Wall clock time and date at job start Tue Mar 31 2020 14:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.54634 * 2 1 4 4 C 1.54440 * 109.61602 * 239.77849 * 2 1 3 5 5 N 1.39786 * 111.76273 * 162.69928 * 4 2 1 6 6 C 1.47625 * 114.76591 * 62.27304 * 5 4 2 7 7 C 1.50753 * 107.97348 * 277.19737 * 6 5 4 8 8 C 1.53822 * 111.65004 * 95.16333 * 7 6 5 9 9 C 1.50749 * 109.54514 * 120.18199 * 2 1 3 10 10 H 1.09002 * 108.85784 * 92.16133 * 9 2 1 11 11 C 1.52999 * 108.77407 * 333.71627 * 9 2 1 12 12 N 1.46502 * 109.47187 * 171.96263 * 11 9 2 13 13 C 1.38407 * 119.99826 * 180.02562 * 12 11 9 14 14 N 1.32746 * 119.43962 * 359.97438 * 13 12 11 15 15 C 1.31463 * 121.74539 * 179.97438 * 14 13 12 16 16 C 1.40796 * 120.38390 * 0.02562 * 15 14 13 17 17 C 1.41198 * 120.56026 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00372 * 335.70383 * 17 16 15 19 19 C 1.39868 * 119.99624 * 155.70532 * 17 16 15 20 20 N 1.30908 * 120.00171 * 343.31145 * 19 17 16 21 21 Si 1.86799 * 119.99819 * 163.30588 * 19 17 16 22 22 H 1.48500 * 109.47125 * 60.00407 * 21 19 17 23 23 H 1.48507 * 109.46968 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47528 * 300.00113 * 21 19 17 25 25 C 1.41280 * 118.87160 * 359.97438 * 16 15 14 26 26 C 1.36670 * 118.40205 * 359.75190 * 25 16 15 27 27 Cl 1.73591 * 120.26554 * 180.24076 * 26 25 16 28 28 H 1.08993 * 109.47248 * 299.81572 * 1 2 3 29 29 H 1.08997 * 109.47296 * 59.82144 * 1 2 3 30 30 H 1.09005 * 109.47105 * 179.81898 * 1 2 3 31 31 H 1.08992 * 109.02143 * 283.28184 * 4 2 1 32 32 H 1.08997 * 109.02420 * 42.10905 * 4 2 1 33 33 H 1.00905 * 110.99878 * 295.41876 * 5 4 2 34 34 H 1.09000 * 109.75074 * 36.81837 * 6 5 4 35 35 H 1.09005 * 109.74464 * 157.54594 * 6 5 4 36 36 H 1.09002 * 109.09875 * 334.56459 * 7 6 5 37 37 H 1.09001 * 108.97535 * 215.68100 * 7 6 5 38 38 H 1.08996 * 108.97975 * 198.32582 * 8 7 6 39 39 H 1.09003 * 108.98190 * 79.52285 * 8 7 6 40 40 H 1.09001 * 109.47173 * 291.96285 * 11 9 2 41 41 H 1.08996 * 109.46932 * 51.96248 * 11 9 2 42 42 H 0.96991 * 119.99824 * 0.02562 * 12 11 9 43 43 H 1.08000 * 119.80873 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99355 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.79922 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0484 -0.7323 -1.2570 5 7 3.3900 -0.4349 -1.5137 6 6 4.3294 -0.8513 -0.4537 7 6 4.3301 0.2147 0.6123 8 6 3.3579 -0.1248 1.7549 9 6 2.0343 -0.7142 1.2280 10 1 2.1888 -1.7656 0.9856 11 6 0.9750 -0.6115 2.3273 12 7 1.3615 -1.4583 3.4585 13 6 0.5517 -1.5284 4.5788 14 7 -0.5723 -0.8232 4.6166 15 6 -1.3750 -0.8563 5.6572 16 6 -1.0590 -1.6515 6.7753 17 6 -1.9182 -1.6894 7.8952 18 1 -2.5845 -0.8629 8.0928 19 6 -1.9061 -2.7975 8.7486 20 7 -1.3622 -3.9212 8.3546 21 14 -2.6661 -2.6739 10.4505 22 1 -4.1060 -2.3326 10.3260 23 1 -2.5242 -3.9753 11.1516 24 1 -1.9719 -1.6155 11.2271 25 6 0.1323 -2.4108 6.7577 26 6 0.9287 -2.3450 5.6489 27 17 2.4002 -3.2628 5.5730 28 1 -0.3633 0.5109 0.8916 29 1 -0.3634 0.5166 -0.8883 30 1 -0.3633 -1.0277 -0.0032 31 1 1.9447 -1.8072 -1.1101 32 1 1.4476 -0.4328 -2.1158 33 1 3.5074 0.5419 -1.7376 34 1 4.0052 -1.8001 -0.0261 35 1 5.3311 -0.9575 -0.8703 36 1 4.0370 1.1651 0.1664 37 1 5.3372 0.3091 1.0183 38 1 3.1423 0.7830 2.3184 39 1 3.8296 -0.8498 2.4182 40 1 0.8949 0.4237 2.6591 41 1 0.0130 -0.9433 1.9369 42 1 2.1847 -1.9699 3.4224 43 1 -2.2816 -0.2694 5.6548 44 1 -1.3543 -4.6897 8.9464 45 1 0.4052 -3.0310 7.5986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155031073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:46 Heat of formation + Delta-G solvation = 12.031144 kcal Electronic energy + Delta-G solvation = -25255.438244 eV Core-core repulsion = 21718.441524 eV Total energy + Delta-G solvation = -3536.996719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02225 -38.65703 -35.91517 -35.56549 -34.22871 -33.48093 -32.68302 -30.51720 -29.42434 -27.90948 -26.73793 -24.72645 -23.99969 -23.07786 -21.58165 -21.46882 -20.90423 -18.90213 -17.44746 -16.94675 -16.14305 -15.95051 -15.37457 -15.22558 -15.11664 -14.61919 -14.27693 -13.75766 -13.63740 -13.45689 -13.03469 -12.93268 -12.65169 -12.60468 -12.28342 -12.02767 -11.80986 -11.75647 -11.58436 -11.39730 -11.21479 -11.12818 -11.06339 -10.96743 -10.76840 -10.51731 -10.44799 -10.30666 -10.24379 -9.86000 -9.46511 -8.78826 -8.40925 -8.28573 -8.14551 -6.91979 -6.68409 -4.31525 2.50741 2.80834 3.04318 3.06421 3.17470 3.19805 3.88602 4.13986 4.17225 4.51009 4.56449 4.72728 4.76198 4.86608 4.99355 5.08630 5.28106 5.45291 5.49744 5.51581 5.53492 5.55590 5.73771 5.81416 5.84150 5.86179 5.93789 6.05179 6.06596 6.11044 6.21310 6.23156 6.31451 6.43230 6.50430 6.62991 6.93680 7.06794 7.07270 7.15360 7.31836 7.64239 7.68396 8.11670 8.35794 8.42581 8.67610 8.72258 9.53255 10.12717 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.002914 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.700383 B = 9606.859206 C =10353.328658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.068 0.932 4 C 0.079 3.921 5 N -0.700 5.700 6 C 0.065 3.935 7 C -0.151 4.151 8 C -0.111 4.111 9 C -0.095 4.095 10 H 0.069 0.931 11 C 0.147 3.853 12 N -0.742 5.742 13 C 0.292 3.708 14 N -0.503 5.503 15 C 0.015 3.985 16 C 0.038 3.962 17 C -0.454 4.454 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.799 5.799 21 Si 0.911 3.089 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.087 4.087 26 C -0.105 4.105 27 Cl -0.116 7.116 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.341 0.659 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.394 0.606 43 H 0.134 0.866 44 H 0.283 0.717 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 4.934 -12.787 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 H 0.087 0.913 4 C -0.053 4.053 5 N -0.329 5.329 6 C -0.064 4.064 7 C -0.190 4.190 8 C -0.149 4.149 9 C -0.114 4.114 10 H 0.087 0.913 11 C 0.023 3.977 12 N -0.383 5.383 13 C 0.059 3.941 14 N -0.219 5.219 15 C -0.144 4.144 16 C 0.032 3.968 17 C -0.484 4.484 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.425 5.425 21 Si 0.736 3.264 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.114 4.114 26 C -0.137 4.137 27 Cl -0.088 7.088 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.230 0.770 43 H 0.151 0.849 44 H 0.094 0.906 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.791 4.659 -13.851 16.561 hybrid contribution 0.072 -0.238 2.349 2.362 sum 7.863 4.422 -11.502 14.617 Atomic orbital electron populations 1.21952 0.94652 1.02180 1.01892 1.21855 0.96695 0.99937 0.95924 0.91330 1.21045 0.88368 1.00130 0.95748 1.57668 1.06180 1.24904 1.44142 1.21745 0.96287 0.98315 0.90004 1.22122 0.99850 0.99339 0.97725 1.21948 0.94502 1.01294 0.97154 1.21287 0.94894 1.00139 0.95044 0.91283 1.21356 0.96491 0.94623 0.85263 1.43845 1.25493 1.53266 1.15684 1.17441 0.92053 0.97129 0.87514 1.66770 1.03592 1.22543 1.28985 1.22357 0.98461 1.04446 0.89112 1.18290 0.91996 0.92877 0.93650 1.19292 1.19236 1.03075 1.06835 0.90013 1.25894 0.94215 0.94343 0.99969 1.69788 1.35311 1.01192 1.36254 0.86314 0.80242 0.78427 0.81461 1.18958 1.20362 1.18851 1.21308 0.92583 1.01245 0.96308 1.20941 0.91184 1.02696 0.98915 1.98236 1.37693 1.74489 1.98413 0.91446 0.93179 0.92341 0.91435 0.91164 0.83861 0.90715 0.90920 0.92149 0.91860 0.91898 0.91976 0.93370 0.92015 0.77021 0.84893 0.90638 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.72 37.15 0.29 -1.29 16 2 C -0.12 -1.23 2.32 -91.00 -0.21 -1.44 16 3 H 0.07 0.68 7.10 -51.93 -0.37 0.31 16 4 C 0.08 0.72 5.39 -6.74 -0.04 0.69 16 5 N -0.70 -6.11 6.38 -118.57 -0.76 -6.87 16 6 C 0.06 0.56 6.29 -4.55 -0.03 0.54 16 7 C -0.15 -1.34 5.38 -27.43 -0.15 -1.48 16 8 C -0.11 -1.23 4.96 -25.69 -0.13 -1.36 16 9 C -0.09 -1.11 1.61 -91.13 -0.15 -1.26 16 10 H 0.07 0.85 6.58 -51.93 -0.34 0.51 16 11 C 0.15 2.28 3.75 -4.04 -0.02 2.26 16 12 N -0.74 -13.53 5.43 -60.32 -0.33 -13.85 16 13 C 0.29 6.53 7.48 -155.05 -1.16 5.37 16 14 N -0.50 -11.74 9.52 -11.75 -0.11 -11.85 16 15 C 0.01 0.36 10.97 -16.74 -0.18 0.17 16 16 C 0.04 0.96 5.59 -106.65 -0.60 0.36 16 17 C -0.45 -11.45 9.07 -37.85 -0.34 -11.79 16 18 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 19 C 0.07 1.77 5.19 -17.34 -0.09 1.68 16 20 N -0.80 -20.10 10.91 55.54 0.61 -19.50 16 21 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.09 -2.20 8.52 -38.99 -0.33 -2.54 16 26 C -0.10 -2.42 6.32 -39.57 -0.25 -2.67 16 27 Cl -0.12 -2.28 27.56 -51.86 -1.43 -3.71 16 28 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 31 H 0.07 0.69 7.54 -51.93 -0.39 0.30 16 32 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 33 H 0.34 2.60 8.10 -39.29 -0.32 2.28 16 34 H 0.07 0.72 6.66 -51.93 -0.35 0.38 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.51 6.76 -51.93 -0.35 0.16 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 39 H 0.06 0.73 7.62 -51.93 -0.40 0.34 16 40 H 0.05 0.81 7.89 -51.93 -0.41 0.40 16 41 H 0.06 1.02 5.73 -51.93 -0.30 0.72 16 42 H 0.39 6.71 6.44 -40.82 -0.26 6.45 16 43 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 45 H 0.14 3.63 6.20 -52.49 -0.33 3.31 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -26.12 356.57 -11.66 -37.78 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.61 Total: 12.28 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -3.38 Total: -12.77 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.59 Total: -52.07 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.43 Total: -3.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.12 -11.66 -37.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.813 kcal (2) G-P(sol) polarization free energy of solvation -26.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds