Wall clock time and date at job start Tue Mar 31 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.54257 * 2 1 4 4 C 1.54436 * 109.54246 * 120.26597 * 2 1 3 5 5 N 1.39776 * 111.76622 * 197.27451 * 4 2 1 6 6 C 1.47635 * 114.76426 * 297.72325 * 5 4 2 7 7 C 1.50811 * 108.04911 * 82.80123 * 6 5 4 8 8 C 1.53826 * 111.62526 * 264.94731 * 7 6 5 9 9 C 1.50742 * 109.54765 * 239.81062 * 2 1 3 10 10 H 1.08998 * 108.85824 * 267.82477 * 9 2 1 11 11 C 1.53006 * 108.85563 * 26.31570 * 9 2 1 12 12 N 1.46500 * 109.46969 * 184.99892 * 11 9 2 13 13 C 1.38404 * 119.99733 * 179.72338 * 12 11 9 14 14 N 1.32749 * 119.43660 * 0.02562 * 13 12 11 15 15 C 1.31479 * 121.73960 * 179.71004 * 14 13 12 16 16 C 1.40787 * 120.38339 * 0.55897 * 15 14 13 17 17 C 1.41203 * 120.55998 * 179.70523 * 16 15 14 18 18 H 1.07993 * 119.99733 * 335.73090 * 17 16 15 19 19 C 1.39866 * 119.99960 * 155.72987 * 17 16 15 20 20 N 1.30900 * 119.99728 * 343.22247 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 163.22202 * 19 17 16 22 22 H 1.48497 * 109.47221 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46778 * 119.99810 * 21 19 17 24 24 H 1.48497 * 109.46875 * 239.99875 * 21 19 17 25 25 C 1.41281 * 118.87514 * 359.72315 * 16 15 14 26 26 C 1.36661 * 118.40267 * 0.02562 * 25 16 15 27 27 Cl 1.73592 * 120.26597 * 180.02562 * 26 25 16 28 28 H 1.09011 * 109.46931 * 180.18655 * 1 2 3 29 29 H 1.08994 * 109.47643 * 300.18371 * 1 2 3 30 30 H 1.08999 * 109.47046 * 60.18903 * 1 2 3 31 31 H 1.09003 * 109.02367 * 317.86683 * 4 2 1 32 32 H 1.08999 * 109.01738 * 76.76901 * 4 2 1 33 33 H 1.00901 * 111.00095 * 64.57690 * 5 4 2 34 34 H 1.09003 * 109.74617 * 202.44478 * 6 5 4 35 35 H 1.09005 * 109.74002 * 323.16537 * 6 5 4 36 36 H 1.08996 * 109.05152 * 25.50599 * 7 6 5 37 37 H 1.09002 * 109.05039 * 144.47456 * 7 6 5 38 38 H 1.08998 * 108.98357 * 280.31946 * 8 7 6 39 39 H 1.08999 * 108.98280 * 161.60184 * 8 7 6 40 40 H 1.08997 * 109.47169 * 64.99752 * 11 9 2 41 41 H 1.09001 * 109.46469 * 304.99676 * 11 9 2 42 42 H 0.96995 * 120.00178 * 359.97438 * 12 11 9 43 43 H 1.07997 * 119.80344 * 180.28541 * 15 14 13 44 44 H 0.97005 * 119.99667 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.80136 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0466 -0.7335 1.2570 5 7 3.3881 -0.4378 1.5151 6 6 4.3281 -0.8546 0.4557 7 6 4.3323 0.2113 -0.6112 8 6 3.3591 -0.1262 -1.7536 9 6 2.0344 -0.7143 -1.2279 10 1 2.1892 -1.7656 -0.9852 11 6 0.9767 -0.6122 -2.3288 12 7 1.4003 -1.4022 -3.4876 13 6 0.5963 -1.4666 -4.6123 14 7 -0.5560 -0.8077 -4.6292 15 6 -1.3519 -0.8328 -5.6755 16 6 -1.0035 -1.5791 -6.8174 17 6 -1.8583 -1.6136 -7.9407 18 1 -2.9143 -1.4214 -7.8217 19 6 -1.3374 -1.8968 -9.2075 20 7 -0.0490 -1.8062 -9.4204 21 14 -2.4802 -2.4040 -10.5953 22 1 -3.8797 -2.4301 -10.0997 23 1 -2.3684 -1.4291 -11.7099 24 1 -2.1008 -3.7555 -11.0799 25 6 0.2157 -2.2930 -6.8201 26 6 1.0087 -2.2293 -5.7089 27 17 2.5171 -3.0871 -5.6603 28 1 -0.3633 -1.0278 0.0033 29 1 -0.3634 0.5166 0.8883 30 1 -0.3633 0.5109 -0.8917 31 1 1.4453 -0.4341 2.1154 32 1 1.9431 -1.8084 1.1087 33 1 3.5064 0.5387 1.7397 34 1 5.3293 -0.9620 0.8731 35 1 4.0033 -1.8030 0.0275 36 1 4.0413 1.1623 -0.1651 37 1 5.3392 0.3030 -1.0185 38 1 3.8298 -0.8509 -2.4179 39 1 3.1450 0.7820 -2.3169 40 1 0.8586 0.4305 -2.6235 41 1 0.0264 -0.9944 -1.9561 42 1 2.2423 -1.8831 -3.4652 43 1 -2.2802 -0.2814 -5.6571 44 1 0.3123 -2.0022 -10.2991 45 1 0.5137 -2.8751 -7.6795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155031072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:43 Heat of formation + Delta-G solvation = 11.243988 kcal Electronic energy + Delta-G solvation = -25260.734891 eV Core-core repulsion = 21723.704038 eV Total energy + Delta-G solvation = -3537.030853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01882 -38.65809 -35.91582 -35.56756 -34.22840 -33.48621 -32.67269 -30.51948 -29.42850 -27.89881 -26.74238 -24.73277 -23.98717 -23.08793 -21.58431 -21.47324 -20.90625 -18.88407 -17.45179 -16.95696 -16.14458 -15.94750 -15.37721 -15.21808 -15.11394 -14.62599 -14.27246 -13.71384 -13.66768 -13.47305 -13.03353 -12.95750 -12.62987 -12.59123 -12.30000 -12.03675 -11.79358 -11.77776 -11.55740 -11.42483 -11.21821 -11.14017 -11.06266 -10.97967 -10.74989 -10.52621 -10.45758 -10.29205 -10.22114 -9.83838 -9.48951 -8.79401 -8.41208 -8.29659 -8.13979 -6.92565 -6.68575 -4.31671 2.50079 2.79018 3.05118 3.09917 3.16029 3.19048 3.88686 4.13998 4.17056 4.50697 4.56437 4.72820 4.76450 4.86983 4.99507 5.09008 5.27981 5.45378 5.49800 5.51725 5.53144 5.55204 5.73671 5.81516 5.83933 5.86132 5.94060 6.04882 6.07048 6.11263 6.20552 6.23461 6.31175 6.42912 6.50692 6.62788 6.93605 7.06454 7.07084 7.15301 7.31714 7.64210 7.68174 8.11639 8.35885 8.42427 8.67447 8.72322 9.52992 10.12306 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024459 B = 0.002926 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.486600 B = 9568.121393 C =10370.422236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.069 0.931 4 C 0.079 3.921 5 N -0.700 5.700 6 C 0.065 3.935 7 C -0.151 4.151 8 C -0.112 4.112 9 C -0.094 4.094 10 H 0.068 0.932 11 C 0.149 3.851 12 N -0.742 5.742 13 C 0.293 3.707 14 N -0.503 5.503 15 C 0.015 3.985 16 C 0.037 3.963 17 C -0.452 4.452 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.799 5.799 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.272 1.272 25 C -0.087 4.087 26 C -0.105 4.105 27 Cl -0.116 7.116 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.341 0.659 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.394 0.606 43 H 0.134 0.866 44 H 0.282 0.718 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 1.940 14.318 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 H 0.087 0.913 4 C -0.053 4.053 5 N -0.329 5.329 6 C -0.063 4.063 7 C -0.190 4.190 8 C -0.150 4.150 9 C -0.113 4.113 10 H 0.087 0.913 11 C 0.024 3.976 12 N -0.383 5.383 13 C 0.059 3.941 14 N -0.219 5.219 15 C -0.144 4.144 16 C 0.031 3.969 17 C -0.483 4.483 18 H 0.101 0.899 19 C -0.145 4.145 20 N -0.425 5.425 21 Si 0.735 3.265 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.114 4.114 26 C -0.138 4.138 27 Cl -0.088 7.088 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.230 0.770 43 H 0.151 0.849 44 H 0.092 0.908 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.048 1.864 15.284 16.543 hybrid contribution 0.107 -0.222 -2.366 2.379 sum 6.155 1.642 12.918 14.404 Atomic orbital electron populations 1.21947 0.94657 1.02140 1.01928 1.21858 0.96699 0.99962 0.95915 0.91301 1.21047 0.88391 1.00092 0.95735 1.57675 1.06141 1.24969 1.44108 1.21755 0.96273 0.98301 0.90013 1.22129 0.99870 0.99339 0.97690 1.21945 0.94480 1.01373 0.97165 1.21283 0.94913 1.00100 0.95026 0.91334 1.21313 0.96105 0.95461 0.84685 1.43850 1.23419 1.57281 1.13754 1.17445 0.91098 0.98531 0.87046 1.66780 1.03330 1.22066 1.29724 1.22363 0.99405 1.01966 0.90621 1.18302 0.92713 0.91757 0.94103 1.19355 0.95823 1.42343 0.90805 0.89935 1.25897 0.95466 0.92778 1.00313 1.69803 1.13188 1.35282 1.24265 0.86224 0.81272 0.78951 0.80098 1.18356 1.20009 1.19741 1.21306 0.94912 0.99445 0.95745 1.20943 0.89956 1.04778 0.98081 1.98236 1.34739 1.77334 1.98528 0.92381 0.93170 0.91466 0.91162 0.91454 0.83855 0.90923 0.90732 0.92146 0.91823 0.91988 0.91854 0.93330 0.92192 0.76996 0.84888 0.90757 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 7.74 37.16 0.29 -1.27 16 2 C -0.12 -1.23 2.32 -91.00 -0.21 -1.44 16 3 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 4 C 0.08 0.72 5.39 -6.74 -0.04 0.68 16 5 N -0.70 -6.10 6.38 -118.54 -0.76 -6.85 16 6 C 0.06 0.57 6.28 -4.52 -0.03 0.54 16 7 C -0.15 -1.36 5.39 -27.40 -0.15 -1.51 16 8 C -0.11 -1.26 4.89 -25.69 -0.13 -1.39 16 9 C -0.09 -1.11 1.65 -91.13 -0.15 -1.26 16 10 H 0.07 0.83 6.57 -51.93 -0.34 0.49 16 11 C 0.15 2.30 3.70 -4.04 -0.01 2.29 16 12 N -0.74 -13.53 5.39 -60.32 -0.33 -13.85 16 13 C 0.29 6.53 7.48 -155.05 -1.16 5.37 16 14 N -0.50 -11.74 9.52 -11.75 -0.11 -11.85 16 15 C 0.02 0.36 10.97 -16.74 -0.18 0.18 16 16 C 0.04 0.94 5.59 -106.65 -0.60 0.35 16 17 C -0.45 -11.42 9.07 -37.85 -0.34 -11.76 16 18 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 19 C 0.07 1.76 5.18 -17.34 -0.09 1.67 16 20 N -0.80 -20.08 10.91 55.54 0.61 -19.47 16 21 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.09 -2.19 8.52 -39.00 -0.33 -2.53 16 26 C -0.11 -2.43 6.32 -39.57 -0.25 -2.68 16 27 Cl -0.12 -2.28 27.56 -51.86 -1.43 -3.71 16 28 H 0.06 0.63 7.68 -51.92 -0.40 0.23 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 31 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 32 H 0.07 0.67 7.54 -51.93 -0.39 0.28 16 33 H 0.34 2.61 8.10 -39.29 -0.32 2.29 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.72 6.66 -51.93 -0.35 0.37 16 36 H 0.06 0.52 6.77 -51.93 -0.35 0.17 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.74 7.46 -51.93 -0.39 0.36 16 39 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 40 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 41 H 0.06 0.98 5.96 -51.93 -0.31 0.67 16 42 H 0.39 6.71 6.25 -40.82 -0.25 6.46 16 43 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 44 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 45 H 0.14 3.63 6.20 -52.49 -0.33 3.31 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -26.15 356.34 -11.66 -37.81 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.60 Total: 12.22 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.38 Total: -12.76 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.59 Total: -52.02 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.43 Total: -3.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.15 -11.66 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.054 kcal (2) G-P(sol) polarization free energy of solvation -26.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds