Wall clock time and date at job start Tue Mar 31 2020 14:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.54634 * 2 1 4 4 C 1.54440 * 109.61602 * 239.77849 * 2 1 3 5 5 N 1.39786 * 111.76273 * 162.69928 * 4 2 1 6 6 C 1.47625 * 114.76591 * 62.27304 * 5 4 2 7 7 C 1.50753 * 107.97348 * 277.19737 * 6 5 4 8 8 C 1.53822 * 111.65004 * 95.16333 * 7 6 5 9 9 C 1.50749 * 109.54514 * 120.18199 * 2 1 3 10 10 H 1.09002 * 108.85784 * 92.16133 * 9 2 1 11 11 C 1.52999 * 108.77407 * 333.71627 * 9 2 1 12 12 N 1.46502 * 109.47187 * 171.96263 * 11 9 2 13 13 C 1.38407 * 119.99826 * 180.02562 * 12 11 9 14 14 N 1.32746 * 119.43962 * 359.97438 * 13 12 11 15 15 C 1.31463 * 121.74539 * 179.97438 * 14 13 12 16 16 C 1.40796 * 120.38390 * 0.02562 * 15 14 13 17 17 C 1.41198 * 120.56026 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00372 * 335.70383 * 17 16 15 19 19 C 1.39868 * 119.99624 * 155.70532 * 17 16 15 20 20 N 1.30908 * 120.00171 * 343.31145 * 19 17 16 21 21 Si 1.86799 * 119.99819 * 163.30588 * 19 17 16 22 22 H 1.48500 * 109.47125 * 60.00407 * 21 19 17 23 23 H 1.48507 * 109.46968 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47528 * 300.00113 * 21 19 17 25 25 C 1.41280 * 118.87160 * 359.97438 * 16 15 14 26 26 C 1.36670 * 118.40205 * 359.75190 * 25 16 15 27 27 Cl 1.73591 * 120.26554 * 180.24076 * 26 25 16 28 28 H 1.08993 * 109.47248 * 299.81572 * 1 2 3 29 29 H 1.08997 * 109.47296 * 59.82144 * 1 2 3 30 30 H 1.09005 * 109.47105 * 179.81898 * 1 2 3 31 31 H 1.08992 * 109.02143 * 283.28184 * 4 2 1 32 32 H 1.08997 * 109.02420 * 42.10905 * 4 2 1 33 33 H 1.00905 * 110.99878 * 295.41876 * 5 4 2 34 34 H 1.09000 * 109.75074 * 36.81837 * 6 5 4 35 35 H 1.09005 * 109.74464 * 157.54594 * 6 5 4 36 36 H 1.09002 * 109.09875 * 334.56459 * 7 6 5 37 37 H 1.09001 * 108.97535 * 215.68100 * 7 6 5 38 38 H 1.08996 * 108.97975 * 198.32582 * 8 7 6 39 39 H 1.09003 * 108.98190 * 79.52285 * 8 7 6 40 40 H 1.09001 * 109.47173 * 291.96285 * 11 9 2 41 41 H 1.08996 * 109.46932 * 51.96248 * 11 9 2 42 42 H 0.96991 * 119.99824 * 0.02562 * 12 11 9 43 43 H 1.08000 * 119.80873 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99355 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.79922 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0484 -0.7323 -1.2570 5 7 3.3900 -0.4349 -1.5137 6 6 4.3294 -0.8513 -0.4537 7 6 4.3301 0.2147 0.6123 8 6 3.3579 -0.1248 1.7549 9 6 2.0343 -0.7142 1.2280 10 1 2.1888 -1.7656 0.9856 11 6 0.9750 -0.6115 2.3273 12 7 1.3615 -1.4583 3.4585 13 6 0.5517 -1.5284 4.5788 14 7 -0.5723 -0.8232 4.6166 15 6 -1.3750 -0.8563 5.6572 16 6 -1.0590 -1.6515 6.7753 17 6 -1.9182 -1.6894 7.8952 18 1 -2.5845 -0.8629 8.0928 19 6 -1.9061 -2.7975 8.7486 20 7 -1.3622 -3.9212 8.3546 21 14 -2.6661 -2.6739 10.4505 22 1 -4.1060 -2.3326 10.3260 23 1 -2.5242 -3.9753 11.1516 24 1 -1.9719 -1.6155 11.2271 25 6 0.1323 -2.4108 6.7577 26 6 0.9287 -2.3450 5.6489 27 17 2.4002 -3.2628 5.5730 28 1 -0.3633 0.5109 0.8916 29 1 -0.3634 0.5166 -0.8883 30 1 -0.3633 -1.0277 -0.0032 31 1 1.9447 -1.8072 -1.1101 32 1 1.4476 -0.4328 -2.1158 33 1 3.5074 0.5419 -1.7376 34 1 4.0052 -1.8001 -0.0261 35 1 5.3311 -0.9575 -0.8703 36 1 4.0370 1.1651 0.1664 37 1 5.3372 0.3091 1.0183 38 1 3.1423 0.7830 2.3184 39 1 3.8296 -0.8498 2.4182 40 1 0.8949 0.4237 2.6591 41 1 0.0130 -0.9433 1.9369 42 1 2.1847 -1.9699 3.4224 43 1 -2.2816 -0.2694 5.6548 44 1 -1.3543 -4.6897 8.9464 45 1 0.4052 -3.0310 7.5986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155031073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:45 Heat of formation + Delta-G solvation = -1.868860 kcal Electronic energy + Delta-G solvation = -25256.040993 eV Core-core repulsion = 21718.441524 eV Total energy + Delta-G solvation = -3537.599469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00803 -40.34280 -37.35043 -37.15533 -35.79148 -34.51398 -33.89583 -32.37806 -31.08103 -28.92088 -27.94299 -26.38634 -24.89072 -24.34907 -23.23846 -22.67283 -22.17347 -19.89732 -19.30372 -18.39737 -17.61917 -17.08130 -16.78130 -16.23692 -16.06630 -16.00693 -15.83435 -15.18954 -15.00854 -14.85002 -14.25845 -14.06340 -13.85200 -13.70624 -13.61799 -13.43101 -13.24104 -13.19488 -12.86246 -12.74477 -12.65667 -12.47083 -12.38904 -12.04920 -11.92829 -11.85740 -11.64705 -11.48012 -11.31260 -11.24548 -11.07680 -10.48128 -10.13510 -10.00062 -9.12576 -8.71934 -8.44660 -6.20153 0.64098 0.98877 1.40033 1.41917 1.52296 1.55974 2.22480 2.64693 2.73801 3.44230 3.61967 3.64016 3.78497 3.86002 4.05943 4.14193 4.19207 4.29896 4.45181 4.49384 4.54646 4.65662 4.66169 4.72931 4.75066 4.86039 4.94366 4.96416 5.03360 5.06925 5.08889 5.13098 5.23084 5.24806 5.26362 5.29922 5.37260 5.42697 5.51077 5.78909 5.79106 6.32606 6.38558 6.59177 6.67372 6.74756 6.83095 6.88579 7.71570 8.33709 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.002914 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.700383 B = 9606.859206 C =10353.328658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.086 3.914 5 N -0.701 5.701 6 C 0.066 3.934 7 C -0.143 4.143 8 C -0.110 4.110 9 C -0.083 4.083 10 H 0.066 0.934 11 C 0.150 3.850 12 N -0.732 5.732 13 C 0.294 3.706 14 N -0.511 5.511 15 C 0.008 3.992 16 C 0.010 3.990 17 C -0.483 4.483 18 H 0.086 0.914 19 C 0.034 3.966 20 N -0.832 5.832 21 Si 0.983 3.017 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.261 1.261 25 C -0.103 4.103 26 C -0.117 4.117 27 Cl -0.087 7.087 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.351 0.649 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.401 0.599 43 H 0.147 0.853 44 H 0.288 0.712 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 5.416 -13.842 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 H 0.093 0.907 4 C -0.046 4.046 5 N -0.331 5.331 6 C -0.062 4.062 7 C -0.181 4.181 8 C -0.147 4.147 9 C -0.102 4.102 10 H 0.085 0.915 11 C 0.027 3.973 12 N -0.373 5.373 13 C 0.058 3.942 14 N -0.227 5.227 15 C -0.150 4.150 16 C 0.004 3.996 17 C -0.514 4.514 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.458 5.458 21 Si 0.804 3.196 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.186 1.186 25 C -0.130 4.130 26 C -0.150 4.150 27 Cl -0.059 7.059 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.172 0.828 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.237 0.763 43 H 0.164 0.836 44 H 0.099 0.901 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.642 5.152 -14.947 18.018 hybrid contribution -0.091 -0.396 2.554 2.586 sum 8.551 4.757 -12.393 15.791 Atomic orbital electron populations 1.21908 0.95068 1.01612 1.01875 1.21830 0.96216 1.00159 0.95487 0.90683 1.20961 0.88833 0.99321 0.95445 1.57669 1.05774 1.25659 1.43967 1.21743 0.96881 0.97634 0.89941 1.22050 0.99527 0.99716 0.96851 1.21918 0.94539 1.00342 0.97933 1.21224 0.94116 1.00463 0.94360 0.91521 1.21460 0.97524 0.93158 0.85207 1.43967 1.24975 1.53154 1.15176 1.17745 0.91948 0.96121 0.88339 1.66836 1.04043 1.23058 1.28772 1.22599 0.99064 1.04367 0.88964 1.18579 0.92627 0.93815 0.94532 1.19566 1.20079 1.03932 1.07821 0.89567 1.26722 0.94408 0.93524 1.03387 1.69851 1.36408 1.01907 1.37676 0.85226 0.79479 0.78518 0.76376 1.18215 1.19659 1.18576 1.21253 0.93281 1.01733 0.96731 1.21019 0.92263 1.03120 0.98595 1.98230 1.35585 1.73712 1.98344 0.93316 0.91332 0.93188 0.92449 0.89957 0.82811 0.91794 0.89674 0.91313 0.90949 0.93118 0.92813 0.94599 0.92979 0.76260 0.83557 0.90114 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 7.72 71.98 0.56 -2.40 16 2 C -0.12 -2.12 2.32 -11.04 -0.03 -2.15 16 3 H 0.07 1.32 7.10 -2.39 -0.02 1.31 16 4 C 0.09 1.39 5.39 88.07 0.47 1.87 16 5 N -0.70 -10.39 6.38 -529.06 -3.37 -13.77 16 6 C 0.07 0.99 6.29 85.43 0.54 1.53 16 7 C -0.14 -2.19 5.38 30.14 0.16 -2.03 16 8 C -0.11 -2.29 4.96 31.27 0.16 -2.14 16 9 C -0.08 -1.86 1.61 -11.13 -0.02 -1.88 16 10 H 0.07 1.57 6.58 -2.39 -0.02 1.55 16 11 C 0.15 4.63 3.75 86.38 0.32 4.95 16 12 N -0.73 -26.57 5.43 -344.75 -1.87 -28.44 16 13 C 0.29 13.21 7.48 133.32 1.00 14.21 16 14 N -0.51 -24.14 9.52 -191.08 -1.82 -25.95 16 15 C 0.01 0.40 10.97 85.37 0.94 1.34 16 16 C 0.01 0.53 5.59 -21.18 -0.12 0.42 16 17 C -0.48 -24.92 9.07 23.39 0.21 -24.71 16 18 H 0.09 4.19 7.90 -2.91 -0.02 4.17 16 19 C 0.03 1.65 5.19 85.23 0.44 2.09 16 20 N -0.83 -42.59 10.91 21.82 0.24 -42.35 16 21 Si 0.98 37.18 29.59 68.60 2.03 39.21 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.10 -5.32 8.52 22.65 0.19 -5.13 16 26 C -0.12 -5.47 6.32 22.28 0.14 -5.33 16 27 Cl -0.09 -3.37 27.56 -2.72 -0.07 -3.44 16 28 H 0.05 1.16 6.41 -2.39 -0.02 1.14 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.08 7.69 -2.38 -0.02 1.06 16 31 H 0.06 1.06 7.54 -2.39 -0.02 1.05 16 32 H 0.08 1.17 8.02 -2.39 -0.02 1.15 16 33 H 0.35 4.25 8.10 -89.69 -0.73 3.53 16 34 H 0.06 1.12 6.66 -2.39 -0.02 1.10 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 0.97 6.76 -2.39 -0.02 0.95 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.19 7.89 -2.39 -0.02 1.17 16 39 H 0.05 1.21 7.62 -2.39 -0.02 1.19 16 40 H 0.04 1.21 7.89 -2.39 -0.02 1.19 16 41 H 0.05 1.73 5.73 -2.39 -0.01 1.72 16 42 H 0.40 13.39 6.44 -92.72 -0.60 12.80 16 43 H 0.15 6.58 8.06 -2.91 -0.02 6.55 16 44 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 45 H 0.12 6.73 6.20 -2.91 -0.02 6.71 16 Total: -1.00 -56.52 356.57 -0.20 -56.72 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.30 Total: 37.39 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.97 Total: -19.36 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -6.83 Total: -110.51 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.07 Total: -3.44 kcal Total: -56.52 -0.20 -56.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155031073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.850 kcal (2) G-P(sol) polarization free energy of solvation -56.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds