -1.333 -16.005 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.093 4.093 3 H 0.088 0.912 4 C -0.065 4.065 5 N -0.311 5.311 6 C -0.066 4.066 7 C -0.158 4.158 8 C -0.151 4.151 9 C -0.101 4.101 10 H 0.093 0.907 11 C 0.023 3.977 12 N -0.381 5.381 13 C 0.060 3.940 14 N -0.219 5.219 15 C -0.143 4.143 16 C 0.031 3.969 17 C -0.485 4.485 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.426 5.426 21 Si 0.735 3.265 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.114 4.114 26 C -0.138 4.138 27 Cl -0.088 7.088 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.232 0.768 43 H 0.151 0.849 44 H 0.093 0.907 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.065 -0.960 -16.119 16.923 hybrid contribution 0.205 -0.964 0.844 1.298 sum 5.270 -1.925 -15.275 16.272 Atomic orbital electron populations 1.22008 0.95346 1.01946 1.02014 1.21456 0.94889 0.99407 0.93506 0.91232 1.21788 0.88701 0.98903 0.97153 1.59842 1.14195 1.19562 1.37526 1.20841 1.00426 0.88132 0.97246 1.20636 0.98626 1.00732 0.95802 1.21452 0.96482 0.95604 1.01612 1.21052 1.00404 0.94929 0.93758 0.90686 1.21157 0.96530 0.97320 0.82700 1.43872 1.33452 1.58024 1.02800 1.17456 0.93754 0.98345 0.84403 1.66788 1.08027 1.15592 1.31507 1.22357 1.00015 1.05153 0.86783 1.18287 0.91684 0.93119 0.93810 1.19285 1.27070 1.07259 0.94870 0.90045 1.25884 0.93306 0.93908 1.01306 1.69791 1.35089 1.04712 1.33046 0.86322 0.79982 0.79384 0.80790 1.18999 1.20397 1.18856 1.21303 0.94472 1.00025 0.95587 1.20946 0.93366 1.03938 0.95579 1.98237 1.42233 1.69690 1.98648 0.91199 0.93289 0.92793 0.94289 0.92424 0.84189 0.95056 0.92041 0.91929 0.91258 0.91006 0.92390 0.92814 0.93423 0.76818 0.84922 0.90687 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.02 37.16 0.30 -1.37 16 2 C -0.07 -0.79 2.77 -89.38 -0.25 -1.04 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.06 0.59 5.26 -4.67 -0.02 0.57 16 5 N -0.68 -6.10 6.40 -118.14 -0.76 -6.86 16 6 C 0.06 0.55 5.80 -6.71 -0.04 0.51 16 7 C -0.12 -1.24 5.53 -29.32 -0.16 -1.41 16 8 C -0.11 -1.37 4.83 -27.21 -0.13 -1.51 16 9 C -0.08 -1.05 1.67 -91.21 -0.15 -1.20 16 10 H 0.07 1.04 7.37 -51.93 -0.38 0.65 16 11 C 0.15 2.37 3.77 -4.04 -0.02 2.36 16 12 N -0.74 -13.82 4.98 -60.32 -0.30 -14.13 16 13 C 0.29 6.66 7.48 -155.06 -1.16 5.50 16 14 N -0.50 -11.89 9.52 -11.75 -0.11 -12.01 16 15 C 0.02 0.38 10.97 -16.75 -0.18 0.19 16 16 C 0.04 0.95 5.59 -106.65 -0.60 0.35 16 17 C -0.45 -11.55 9.07 -37.85 -0.34 -11.89 16 18 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 19 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 20 N -0.80 -20.26 10.91 55.54 0.61 -19.65 16 21 Si 0.91 18.28 29.59 -169.99 -5.03 13.25 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.09 -2.21 8.52 -38.99 -0.33 -2.54 16 26 C -0.11 -2.47 6.32 -39.57 -0.25 -2.72 16 27 Cl -0.12 -2.30 27.56 -51.86 -1.43 -3.73 16 28 H 0.07 0.85 6.37 -51.93 -0.33 0.52 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.59 7.39 -51.93 -0.38 0.20 16 31 H 0.04 0.36 6.35 -51.92 -0.33 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.34 2.39 8.89 -39.29 -0.35 2.04 16 34 H 0.03 0.27 7.24 -51.93 -0.38 -0.10 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.78 7.58 -51.93 -0.39 0.39 16 38 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 39 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 40 H 0.05 0.92 6.62 -51.93 -0.34 0.57 16 41 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 42 H 0.40 6.93 6.31 -40.82 -0.26 6.67 16 43 H 0.13 2.96 8.06 -52.49 -0.42 2.53 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.14 3.66 6.20 -52.49 -0.33 3.33 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -26.65 357.43 -11.72 -38.36 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.65 Total: 11.86 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.43 Total: -12.49 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.56 Total: -52.64 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -1.43 Total: -3.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.65 -11.72 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.040 kcal (2) G-P(sol) polarization free energy of solvation -26.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds