Wall clock time and date at job start Tue Mar 31 2020 13:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47345 * 2 1 4 4 N 1.46895 * 109.47554 * 120.00340 * 2 1 3 5 5 C 1.46907 * 110.99846 * 306.06378 * 4 2 1 6 6 C 1.46897 * 110.99997 * 70.01401 * 4 2 1 7 7 H 1.08996 * 110.87873 * 296.60837 * 6 4 2 8 8 C 1.55142 * 110.99009 * 172.76427 * 6 4 2 9 9 C 1.54318 * 103.01803 * 206.21850 * 8 6 4 10 10 N 1.47434 * 107.23736 * 22.28567 * 9 8 6 11 11 C 1.38409 * 111.00354 * 123.25238 * 10 9 8 12 12 N 1.32744 * 119.44011 * 239.87678 * 11 10 9 13 13 C 1.31462 * 121.73974 * 180.02562 * 12 11 10 14 14 C 1.40790 * 120.39032 * 0.02562 * 13 12 11 15 15 C 1.41199 * 120.56610 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99827 * 335.34112 * 15 14 13 17 17 C 1.39875 * 119.99982 * 155.33934 * 15 14 13 18 18 N 1.30901 * 119.99934 * 344.31549 * 17 15 14 19 19 Si 1.86800 * 119.99961 * 164.31416 * 17 15 14 20 20 H 1.48502 * 109.47124 * 59.99683 * 19 17 15 21 21 H 1.48497 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46951 * 300.00072 * 19 17 15 23 23 C 1.41279 * 118.87056 * 0.23205 * 14 13 12 24 24 C 1.36666 * 118.39939 * 359.52255 * 23 14 13 25 25 Cl 1.73601 * 120.26573 * 180.19408 * 24 23 14 26 26 C 1.47854 * 108.56397 * 0.98947 * 10 9 8 27 27 H 1.09002 * 109.47065 * 65.50233 * 1 2 3 28 28 H 1.08998 * 109.47379 * 185.50793 * 1 2 3 29 29 H 1.09001 * 109.46510 * 305.50621 * 1 2 3 30 30 H 1.09002 * 109.46982 * 240.00544 * 2 1 3 31 31 H 1.08997 * 109.47031 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46715 * 300.00084 * 3 2 1 33 33 H 1.08997 * 109.46566 * 59.99874 * 3 2 1 34 34 H 1.08998 * 109.47295 * 189.08880 * 5 4 2 35 35 H 1.09004 * 109.46914 * 309.08744 * 5 4 2 36 36 H 1.09000 * 109.46926 * 69.08799 * 5 4 2 37 37 H 1.09004 * 110.70260 * 87.83722 * 8 6 4 38 38 H 1.08996 * 110.70987 * 324.60379 * 8 6 4 39 39 H 1.08998 * 109.88544 * 262.87451 * 9 8 6 40 40 H 1.09002 * 110.02160 * 141.76663 * 9 8 6 41 41 H 1.08003 * 119.80477 * 180.02562 * 13 12 11 42 42 H 0.97000 * 119.99688 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.80126 * 179.72802 * 23 14 13 44 44 H 1.08994 * 110.37096 * 94.73507 * 26 10 9 45 45 H 1.09005 * 110.37042 * 217.07699 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4341 -0.1152 2.4166 6 6 1.7533 -2.1350 1.1200 7 1 0.6815 -2.3311 1.0933 8 6 2.4274 -2.8901 2.2957 9 6 2.6397 -4.3071 1.7226 10 7 2.6407 -4.1884 0.2531 11 6 3.8123 -4.6924 -0.2845 12 7 4.5987 -3.8955 -0.9976 13 6 5.7211 -4.3268 -1.5293 14 6 6.1242 -5.6643 -1.3544 15 6 7.3286 -6.1316 -1.9242 16 1 7.7424 -5.6390 -2.7916 17 6 7.9858 -7.2326 -1.3652 18 7 7.6735 -7.6389 -0.1606 19 14 9.3090 -8.1231 -2.3376 20 1 10.4065 -7.1767 -2.6617 21 1 9.8462 -9.2466 -1.5286 22 1 8.7257 -8.6543 -3.5957 23 6 5.3003 -6.5325 -0.6037 24 6 4.1466 -6.0325 -0.0683 25 17 3.1008 -7.0551 0.8668 26 6 2.4634 -2.7647 -0.1043 27 1 -0.3633 0.4261 -0.9352 28 1 -0.3634 -1.0229 0.0986 29 1 -0.3632 0.5969 0.8366 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9306 -0.5333 3.2923 35 1 1.5666 0.9667 2.4057 36 1 0.3705 -0.3506 2.4550 37 1 1.7679 -2.9200 3.1631 38 1 3.3821 -2.4309 2.5519 39 1 1.8283 -4.9613 2.0413 40 1 3.5945 -4.7080 2.0629 41 1 6.3375 -3.6510 -2.1035 42 1 8.1291 -8.4026 0.2269 43 1 5.5772 -7.5656 -0.4538 44 1 3.4314 -2.2908 -0.2668 45 1 1.8402 -2.6715 -0.9938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157021835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:51 Heat of formation + Delta-G solvation = 38.705191 kcal Electronic energy + Delta-G solvation = -25695.751035 eV Core-core repulsion = 22159.910989 eV Total energy + Delta-G solvation = -3535.840046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.90465 -38.52911 -36.68881 -35.48452 -34.13762 -32.25411 -30.74205 -30.23753 -28.82303 -28.38723 -27.22684 -25.33938 -24.92760 -22.38540 -21.83042 -20.74908 -20.11937 -18.96790 -17.55350 -16.92719 -16.10227 -15.66346 -15.40489 -15.04633 -14.61744 -14.28450 -14.20651 -13.64793 -13.25752 -13.17119 -13.03635 -12.78102 -12.48759 -12.32010 -12.20023 -11.96194 -11.90019 -11.75069 -11.47457 -11.36168 -11.32998 -11.23243 -11.09664 -10.92027 -10.73725 -10.61612 -10.43192 -10.38459 -10.27498 -9.78315 -9.49228 -8.73647 -8.25514 -8.20245 -8.15292 -7.18194 -6.92745 -4.53814 2.37556 2.72147 2.97560 2.99115 3.05964 3.24501 3.77773 3.84205 4.34518 4.69523 4.76984 4.88093 5.02464 5.06601 5.27870 5.30068 5.37881 5.44225 5.47461 5.52574 5.59711 5.69601 5.74864 5.79535 5.86426 5.94117 5.99641 6.06117 6.14686 6.17377 6.23916 6.33901 6.43568 6.51849 6.55694 6.62275 6.84940 6.96046 7.05594 7.15215 7.22844 7.36874 7.57355 7.78142 8.04872 8.27449 8.54114 8.54820 9.36677 9.95743 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.003385 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.033810 B = 8269.214879 C = 9191.893361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 C -0.142 4.142 4 N -0.524 5.524 5 C 0.022 3.978 6 C 0.071 3.929 7 H 0.053 0.947 8 C -0.130 4.130 9 C 0.052 3.948 10 N -0.455 5.455 11 C 0.167 3.833 12 N -0.475 5.475 13 C -0.003 4.003 14 C 0.061 3.939 15 C -0.443 4.443 16 H 0.086 0.914 17 C 0.072 3.928 18 N -0.787 5.787 19 Si 0.916 3.084 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.115 4.115 24 C -0.046 4.046 25 Cl -0.104 7.104 26 C 0.060 3.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.134 0.866 42 H 0.286 0.714 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 9.009 3.403 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.037 4.037 3 C -0.199 4.199 4 N -0.248 5.248 5 C -0.127 4.127 6 C -0.038 4.038 7 H 0.070 0.930 8 C -0.169 4.169 9 C -0.076 4.076 10 N -0.174 5.174 11 C -0.064 4.064 12 N -0.186 5.186 13 C -0.165 4.165 14 C 0.056 3.944 15 C -0.472 4.472 16 H 0.104 0.896 17 C -0.147 4.147 18 N -0.411 5.411 19 Si 0.740 3.260 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.141 4.141 24 C -0.077 4.077 25 Cl -0.076 7.076 26 C -0.067 4.067 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.151 0.849 42 H 0.097 0.903 43 H 0.157 0.843 44 H 0.108 0.892 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.046 9.370 3.396 13.460 hybrid contribution 0.480 -1.205 0.149 1.306 sum -8.566 8.165 3.545 12.354 Atomic orbital electron populations 1.22462 0.97845 1.01984 1.02014 1.21750 0.92448 0.95462 0.93998 1.21838 1.02063 0.94897 1.01145 1.62222 1.58193 1.02358 1.01989 1.22404 0.97098 1.00117 0.93051 1.22816 0.97626 0.86708 0.96676 0.92962 1.22822 1.01137 0.95818 0.97139 1.22904 1.01951 0.95768 0.86943 1.60872 1.30850 1.17247 1.08477 1.18753 0.92936 0.89438 1.05291 1.66970 1.05083 1.36353 1.10220 1.22430 0.94501 0.93896 1.05696 1.18407 0.93285 0.91104 0.91579 1.19470 1.04865 1.10914 1.11980 0.89569 1.25999 0.98108 0.96282 0.94314 1.69784 1.36984 1.21869 1.12511 0.86226 0.80264 0.79140 0.80412 1.18743 1.20158 1.18607 1.21345 0.91146 1.01245 1.00382 1.20978 0.94459 0.90459 1.01805 1.98252 1.67793 1.68739 1.72807 1.22860 1.01469 0.86980 0.95430 0.92251 0.92477 0.92648 0.89400 0.91741 0.92497 0.92897 0.91592 0.91429 0.95659 0.91581 0.90588 0.90726 0.92081 0.84871 0.90254 0.84259 0.89202 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.37 37.16 0.31 -1.55 16 2 C 0.07 0.83 2.79 -67.71 -0.19 0.64 16 3 C -0.14 -1.41 9.14 37.16 0.34 -1.07 16 4 N -0.52 -6.72 4.61 -224.35 -1.03 -7.75 16 5 C 0.02 0.23 8.32 60.07 0.50 0.73 16 6 C 0.07 1.01 2.38 -65.58 -0.16 0.86 16 7 H 0.05 0.74 6.75 -51.93 -0.35 0.39 16 8 C -0.13 -1.91 5.50 -24.91 -0.14 -2.05 16 9 C 0.05 0.90 5.04 -2.84 -0.01 0.89 16 10 N -0.45 -8.93 4.93 -169.88 -0.84 -9.77 16 11 C 0.17 3.80 6.16 -155.05 -0.95 2.84 16 12 N -0.47 -11.12 8.10 -11.75 -0.10 -11.22 16 13 C 0.00 -0.08 10.97 -16.75 -0.18 -0.26 16 14 C 0.06 1.55 5.58 -106.65 -0.60 0.95 16 15 C -0.44 -10.86 9.07 -37.85 -0.34 -11.20 16 16 H 0.09 1.99 7.89 -52.49 -0.41 1.57 16 17 C 0.07 1.69 5.20 -17.34 -0.09 1.60 16 18 N -0.79 -19.13 10.89 55.54 0.60 -18.53 16 19 Si 0.92 17.50 29.59 -169.99 -5.03 12.47 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 C -0.11 -2.87 8.51 -38.99 -0.33 -3.20 16 24 C -0.05 -1.08 5.81 -39.57 -0.23 -1.31 16 25 Cl -0.10 -2.11 26.18 -51.86 -1.36 -3.47 16 26 C 0.06 1.06 4.73 -2.29 -0.01 1.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 29 H 0.05 0.52 6.87 -51.93 -0.36 0.16 16 30 H 0.09 1.14 6.64 -51.93 -0.34 0.79 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.48 6.38 -51.93 -0.33 0.15 16 34 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 35 H 0.07 0.64 6.11 -51.93 -0.32 0.32 16 36 H 0.02 0.25 6.90 -51.93 -0.36 -0.10 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.23 7.77 -51.93 -0.40 0.83 16 40 H 0.06 1.19 6.83 -51.93 -0.35 0.83 16 41 H 0.13 2.91 8.06 -52.48 -0.42 2.49 16 42 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 43 H 0.14 3.59 6.21 -52.49 -0.33 3.26 16 44 H 0.09 1.78 6.53 -51.93 -0.34 1.44 16 45 H 0.07 1.16 7.78 -51.93 -0.40 0.75 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -25.59 356.94 -11.16 -36.75 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.70 Total: 7.23 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.09 Total: -11.10 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.36 Total: -47.26 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -1.36 Total: -3.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -25.59 -11.16 -36.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157021835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.450 kcal (2) G-P(sol) polarization free energy of solvation -25.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds