Wall clock time and date at job start Tue Mar 31 2020 14:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47025 * 2 1 4 4 C 1.36935 * 119.99866 * 275.78200 * 3 2 1 5 5 H 1.07999 * 120.00233 * 33.64822 * 4 3 2 6 6 C 1.38812 * 119.99948 * 213.65070 * 4 3 2 7 7 N 1.31618 * 120.00339 * 16.99039 * 6 4 3 8 8 Si 1.86805 * 120.00118 * 196.99288 * 6 4 3 9 9 H 1.48502 * 109.46948 * 59.99666 * 8 6 4 10 10 H 1.48499 * 109.47536 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46902 * 299.99919 * 8 6 4 12 12 C 1.46500 * 120.00353 * 95.78150 * 3 2 1 13 13 H 1.08997 * 109.47456 * 179.19145 * 12 3 2 14 14 C 1.53009 * 109.46955 * 59.19289 * 12 3 2 15 15 C 1.53002 * 109.47098 * 299.19556 * 12 3 2 16 16 N 1.46501 * 109.47002 * 304.99462 * 15 12 3 17 17 C 1.34775 * 120.00092 * 179.97438 * 16 15 12 18 18 O 1.21623 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.47228 * 119.99986 * 180.02562 * 17 16 15 20 20 C 1.40298 * 120.64997 * 89.72325 * 19 17 16 21 21 O 1.35418 * 119.77963 * 0.02562 * 20 19 17 22 22 N 1.32186 * 120.44070 * 179.77756 * 20 19 17 23 23 C 1.32074 * 121.97890 * 0.48553 * 22 20 19 24 24 C 1.37903 * 121.29544 * 359.77816 * 23 22 20 25 25 C 1.39213 * 119.38828 * 359.97438 * 24 23 22 26 26 O 1.35497 * 120.90457 * 180.02562 * 25 24 23 27 27 C 1.42906 * 116.99937 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47334 * 300.00206 * 1 2 3 30 30 H 1.08999 * 109.46617 * 60.00639 * 1 2 3 31 31 H 1.08999 * 109.47681 * 239.99441 * 2 1 3 32 32 H 1.09006 * 109.46910 * 119.99616 * 2 1 3 33 33 H 0.97002 * 120.00146 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47002 * 60.00281 * 14 12 3 35 35 H 1.09001 * 109.46957 * 180.02562 * 14 12 3 36 36 H 1.08997 * 109.46921 * 300.00183 * 14 12 3 37 37 H 1.09003 * 109.47252 * 184.99717 * 15 12 3 38 38 H 1.09006 * 109.47107 * 64.99725 * 15 12 3 39 39 H 0.96998 * 119.99468 * 359.73148 * 16 15 12 40 40 H 0.96703 * 114.00123 * 90.00223 * 21 20 19 41 41 H 1.08006 * 119.35561 * 179.75132 * 23 22 20 42 42 H 1.07997 * 120.30892 * 179.97438 * 24 23 22 43 43 H 1.08994 * 109.46917 * 179.97438 * 27 26 25 44 44 H 1.08993 * 109.46863 * 300.00425 * 27 26 25 45 45 H 1.09007 * 109.46917 * 59.99780 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1338 2.0665 -1.1799 5 1 1.4316 1.8860 -1.9803 6 6 3.1537 2.9932 -1.3472 7 7 4.1914 2.9833 -0.5376 8 14 3.0533 4.2546 -2.7214 9 1 1.8374 5.0878 -2.5407 10 1 4.2576 5.1228 -2.6855 11 1 2.9849 3.5563 -4.0302 12 6 2.3830 2.0293 1.2622 13 1 2.7348 3.0414 1.0627 14 6 3.4940 1.2284 1.9444 15 6 1.1590 2.0862 2.1786 16 7 0.0557 2.7492 1.4790 17 6 -1.1316 2.9130 2.0955 18 8 -1.2868 2.5108 3.2328 19 6 -2.2405 3.5788 1.3923 20 6 -3.1451 2.8363 0.6184 21 8 -2.9990 1.4939 0.5161 22 7 -4.1418 3.4378 -0.0078 23 6 -4.3224 4.7444 0.0583 24 6 -3.4761 5.5484 0.7925 25 6 -2.4105 4.9720 1.4784 26 8 -1.5604 5.7328 2.2095 27 6 -1.8108 7.1394 2.2393 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.9042 3.6307 -0.6548 34 1 4.3659 1.1878 1.2916 35 1 3.7650 1.7103 2.8837 36 1 3.1421 0.2162 2.1440 37 1 1.4061 2.6462 3.0805 38 1 0.8609 1.0734 2.4499 39 1 0.1808 3.0734 0.5734 40 1 -3.4725 0.9939 1.1951 41 1 -5.1490 5.1922 -0.4736 42 1 -3.6384 6.6152 0.8351 43 1 -1.0594 7.6291 2.8586 44 1 -1.7634 7.5384 1.2261 45 1 -2.8011 7.3235 2.6562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156415614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:13 Heat of formation + Delta-G solvation = -74.865281 kcal Electronic energy + Delta-G solvation = -29291.975154 eV Core-core repulsion = 25310.501158 eV Total energy + Delta-G solvation = -3981.473996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11202 -40.34117 -39.81760 -38.53426 -37.79934 -35.23596 -33.74757 -33.18956 -32.41420 -31.53604 -29.91457 -28.49624 -27.33587 -25.78878 -25.13995 -23.89312 -23.31207 -21.67366 -21.02134 -20.24659 -19.06405 -18.60019 -18.54582 -18.04288 -17.36370 -16.85076 -16.65162 -16.37151 -16.23977 -15.85013 -15.61953 -15.28422 -15.24325 -14.68818 -14.29997 -14.15360 -13.99161 -13.79556 -13.54839 -13.48737 -13.16924 -12.89867 -12.78169 -12.74823 -12.57118 -12.51424 -12.47501 -12.39081 -12.09678 -11.87492 -11.35228 -11.32478 -11.17015 -10.55085 -10.43605 -10.13273 -10.03620 -9.95163 -8.51658 -7.82878 -5.32797 -0.28474 0.08723 1.47019 1.49000 1.51622 1.54592 1.89474 2.26545 2.44938 2.52903 2.77091 3.30540 3.52082 3.66027 3.76505 3.83463 3.93946 4.22364 4.27340 4.34075 4.38791 4.48895 4.50204 4.57303 4.68771 4.70366 4.81786 4.84402 4.89760 4.94175 4.99777 5.08775 5.23553 5.25291 5.36981 5.47376 5.65133 5.69160 5.76104 5.86259 6.05697 6.45377 6.49404 6.60257 6.80901 7.17859 7.24616 7.92739 8.44928 9.20667 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.005184 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.636352 B = 5399.908037 C = 5982.579524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.138 3.862 3 N -0.589 5.589 4 C -0.262 4.262 5 H 0.053 0.947 6 C -0.030 4.030 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.182 3.818 13 H 0.069 0.931 14 C -0.133 4.133 15 C 0.114 3.886 16 N -0.683 5.683 17 C 0.581 3.419 18 O -0.584 6.584 19 C -0.258 4.258 20 C 0.377 3.623 21 O -0.480 6.480 22 N -0.542 5.542 23 C 0.174 3.826 24 C -0.262 4.262 25 C 0.204 3.796 26 O -0.329 6.329 27 C 0.012 3.988 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.405 0.595 40 H 0.419 0.581 41 H 0.211 0.789 42 H 0.189 0.811 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.577 7.584 4.385 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 N -0.311 5.311 4 C -0.392 4.392 5 H 0.071 0.929 6 C -0.227 4.227 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.209 1.209 12 C 0.075 3.925 13 H 0.087 0.913 14 C -0.193 4.193 15 C -0.011 4.011 16 N -0.330 5.330 17 C 0.367 3.633 18 O -0.466 6.466 19 C -0.266 4.266 20 C 0.198 3.802 21 O -0.289 6.289 22 N -0.265 5.265 23 C 0.019 3.981 24 C -0.282 4.282 25 C 0.148 3.852 26 O -0.240 6.240 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.241 0.759 40 H 0.281 0.719 41 H 0.228 0.772 42 H 0.206 0.794 43 H 0.134 0.866 44 H 0.096 0.904 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.475 6.920 4.375 17.507 hybrid contribution 0.783 1.074 -0.329 1.370 sum -14.692 7.994 4.045 17.208 Atomic orbital electron populations 1.22159 0.97659 0.99937 1.00774 1.20868 0.93120 0.86145 0.98579 1.43938 1.76097 1.09168 1.01903 1.19140 1.07445 1.18588 0.94028 0.92888 1.25676 0.94470 1.02853 0.99740 1.70118 1.08039 1.36614 1.40868 0.85636 0.76541 0.79756 0.80189 1.20614 1.22133 1.20889 1.20357 0.89879 0.97987 0.84311 0.91265 1.21863 0.99431 0.98833 0.99127 1.21986 0.87845 0.96168 0.95124 1.45903 1.11064 1.57520 1.18551 1.17784 0.82441 0.78065 0.85029 1.90713 1.83545 1.52973 1.19369 1.20391 1.03761 0.93542 1.08884 1.18869 0.88032 0.85358 0.87939 1.84692 1.74014 1.12643 1.57594 1.67389 1.21391 1.14254 1.23463 1.23201 0.96957 0.86334 0.91625 1.22544 0.97143 1.04395 1.04145 1.19349 0.88882 0.88676 0.88244 1.86085 1.50332 1.22769 1.64789 1.23598 1.04859 0.75186 1.04446 0.92767 0.93281 0.95067 0.95233 0.93507 0.94145 0.93274 0.93036 0.93708 0.92803 0.92660 0.75900 0.71920 0.77203 0.79420 0.86574 0.90352 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 9.89 71.98 0.71 -4.80 16 2 C 0.14 5.77 5.69 86.38 0.49 6.26 16 3 N -0.59 -27.56 1.86 -678.02 -1.26 -28.82 16 4 C -0.26 -13.58 9.21 84.03 0.77 -12.80 16 5 H 0.05 2.81 7.89 -2.91 -0.02 2.79 16 6 C -0.03 -1.57 4.86 84.86 0.41 -1.15 16 7 N -0.91 -50.05 10.69 21.65 0.23 -49.81 16 8 Si 0.95 43.17 29.59 68.60 2.03 45.20 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.18 8.11 1.93 45.00 0.09 8.20 16 13 H 0.07 3.55 6.01 -2.39 -0.01 3.53 16 14 C -0.13 -5.54 9.05 71.99 0.65 -4.89 16 15 C 0.11 4.63 4.34 86.38 0.38 5.01 16 16 N -0.68 -27.42 4.07 -466.55 -1.90 -29.31 16 17 C 0.58 22.70 6.24 86.61 0.54 23.24 16 18 O -0.58 -25.68 17.11 -4.11 -0.07 -25.75 16 19 C -0.26 -8.58 5.67 -19.83 -0.11 -8.69 16 20 C 0.38 11.61 7.77 85.14 0.66 12.27 16 21 O -0.48 -14.29 13.01 -87.13 -1.13 -15.43 16 22 N -0.54 -14.42 10.37 -308.27 -3.20 -17.61 16 23 C 0.17 3.22 11.15 84.58 0.94 4.16 16 24 C -0.26 -4.78 9.09 22.42 0.20 -4.57 16 25 C 0.20 5.59 6.74 23.09 0.16 5.75 16 26 O -0.33 -8.99 10.03 -87.98 -0.88 -9.87 16 27 C 0.01 0.18 9.84 113.37 1.12 1.30 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.05 1.90 5.09 -2.39 -0.01 1.89 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 32 H 0.05 1.84 6.40 -2.38 -0.02 1.82 16 33 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.05 2.32 7.48 -2.39 -0.02 2.31 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.70 6.63 -2.39 -0.02 1.68 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.24 7.03 -2.38 -0.02 2.22 16 39 H 0.41 17.42 7.84 -92.71 -0.73 16.70 16 40 H 0.42 8.86 9.06 -74.06 -0.67 8.19 16 41 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.19 1.74 6.45 -2.91 -0.02 1.72 16 43 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 0.89 7.71 -2.39 -0.02 0.87 16 45 H 0.08 0.81 7.71 -2.38 -0.02 0.79 16 Total: -1.00 -70.49 369.95 0.47 -70.01 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -0.36 Total: 32.13 kcal Atomic # 6 Polarization: 22.26 SS G_CDS: 7.01 Total: 29.27 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -6.12 Total: -125.56 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.09 Total: -51.04 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -70.49 0.47 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156415614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.850 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds