Wall clock time and date at job start Tue Mar 31 2020 14:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 108.90061 * 2 1 4 4 C 1.54075 * 108.91732 * 241.43145 * 2 1 3 5 5 N 1.44266 * 111.98439 * 198.19627 * 4 2 1 6 6 C 1.47795 * 109.46448 * 96.43560 * 5 4 2 7 7 C 1.45866 * 112.91604 * 276.73843 * 6 5 4 8 8 C 1.54505 * 111.59347 * 61.33180 * 7 6 5 9 9 C 1.50465 * 108.85071 * 282.80670 * 8 7 6 10 10 H 1.09006 * 108.67672 * 331.30062 * 9 8 7 11 11 C 1.52999 * 108.77170 * 213.06848 * 9 8 7 12 12 N 1.46502 * 109.47027 * 61.49728 * 11 9 8 13 13 C 1.38402 * 120.00037 * 180.02562 * 12 11 9 14 14 N 1.32751 * 119.43851 * 359.97438 * 13 12 11 15 15 C 1.31467 * 121.74110 * 180.02562 * 14 13 12 16 16 C 1.40786 * 120.38892 * 0.02562 * 15 14 13 17 17 C 1.41202 * 120.56407 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99718 * 335.72235 * 17 16 15 19 19 C 1.39869 * 120.00047 * 155.72438 * 17 16 15 20 20 N 1.30904 * 119.99741 * 343.24402 * 19 17 16 21 21 Si 1.86793 * 120.00028 * 163.24505 * 19 17 16 22 22 H 1.48499 * 109.47031 * 59.99879 * 21 19 17 23 23 H 1.48505 * 109.47469 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47098 * 300.00218 * 21 19 17 25 25 C 1.41284 * 118.87554 * 359.97438 * 16 15 14 26 26 C 1.36675 * 118.39368 * 0.27221 * 25 16 15 27 27 Cl 1.73600 * 120.25985 * 179.70417 * 26 25 16 28 28 H 1.09000 * 109.46844 * 301.34021 * 1 2 3 29 29 H 1.09001 * 109.47192 * 61.33432 * 1 2 3 30 30 H 1.08998 * 109.47660 * 181.34063 * 1 2 3 31 31 H 1.09009 * 108.97709 * 318.84095 * 4 2 1 32 32 H 1.09000 * 108.97841 * 77.54334 * 4 2 1 33 33 H 1.00901 * 110.99570 * 219.31001 * 5 4 2 34 34 H 1.08993 * 108.79670 * 37.62655 * 6 5 4 35 35 H 1.09008 * 108.79419 * 155.85587 * 6 5 4 36 36 H 1.09008 * 109.05367 * 181.87711 * 7 6 5 37 37 H 1.08998 * 109.05649 * 300.78147 * 7 6 5 38 38 H 1.08993 * 109.57633 * 162.99616 * 8 7 6 39 39 H 1.08998 * 109.57419 * 42.61351 * 8 7 6 40 40 H 1.09000 * 109.46756 * 301.50135 * 11 9 8 41 41 H 1.08991 * 109.47204 * 181.49773 * 11 9 8 42 42 H 0.97004 * 119.99999 * 359.97438 * 12 11 9 43 43 H 1.08002 * 119.80357 * 180.02562 * 15 14 13 44 44 H 0.97002 * 119.99279 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.80288 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8830 1.0312 0.0000 4 6 2.0295 -0.6970 -1.2801 5 7 3.4068 -1.1112 -1.1671 6 6 3.4623 -2.5330 -0.7675 7 6 3.3294 -2.7238 0.6725 8 6 1.9717 -2.2010 1.1924 9 6 2.0302 -0.7001 1.2807 10 1 3.0624 -0.4012 1.4635 11 6 1.1698 -0.2423 2.4601 12 7 1.7054 -0.8044 3.7025 13 6 1.0882 -0.5274 4.9099 14 7 0.0118 0.2494 4.9294 15 6 -0.6095 0.5422 6.0503 16 6 -0.1431 0.0330 7.2772 17 6 -0.8073 0.3456 8.4834 18 1 -1.4020 1.2442 8.5551 19 6 -0.6949 -0.5085 9.5853 20 7 -0.2649 -1.7341 9.4222 21 14 -1.1582 0.0998 11.2896 22 1 -2.5855 0.5100 11.2977 23 1 -0.9512 -0.9896 12.2774 24 1 -0.3071 1.2626 11.6486 25 6 1.0010 -0.7960 7.2811 26 6 1.6125 -1.0653 6.0888 27 17 3.0260 -2.0719 6.0384 28 1 -0.3633 0.5345 0.8777 29 1 -0.3634 0.4930 -0.9017 30 1 -0.3634 -1.0273 0.0240 31 1 1.4102 -1.5735 -1.4711 32 1 1.9341 -0.0079 -2.1192 33 1 3.9021 -0.9593 -2.0330 34 1 2.6574 -3.0704 -1.2687 35 1 4.4155 -2.9517 -1.0907 36 1 3.4122 -3.7868 0.8997 37 1 4.1338 -2.1896 1.1780 38 1 1.7740 -2.6175 2.1801 39 1 1.1792 -2.4957 0.5045 40 1 0.1454 -0.5865 2.3176 41 1 1.1827 0.8459 2.5185 42 1 2.4922 -1.3713 3.6788 43 1 -1.4830 1.1771 6.0299 44 1 -0.1866 -2.3262 10.1866 45 1 1.3853 -1.2038 8.2043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155031071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:39 Heat of formation + Delta-G solvation = -1.664827 kcal Electronic energy + Delta-G solvation = -25267.068304 eV Core-core repulsion = 21729.477683 eV Total energy + Delta-G solvation = -3537.590621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80996 -40.17134 -37.31564 -37.09858 -35.78677 -34.63511 -33.76009 -32.35524 -31.11379 -29.08718 -27.82735 -26.42300 -25.00354 -24.39255 -23.21400 -22.51312 -21.67048 -19.59943 -19.28251 -18.41182 -17.62972 -17.30682 -16.86291 -16.27174 -16.08279 -15.94808 -15.48610 -15.33658 -14.90421 -14.75893 -14.37936 -14.12275 -13.99996 -13.66001 -13.52124 -13.38983 -13.18837 -12.98542 -12.84604 -12.74557 -12.65107 -12.42773 -12.25533 -12.02954 -11.90217 -11.63716 -11.58124 -11.27263 -11.23581 -11.13326 -11.06749 -10.47146 -10.11509 -9.97271 -9.35077 -8.70038 -8.42360 -6.18097 0.66352 1.00937 1.42505 1.42916 1.53240 1.57293 2.23816 2.67352 2.75544 3.29578 3.65315 3.74649 3.89274 3.97544 4.13840 4.25670 4.28236 4.34073 4.48958 4.53442 4.61067 4.70113 4.76219 4.78114 4.80731 4.84054 4.86820 5.00260 5.06215 5.11391 5.15081 5.16755 5.24442 5.29503 5.34231 5.38161 5.43084 5.50103 5.62957 5.80884 5.81327 6.17254 6.34925 6.61439 6.65142 6.77522 6.85554 6.90927 7.74305 8.35481 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.002960 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.022095 B = 9455.607613 C =10343.786609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 H 0.066 0.934 4 C 0.070 3.930 5 N -0.691 5.691 6 C 0.062 3.938 7 C -0.116 4.116 8 C -0.111 4.111 9 C -0.069 4.069 10 H 0.066 0.934 11 C 0.152 3.848 12 N -0.731 5.731 13 C 0.294 3.706 14 N -0.511 5.511 15 C 0.009 3.991 16 C 0.010 3.990 17 C -0.484 4.484 18 H 0.086 0.914 19 C 0.034 3.966 20 N -0.832 5.832 21 Si 0.983 3.017 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.261 1.261 25 C -0.102 4.102 26 C -0.117 4.117 27 Cl -0.087 7.087 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.354 0.646 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.402 0.598 43 H 0.147 0.853 44 H 0.288 0.712 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 -1.493 -17.335 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.061 4.061 5 N -0.322 5.322 6 C -0.066 4.066 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.088 4.088 10 H 0.084 0.916 11 C 0.028 3.972 12 N -0.371 5.371 13 C 0.059 3.941 14 N -0.228 5.228 15 C -0.150 4.150 16 C 0.004 3.996 17 C -0.514 4.514 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.459 5.459 21 Si 0.804 3.196 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.186 1.186 25 C -0.129 4.129 26 C -0.150 4.150 27 Cl -0.058 7.058 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.239 0.761 43 H 0.164 0.836 44 H 0.099 0.901 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.623 -1.125 -17.498 18.413 hybrid contribution 0.113 -0.954 1.145 1.495 sum 5.736 -2.079 -16.353 17.454 Atomic orbital electron populations 1.21950 0.95236 1.01716 1.02015 1.21462 0.94961 0.99232 0.93448 0.91557 1.21710 0.88858 0.99193 0.96321 1.59763 1.14183 1.19658 1.38590 1.20812 1.01538 0.88288 0.96002 1.20611 0.96847 1.00991 0.96901 1.21393 0.97976 0.94856 1.00638 1.20959 0.98993 0.95571 0.93273 0.91555 1.21241 0.96787 0.96369 0.82819 1.43985 1.33157 1.57513 1.02472 1.17756 0.93344 0.97401 0.85590 1.66850 1.08536 1.16150 1.31226 1.22601 1.00476 1.05228 0.86648 1.18578 0.92347 0.94009 0.94670 1.19561 1.28137 1.07992 0.95731 0.89586 1.26718 0.92828 0.93662 1.04839 1.69853 1.35892 1.05764 1.34368 0.85225 0.79834 0.78808 0.75724 1.18240 1.19657 1.18584 1.21249 0.95064 1.00843 0.95788 1.21018 0.94423 1.04310 0.95267 1.98231 1.40312 1.68705 1.98602 0.93203 0.91398 0.92994 0.94129 0.90652 0.82641 0.94527 0.90438 0.91105 0.92256 0.93205 0.91853 0.93728 0.94714 0.76101 0.83559 0.90136 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.02 71.98 0.58 -2.49 16 2 C -0.07 -1.44 2.77 -9.99 -0.03 -1.47 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.07 1.09 5.26 87.16 0.46 1.55 16 5 N -0.69 -10.52 6.40 -527.70 -3.38 -13.90 16 6 C 0.06 0.94 5.80 83.94 0.49 1.42 16 7 C -0.12 -2.19 5.53 28.92 0.16 -2.03 16 8 C -0.11 -2.56 4.83 30.29 0.15 -2.42 16 9 C -0.07 -1.70 1.67 -11.18 -0.02 -1.72 16 10 H 0.07 1.77 7.37 -2.38 -0.02 1.76 16 11 C 0.15 4.90 3.77 86.38 0.33 5.22 16 12 N -0.73 -27.36 4.98 -344.76 -1.72 -29.08 16 13 C 0.29 13.48 7.48 133.32 1.00 14.48 16 14 N -0.51 -24.54 9.52 -191.09 -1.82 -26.35 16 15 C 0.01 0.43 10.97 85.37 0.94 1.37 16 16 C 0.01 0.51 5.59 -21.18 -0.12 0.39 16 17 C -0.48 -25.12 9.07 23.39 0.21 -24.90 16 18 H 0.09 4.22 7.90 -2.91 -0.02 4.19 16 19 C 0.03 1.66 5.18 85.23 0.44 2.10 16 20 N -0.83 -42.85 10.91 21.82 0.24 -42.61 16 21 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 C -0.10 -5.34 8.52 22.65 0.19 -5.15 16 26 C -0.12 -5.55 6.32 22.28 0.14 -5.41 16 27 Cl -0.09 -3.41 27.56 -2.72 -0.07 -3.49 16 28 H 0.05 1.20 6.37 -2.39 -0.02 1.19 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.06 7.39 -2.39 -0.02 1.05 16 31 H 0.04 0.64 6.35 -2.38 -0.02 0.63 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.35 3.88 8.89 -89.69 -0.80 3.08 16 34 H 0.04 0.53 7.24 -2.39 -0.02 0.52 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 38 H 0.05 1.37 6.58 -2.39 -0.02 1.35 16 39 H 0.06 1.40 6.38 -2.39 -0.02 1.38 16 40 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 41 H 0.03 1.22 8.13 -2.39 -0.02 1.20 16 42 H 0.40 13.96 6.31 -92.71 -0.58 13.38 16 43 H 0.15 6.65 8.06 -2.91 -0.02 6.62 16 44 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 45 H 0.12 6.79 6.20 -2.91 -0.02 6.77 16 Total: -1.00 -57.74 357.43 -0.17 -57.91 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.36 Total: 37.11 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.91 Total: -19.06 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -6.68 Total: -111.94 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.07 Total: -3.49 kcal Total: -57.74 -0.17 -57.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.241 kcal (2) G-P(sol) polarization free energy of solvation -57.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds