Wall clock time and date at job start Tue Mar 31 2020 14:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46549 * 2 1 4 4 C 1.36944 * 119.99901 * 275.72582 * 3 2 1 5 5 H 1.08003 * 119.99361 * 33.27514 * 4 3 2 6 6 C 1.38808 * 120.00346 * 213.27499 * 4 3 2 7 7 N 1.31624 * 119.99895 * 17.27600 * 6 4 3 8 8 Si 1.86796 * 120.00048 * 197.28210 * 6 4 3 9 9 H 1.48504 * 109.46988 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47535 * 119.99886 * 8 6 4 11 11 H 1.48503 * 109.47035 * 240.00059 * 8 6 4 12 12 C 1.46498 * 120.00304 * 95.73668 * 3 2 1 13 13 H 1.09002 * 109.46922 * 180.08254 * 12 3 2 14 14 C 1.53000 * 109.47112 * 60.08137 * 12 3 2 15 15 C 1.52996 * 109.46763 * 300.08203 * 12 3 2 16 16 N 1.46494 * 109.47498 * 304.99841 * 15 12 3 17 17 C 1.34773 * 120.00573 * 180.02562 * 16 15 12 18 18 O 1.21613 * 119.99959 * 0.02562 * 17 16 15 19 19 C 1.47343 * 120.00471 * 180.02562 * 17 16 15 20 20 C 1.39551 * 120.55275 * 359.97438 * 19 17 16 21 21 N 1.31605 * 120.66784 * 179.97438 * 20 19 17 22 22 C 1.32599 * 121.98169 * 0.02562 * 21 20 19 23 23 O 1.35512 * 119.47871 * 179.97438 * 22 21 20 24 24 C 1.38716 * 121.04813 * 0.27333 * 22 21 20 25 25 C 1.38823 * 119.19792 * 359.45794 * 24 22 21 26 26 O 1.35528 * 120.88922 * 180.26073 * 25 24 22 27 27 C 1.42892 * 117.00365 * 0.27038 * 26 25 24 28 28 H 1.09007 * 109.46924 * 299.99822 * 1 2 3 29 29 H 1.08991 * 109.47317 * 60.00398 * 1 2 3 30 30 H 1.08997 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47288 * 239.99876 * 2 1 3 32 32 H 1.08998 * 109.46938 * 119.99485 * 2 1 3 33 33 H 0.97000 * 119.99537 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47323 * 299.99872 * 14 12 3 35 35 H 1.09003 * 109.47361 * 60.00602 * 14 12 3 36 36 H 1.09002 * 109.47021 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.47062 * 185.00005 * 15 12 3 38 38 H 1.09002 * 109.47448 * 65.00665 * 15 12 3 39 39 H 0.97004 * 119.99783 * 0.02562 * 16 15 12 40 40 H 1.08000 * 119.66242 * 359.96430 * 20 19 17 41 41 H 0.96702 * 114.00380 * 89.99534 * 23 22 21 42 42 H 1.07999 * 120.39659 * 179.72424 * 24 22 21 43 43 H 1.09001 * 109.47281 * 179.97438 * 27 26 25 44 44 H 1.09000 * 109.47277 * 300.00434 * 27 26 25 45 45 H 1.09005 * 109.47061 * 60.00784 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0663 -1.1801 5 1 1.4369 1.8810 -1.9832 6 6 3.1500 2.9987 -1.3440 7 7 4.1871 2.9918 -0.5335 8 14 3.0442 4.2633 -2.7147 9 1 1.7883 4.0592 -3.4806 10 1 3.0520 5.6284 -2.1306 11 1 4.2084 4.1070 -3.6233 12 6 2.3819 2.0297 1.2623 13 1 2.7189 3.0472 1.0642 14 6 3.5077 1.2415 1.9348 15 6 1.1630 2.0669 2.1862 16 7 0.0466 2.7173 1.4958 17 6 -1.1387 2.8639 2.1204 18 8 -1.2813 2.4565 3.2574 19 6 -2.2617 3.5176 1.4258 20 6 -2.1107 3.9898 0.1214 21 7 -3.1125 4.5736 -0.5013 22 6 -4.2960 4.7390 0.0733 23 8 -5.2921 5.3477 -0.6148 24 6 -4.5288 4.3043 1.3698 25 6 -3.5058 3.6768 2.0677 26 8 -3.6973 3.2339 3.3342 27 6 -4.9915 3.4381 3.9042 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 4.8962 3.6437 -0.6479 34 1 3.1708 0.2239 2.1329 35 1 4.3762 1.2150 1.2766 36 1 3.7786 1.7242 2.8738 37 1 1.4080 2.6270 3.0886 38 1 0.8802 1.0493 2.4558 39 1 0.1604 3.0426 0.5891 40 1 -1.1622 3.8751 -0.3821 41 1 -5.8431 4.7412 -1.1285 42 1 -5.4955 4.4483 1.8292 43 1 -5.0094 3.0379 4.9179 44 1 -5.2127 4.5051 3.9305 45 1 -5.7400 2.9267 3.2989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155314478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:23 Heat of formation + Delta-G solvation = -49.012636 kcal Electronic energy + Delta-G solvation = -28722.686339 eV Core-core repulsion = 24742.333398 eV Total energy + Delta-G solvation = -3980.352941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08743 -39.03313 -38.80228 -37.01679 -36.70477 -33.65271 -31.89966 -31.74659 -31.35652 -30.39116 -28.17439 -27.78258 -25.67580 -23.99102 -23.84996 -23.01901 -21.68880 -20.29582 -19.48683 -19.25661 -17.75449 -17.54497 -17.00552 -16.66627 -16.13641 -15.45635 -15.23210 -14.95164 -14.78945 -14.67545 -14.49725 -14.06078 -13.65961 -13.20915 -13.04432 -12.80075 -12.67319 -12.29365 -12.14040 -12.04527 -11.81177 -11.78090 -11.68912 -11.48827 -11.05831 -10.93048 -10.80103 -10.67206 -10.26233 -10.08383 -9.92565 -9.62736 -9.41923 -9.34551 -9.25949 -8.98814 -8.51307 -8.33717 -6.66528 -5.87952 -3.36855 0.49810 1.09319 2.88040 2.96644 3.32706 3.40816 3.43323 3.44242 3.66343 3.85249 4.37315 4.43060 4.57824 4.75406 4.84565 4.87454 5.17491 5.24127 5.27191 5.31260 5.39556 5.40735 5.65377 5.93637 6.07352 6.14642 6.20763 6.28070 6.39799 6.50395 6.56360 6.63799 6.69949 6.84865 6.92698 6.94932 7.07287 7.17865 7.21678 7.49333 7.58770 7.73070 7.78418 8.14071 8.43566 8.73150 9.16645 9.78018 10.35216 11.18480 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.004475 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.737716 B = 6255.016984 C = 7607.747352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.264 4.264 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.697 5.697 17 C 0.557 3.443 18 O -0.537 6.537 19 C -0.225 4.225 20 C 0.200 3.800 21 N -0.526 5.526 22 C 0.363 3.637 23 O -0.481 6.481 24 C -0.292 4.292 25 C 0.233 3.767 26 O -0.269 6.269 27 C 0.018 3.982 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.408 0.592 40 H 0.178 0.822 41 H 0.404 0.596 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 0.616 4.885 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.394 4.394 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.349 5.349 17 C 0.342 3.658 18 O -0.416 6.416 19 C -0.232 4.232 20 C 0.041 3.959 21 N -0.248 5.248 22 C 0.185 3.815 23 O -0.289 6.289 24 C -0.315 4.315 25 C 0.177 3.823 26 O -0.177 6.177 27 C -0.077 4.077 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.246 0.754 40 H 0.195 0.805 41 H 0.263 0.737 42 H 0.166 0.834 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.983 1.126 5.270 16.867 hybrid contribution -0.595 0.305 -0.636 0.923 sum -16.579 1.431 4.634 17.273 Atomic orbital electron populations 1.22460 1.00074 0.99004 1.01541 1.20750 0.91628 0.87454 0.98719 1.43905 1.75991 1.08287 1.02273 1.19138 1.08688 1.18188 0.93394 0.91711 1.25150 0.94513 1.01325 0.97747 1.70018 1.07860 1.35828 1.39494 0.86388 0.77762 0.81663 0.81975 1.19967 1.21459 1.21736 1.20507 0.88890 0.99575 0.84201 0.88194 1.22017 1.01105 0.97951 0.99247 1.22185 0.87854 0.96303 0.95802 1.45885 1.10780 1.59252 1.18945 1.17614 0.82354 0.79797 0.86000 1.90784 1.82976 1.50149 1.17682 1.20686 0.94483 1.10892 0.97100 1.22888 0.96777 0.87280 0.88907 1.67241 1.00573 1.17815 1.39199 1.19009 0.86939 0.87783 0.87731 1.84695 1.42137 1.36316 1.65747 1.22039 1.01605 1.09699 0.98136 1.19139 0.91634 0.87458 0.84045 1.86410 1.33354 1.73987 1.23947 1.23247 0.83059 1.01702 0.99700 0.92931 0.93449 0.94919 0.94124 0.94520 0.93601 0.95141 0.90292 0.94840 0.92796 0.92678 0.75422 0.80528 0.73696 0.83365 0.87556 0.92291 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.87 37.16 0.37 -2.69 16 2 C 0.14 2.80 5.67 -4.04 -0.02 2.77 16 3 N -0.58 -12.79 1.85 -165.66 -0.31 -13.09 16 4 C -0.26 -6.40 9.26 -15.06 -0.14 -6.54 16 5 H 0.07 1.58 7.89 -52.48 -0.41 1.17 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -23.27 10.60 55.49 0.59 -22.68 16 8 Si 0.89 20.11 29.59 -169.99 -5.03 15.08 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.18 3.69 1.92 -67.93 -0.13 3.56 16 13 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 14 C -0.14 -2.90 9.05 37.16 0.34 -2.57 16 15 C 0.10 1.97 4.34 -4.05 -0.02 1.96 16 16 N -0.70 -12.62 3.94 -61.42 -0.24 -12.86 16 17 C 0.56 10.16 7.53 -12.56 -0.09 10.07 16 18 O -0.54 -11.24 15.28 -16.03 -0.24 -11.48 16 19 C -0.23 -3.56 5.90 -104.70 -0.62 -4.18 16 20 C 0.20 2.98 10.71 -17.16 -0.18 2.80 16 21 N -0.53 -7.80 10.36 -13.04 -0.14 -7.94 16 22 C 0.36 4.58 7.73 -17.04 -0.13 4.45 16 23 O -0.48 -4.90 13.54 -18.23 -0.25 -5.15 16 24 C -0.29 -3.38 9.02 -39.19 -0.35 -3.73 16 25 C 0.23 3.31 6.74 -38.36 -0.26 3.05 16 26 O -0.27 -3.81 8.71 -39.58 -0.34 -4.15 16 27 C 0.02 0.15 9.84 101.05 0.99 1.14 16 28 H 0.05 0.97 4.99 -51.92 -0.26 0.71 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.70 6.45 -51.93 -0.33 0.37 16 33 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 35 H 0.08 1.81 7.39 -51.93 -0.38 1.43 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.07 7.05 -51.93 -0.37 0.71 16 39 H 0.41 7.39 5.95 -40.82 -0.24 7.15 16 40 H 0.18 2.54 6.41 -52.49 -0.34 2.20 16 41 H 0.40 1.97 9.06 45.56 0.41 2.38 16 42 H 0.15 1.25 6.45 -52.49 -0.34 0.91 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 45 H 0.06 0.38 7.72 -51.93 -0.40 -0.02 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -30.92 364.48 -6.20 -37.12 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.39 Total: 9.33 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -0.34 Total: 10.34 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.09 Total: -56.57 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.84 Total: -20.79 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.92 -6.20 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155314478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.895 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds