Wall clock time and date at job start Tue Mar 31 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.54257 * 2 1 4 4 C 1.54436 * 109.54246 * 120.26597 * 2 1 3 5 5 N 1.39776 * 111.76622 * 197.27451 * 4 2 1 6 6 C 1.47635 * 114.76426 * 297.72325 * 5 4 2 7 7 C 1.50811 * 108.04911 * 82.80123 * 6 5 4 8 8 C 1.53826 * 111.62526 * 264.94731 * 7 6 5 9 9 C 1.50742 * 109.54765 * 239.81062 * 2 1 3 10 10 H 1.08998 * 108.85824 * 267.82477 * 9 2 1 11 11 C 1.53006 * 108.85563 * 26.31570 * 9 2 1 12 12 N 1.46500 * 109.46969 * 184.99892 * 11 9 2 13 13 C 1.38404 * 119.99733 * 179.72338 * 12 11 9 14 14 N 1.32749 * 119.43660 * 0.02562 * 13 12 11 15 15 C 1.31479 * 121.73960 * 179.71004 * 14 13 12 16 16 C 1.40787 * 120.38339 * 0.55897 * 15 14 13 17 17 C 1.41203 * 120.55998 * 179.70523 * 16 15 14 18 18 H 1.07993 * 119.99733 * 335.73090 * 17 16 15 19 19 C 1.39866 * 119.99960 * 155.72987 * 17 16 15 20 20 N 1.30900 * 119.99728 * 343.22247 * 19 17 16 21 21 Si 1.86802 * 119.99973 * 163.22202 * 19 17 16 22 22 H 1.48497 * 109.47221 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46778 * 119.99810 * 21 19 17 24 24 H 1.48497 * 109.46875 * 239.99875 * 21 19 17 25 25 C 1.41281 * 118.87514 * 359.72315 * 16 15 14 26 26 C 1.36661 * 118.40267 * 0.02562 * 25 16 15 27 27 Cl 1.73592 * 120.26597 * 180.02562 * 26 25 16 28 28 H 1.09011 * 109.46931 * 180.18655 * 1 2 3 29 29 H 1.08994 * 109.47643 * 300.18371 * 1 2 3 30 30 H 1.08999 * 109.47046 * 60.18903 * 1 2 3 31 31 H 1.09003 * 109.02367 * 317.86683 * 4 2 1 32 32 H 1.08999 * 109.01738 * 76.76901 * 4 2 1 33 33 H 1.00901 * 111.00095 * 64.57690 * 5 4 2 34 34 H 1.09003 * 109.74617 * 202.44478 * 6 5 4 35 35 H 1.09005 * 109.74002 * 323.16537 * 6 5 4 36 36 H 1.08996 * 109.05152 * 25.50599 * 7 6 5 37 37 H 1.09002 * 109.05039 * 144.47456 * 7 6 5 38 38 H 1.08998 * 108.98357 * 280.31946 * 8 7 6 39 39 H 1.08999 * 108.98280 * 161.60184 * 8 7 6 40 40 H 1.08997 * 109.47169 * 64.99752 * 11 9 2 41 41 H 1.09001 * 109.46469 * 304.99676 * 11 9 2 42 42 H 0.96995 * 120.00178 * 359.97438 * 12 11 9 43 43 H 1.07997 * 119.80344 * 180.28541 * 15 14 13 44 44 H 0.97005 * 119.99667 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.80136 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0466 -0.7335 1.2570 5 7 3.3881 -0.4378 1.5151 6 6 4.3281 -0.8546 0.4557 7 6 4.3323 0.2113 -0.6112 8 6 3.3591 -0.1262 -1.7536 9 6 2.0344 -0.7143 -1.2279 10 1 2.1892 -1.7656 -0.9852 11 6 0.9767 -0.6122 -2.3288 12 7 1.4003 -1.4022 -3.4876 13 6 0.5963 -1.4666 -4.6123 14 7 -0.5560 -0.8077 -4.6292 15 6 -1.3519 -0.8328 -5.6755 16 6 -1.0035 -1.5791 -6.8174 17 6 -1.8583 -1.6136 -7.9407 18 1 -2.9143 -1.4214 -7.8217 19 6 -1.3374 -1.8968 -9.2075 20 7 -0.0490 -1.8062 -9.4204 21 14 -2.4802 -2.4040 -10.5953 22 1 -3.8797 -2.4301 -10.0997 23 1 -2.3684 -1.4291 -11.7099 24 1 -2.1008 -3.7555 -11.0799 25 6 0.2157 -2.2930 -6.8201 26 6 1.0087 -2.2293 -5.7089 27 17 2.5171 -3.0871 -5.6603 28 1 -0.3633 -1.0278 0.0033 29 1 -0.3634 0.5166 0.8883 30 1 -0.3633 0.5109 -0.8917 31 1 1.4453 -0.4341 2.1154 32 1 1.9431 -1.8084 1.1087 33 1 3.5064 0.5387 1.7397 34 1 5.3293 -0.9620 0.8731 35 1 4.0033 -1.8030 0.0275 36 1 4.0413 1.1623 -0.1651 37 1 5.3392 0.3030 -1.0185 38 1 3.8298 -0.8509 -2.4179 39 1 3.1450 0.7820 -2.3169 40 1 0.8586 0.4305 -2.6235 41 1 0.0264 -0.9944 -1.9561 42 1 2.2423 -1.8831 -3.4652 43 1 -2.2802 -0.2814 -5.6571 44 1 0.3123 -2.0022 -10.2991 45 1 0.5137 -2.8751 -7.6795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155031072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:42 Heat of formation + Delta-G solvation = -2.662475 kcal Electronic energy + Delta-G solvation = -25261.337921 eV Core-core repulsion = 21723.704038 eV Total energy + Delta-G solvation = -3537.633883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00771 -40.34171 -37.35261 -37.15699 -35.79067 -34.52010 -33.88793 -32.37995 -31.08354 -28.91483 -27.94253 -26.39362 -24.88150 -24.35544 -23.23977 -22.68879 -22.16790 -19.88226 -19.30829 -18.41177 -17.62110 -17.07755 -16.77062 -16.24509 -16.06372 -16.01819 -15.82681 -15.19907 -15.01534 -14.84257 -14.29618 -14.01260 -13.85326 -13.72421 -13.63359 -13.42770 -13.26207 -13.16188 -12.87624 -12.75152 -12.64762 -12.50818 -12.37444 -12.03000 -11.93177 -11.85645 -11.64389 -11.48275 -11.28713 -11.24423 -11.11221 -10.48615 -10.14806 -9.99433 -9.12726 -8.72509 -8.44834 -6.20293 0.63755 0.97838 1.39812 1.42143 1.52035 1.56868 2.22547 2.64395 2.73383 3.44212 3.61007 3.64550 3.78085 3.85997 4.05928 4.13976 4.19063 4.29758 4.45099 4.49220 4.54512 4.65519 4.66187 4.72837 4.74872 4.85737 4.93733 4.96266 5.02748 5.07058 5.08671 5.13045 5.22953 5.24806 5.26168 5.29906 5.37425 5.42627 5.51255 5.78671 5.79075 6.32712 6.38561 6.59140 6.67242 6.74541 6.82935 6.88558 7.71347 8.33645 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024459 B = 0.002926 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.486600 B = 9568.121393 C =10370.422236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 H 0.073 0.927 4 C 0.087 3.913 5 N -0.701 5.701 6 C 0.067 3.933 7 C -0.142 4.142 8 C -0.110 4.110 9 C -0.082 4.082 10 H 0.068 0.932 11 C 0.152 3.848 12 N -0.732 5.732 13 C 0.294 3.706 14 N -0.511 5.511 15 C 0.008 3.992 16 C 0.010 3.990 17 C -0.482 4.482 18 H 0.086 0.914 19 C 0.033 3.967 20 N -0.832 5.832 21 Si 0.983 3.017 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.268 1.268 25 C -0.102 4.102 26 C -0.117 4.117 27 Cl -0.087 7.087 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.053 0.947 42 H 0.401 0.599 43 H 0.147 0.853 44 H 0.288 0.712 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.626 1.987 15.585 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 H 0.091 0.909 4 C -0.045 4.045 5 N -0.330 5.330 6 C -0.062 4.062 7 C -0.181 4.181 8 C -0.148 4.148 9 C -0.101 4.101 10 H 0.087 0.913 11 C 0.028 3.972 12 N -0.373 5.373 13 C 0.059 3.941 14 N -0.227 5.227 15 C -0.150 4.150 16 C 0.004 3.996 17 C -0.512 4.512 18 H 0.104 0.896 19 C -0.181 4.181 20 N -0.459 5.459 21 Si 0.804 3.196 22 H -0.179 1.179 23 H -0.194 1.194 24 H -0.193 1.193 25 C -0.129 4.129 26 C -0.150 4.150 27 Cl -0.059 7.059 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.238 0.762 43 H 0.164 0.836 44 H 0.099 0.901 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.674 1.920 16.593 17.988 hybrid contribution 0.026 -0.226 -2.650 2.660 sum 6.699 1.695 13.943 15.562 Atomic orbital electron populations 1.21904 0.94975 1.01723 1.01856 1.21834 0.96312 1.00087 0.95506 0.90854 1.20970 0.88803 0.99369 0.95394 1.57681 1.05778 1.25692 1.43888 1.21751 0.96897 0.97603 0.89903 1.22061 0.99467 0.99768 0.96848 1.21917 0.94670 1.00292 0.97946 1.21221 0.94008 1.00539 0.94337 0.91337 1.21415 0.97234 0.93907 0.84605 1.43973 1.22983 1.57021 1.13315 1.17750 0.91047 0.97451 0.87898 1.66847 1.03785 1.22541 1.29547 1.22604 1.00030 1.01852 0.90495 1.18587 0.93401 0.92622 0.94987 1.19608 0.96062 1.43942 0.91611 0.89608 1.26722 0.96885 0.92069 1.02400 1.69859 1.14834 1.35907 1.25258 0.85132 0.79159 0.78547 0.76757 1.17872 1.19366 1.19275 1.21249 0.95640 1.00005 0.96054 1.21019 0.91069 1.05148 0.97771 1.98231 1.32565 1.76607 1.98470 0.92974 0.91338 0.93433 0.89912 0.92294 0.82857 0.89679 0.91693 0.91376 0.91008 0.92843 0.93363 0.94823 0.92933 0.76229 0.83565 0.90136 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 7.74 71.98 0.56 -2.35 16 2 C -0.12 -2.12 2.32 -11.04 -0.03 -2.15 16 3 H 0.07 1.32 7.11 -2.39 -0.02 1.30 16 4 C 0.09 1.37 5.39 88.07 0.47 1.84 16 5 N -0.70 -10.33 6.38 -528.94 -3.37 -13.70 16 6 C 0.07 1.00 6.28 85.45 0.54 1.54 16 7 C -0.14 -2.25 5.39 30.16 0.16 -2.09 16 8 C -0.11 -2.37 4.89 31.27 0.15 -2.22 16 9 C -0.08 -1.85 1.65 -11.13 -0.02 -1.87 16 10 H 0.07 1.58 6.57 -2.39 -0.02 1.56 16 11 C 0.15 4.69 3.70 86.38 0.32 5.01 16 12 N -0.73 -26.57 5.39 -344.74 -1.86 -28.43 16 13 C 0.29 13.21 7.48 133.32 1.00 14.21 16 14 N -0.51 -24.14 9.52 -191.08 -1.82 -25.96 16 15 C 0.01 0.41 10.97 85.37 0.94 1.35 16 16 C 0.01 0.51 5.59 -21.18 -0.12 0.39 16 17 C -0.48 -24.83 9.07 23.39 0.21 -24.62 16 18 H 0.09 4.20 7.90 -2.91 -0.02 4.17 16 19 C 0.03 1.63 5.18 85.23 0.44 2.07 16 20 N -0.83 -42.54 10.91 21.82 0.24 -42.30 16 21 Si 0.98 37.20 29.59 68.60 2.03 39.23 16 22 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 25 C -0.10 -5.29 8.52 22.65 0.19 -5.10 16 26 C -0.12 -5.48 6.32 22.28 0.14 -5.33 16 27 Cl -0.09 -3.37 27.56 -2.72 -0.07 -3.44 16 28 H 0.05 1.09 7.68 -2.38 -0.02 1.07 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.13 6.40 -2.39 -0.02 1.11 16 31 H 0.08 1.15 8.02 -2.39 -0.02 1.13 16 32 H 0.06 1.06 7.54 -2.39 -0.02 1.04 16 33 H 0.35 4.28 8.10 -89.69 -0.73 3.55 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.12 6.66 -2.38 -0.02 1.11 16 36 H 0.07 1.00 6.77 -2.39 -0.02 0.98 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.23 7.46 -2.39 -0.02 1.21 16 39 H 0.05 1.18 7.94 -2.39 -0.02 1.17 16 40 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 41 H 0.05 1.72 5.96 -2.39 -0.01 1.71 16 42 H 0.40 13.39 6.25 -92.71 -0.58 12.81 16 43 H 0.15 6.58 8.06 -2.91 -0.02 6.55 16 44 H 0.29 13.38 8.30 -92.70 -0.77 12.61 16 45 H 0.12 6.73 6.20 -2.91 -0.02 6.71 16 Total: -1.00 -56.57 356.34 -0.18 -56.75 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.28 Total: 37.17 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.96 Total: -19.31 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -6.81 Total: -110.39 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.07 Total: -3.44 kcal Total: -56.57 -0.18 -56.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.083 kcal (2) G-P(sol) polarization free energy of solvation -56.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds