Wall clock time and date at job start Tue Mar 31 2020 13:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47345 * 2 1 4 4 N 1.46895 * 109.47554 * 120.00340 * 2 1 3 5 5 C 1.46907 * 110.99846 * 306.06378 * 4 2 1 6 6 C 1.46897 * 110.99997 * 70.01401 * 4 2 1 7 7 H 1.08996 * 110.87873 * 296.60837 * 6 4 2 8 8 C 1.55142 * 110.99009 * 172.76427 * 6 4 2 9 9 C 1.54318 * 103.01803 * 206.21850 * 8 6 4 10 10 N 1.47434 * 107.23736 * 22.28567 * 9 8 6 11 11 C 1.38409 * 111.00354 * 123.25238 * 10 9 8 12 12 N 1.32744 * 119.44011 * 239.87678 * 11 10 9 13 13 C 1.31462 * 121.73974 * 180.02562 * 12 11 10 14 14 C 1.40790 * 120.39032 * 0.02562 * 13 12 11 15 15 C 1.41199 * 120.56610 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99827 * 335.34112 * 15 14 13 17 17 C 1.39875 * 119.99982 * 155.33934 * 15 14 13 18 18 N 1.30901 * 119.99934 * 344.31549 * 17 15 14 19 19 Si 1.86800 * 119.99961 * 164.31416 * 17 15 14 20 20 H 1.48502 * 109.47124 * 59.99683 * 19 17 15 21 21 H 1.48497 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46951 * 300.00072 * 19 17 15 23 23 C 1.41279 * 118.87056 * 0.23205 * 14 13 12 24 24 C 1.36666 * 118.39939 * 359.52255 * 23 14 13 25 25 Cl 1.73601 * 120.26573 * 180.19408 * 24 23 14 26 26 C 1.47854 * 108.56397 * 0.98947 * 10 9 8 27 27 H 1.09002 * 109.47065 * 65.50233 * 1 2 3 28 28 H 1.08998 * 109.47379 * 185.50793 * 1 2 3 29 29 H 1.09001 * 109.46510 * 305.50621 * 1 2 3 30 30 H 1.09002 * 109.46982 * 240.00544 * 2 1 3 31 31 H 1.08997 * 109.47031 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46715 * 300.00084 * 3 2 1 33 33 H 1.08997 * 109.46566 * 59.99874 * 3 2 1 34 34 H 1.08998 * 109.47295 * 189.08880 * 5 4 2 35 35 H 1.09004 * 109.46914 * 309.08744 * 5 4 2 36 36 H 1.09000 * 109.46926 * 69.08799 * 5 4 2 37 37 H 1.09004 * 110.70260 * 87.83722 * 8 6 4 38 38 H 1.08996 * 110.70987 * 324.60379 * 8 6 4 39 39 H 1.08998 * 109.88544 * 262.87451 * 9 8 6 40 40 H 1.09002 * 110.02160 * 141.76663 * 9 8 6 41 41 H 1.08003 * 119.80477 * 180.02562 * 13 12 11 42 42 H 0.97000 * 119.99688 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.80126 * 179.72802 * 23 14 13 44 44 H 1.08994 * 110.37096 * 94.73507 * 26 10 9 45 45 H 1.09005 * 110.37042 * 217.07699 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4341 -0.1152 2.4166 6 6 1.7533 -2.1350 1.1200 7 1 0.6815 -2.3311 1.0933 8 6 2.4274 -2.8901 2.2957 9 6 2.6397 -4.3071 1.7226 10 7 2.6407 -4.1884 0.2531 11 6 3.8123 -4.6924 -0.2845 12 7 4.5987 -3.8955 -0.9976 13 6 5.7211 -4.3268 -1.5293 14 6 6.1242 -5.6643 -1.3544 15 6 7.3286 -6.1316 -1.9242 16 1 7.7424 -5.6390 -2.7916 17 6 7.9858 -7.2326 -1.3652 18 7 7.6735 -7.6389 -0.1606 19 14 9.3090 -8.1231 -2.3376 20 1 10.4065 -7.1767 -2.6617 21 1 9.8462 -9.2466 -1.5286 22 1 8.7257 -8.6543 -3.5957 23 6 5.3003 -6.5325 -0.6037 24 6 4.1466 -6.0325 -0.0683 25 17 3.1008 -7.0551 0.8668 26 6 2.4634 -2.7647 -0.1043 27 1 -0.3633 0.4261 -0.9352 28 1 -0.3634 -1.0229 0.0986 29 1 -0.3632 0.5969 0.8366 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9306 -0.5333 3.2923 35 1 1.5666 0.9667 2.4057 36 1 0.3705 -0.3506 2.4550 37 1 1.7679 -2.9200 3.1631 38 1 3.3821 -2.4309 2.5519 39 1 1.8283 -4.9613 2.0413 40 1 3.5945 -4.7080 2.0629 41 1 6.3375 -3.6510 -2.1035 42 1 8.1291 -8.4026 0.2269 43 1 5.5772 -7.5656 -0.4538 44 1 3.4314 -2.2908 -0.2668 45 1 1.8402 -2.6715 -0.9938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157021835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:51 Heat of formation + Delta-G solvation = 25.324540 kcal Electronic energy + Delta-G solvation = -25696.331264 eV Core-core repulsion = 22159.910989 eV Total energy + Delta-G solvation = -3536.420274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.39851 -39.91736 -38.07067 -37.22497 -35.87692 -33.51278 -32.52937 -31.63807 -30.27409 -29.76163 -28.04299 -26.84274 -26.20254 -23.99754 -23.53721 -22.08595 -21.58865 -20.03431 -19.37624 -18.35554 -17.40505 -17.31599 -16.85602 -16.55778 -15.99211 -15.66215 -15.36494 -14.90991 -14.72276 -14.56742 -14.25638 -13.95060 -13.94051 -13.83346 -13.58077 -13.29577 -13.18979 -12.98634 -12.89211 -12.76662 -12.68293 -12.49255 -12.34661 -12.25163 -12.10316 -11.97887 -11.77342 -11.66796 -11.44975 -11.38949 -11.21945 -10.46637 -10.03630 -9.98304 -9.17912 -8.94115 -8.69040 -6.40170 0.55228 0.86412 1.40671 1.44137 1.50587 1.53751 2.17889 2.56028 2.76597 3.23223 3.51797 3.59579 3.72010 4.00075 4.13304 4.17921 4.21718 4.33004 4.41906 4.46895 4.52501 4.56867 4.67416 4.72288 4.77705 4.80546 4.86248 4.91623 4.98910 4.99976 5.02539 5.04592 5.08382 5.11794 5.17921 5.21488 5.28977 5.33832 5.45773 5.66231 5.73331 6.01095 6.21018 6.22769 6.27085 6.47943 6.71119 6.71580 7.51877 8.21476 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.003385 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.033810 B = 8269.214879 C = 9191.893361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 C -0.136 4.136 4 N -0.538 5.538 5 C 0.022 3.978 6 C 0.086 3.914 7 H 0.062 0.938 8 C -0.120 4.120 9 C 0.053 3.947 10 N -0.461 5.461 11 C 0.168 3.832 12 N -0.481 5.481 13 C -0.015 4.015 14 C 0.037 3.963 15 C -0.470 4.470 16 H 0.093 0.907 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.988 3.012 20 H -0.256 1.256 21 H -0.269 1.269 22 H -0.259 1.259 23 C -0.131 4.131 24 C -0.058 4.058 25 Cl -0.079 7.079 26 C 0.064 3.936 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.147 0.853 42 H 0.293 0.707 43 H 0.127 0.873 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 9.835 3.973 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.039 4.039 3 C -0.194 4.194 4 N -0.263 5.263 5 C -0.126 4.126 6 C -0.023 4.023 7 H 0.080 0.920 8 C -0.159 4.159 9 C -0.074 4.074 10 N -0.181 5.181 11 C -0.064 4.064 12 N -0.193 5.193 13 C -0.176 4.176 14 C 0.032 3.968 15 C -0.499 4.499 16 H 0.111 0.889 17 C -0.182 4.182 18 N -0.442 5.442 19 Si 0.809 3.191 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.158 4.158 24 C -0.088 4.088 25 Cl -0.050 7.050 26 C -0.064 4.064 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.055 0.945 41 H 0.164 0.836 42 H 0.104 0.896 43 H 0.145 0.855 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.029 10.220 3.978 14.861 hybrid contribution 0.670 -1.424 0.030 1.574 sum -9.360 8.796 4.008 13.455 Atomic orbital electron populations 1.22381 0.96390 1.01685 1.03091 1.21772 0.93594 0.95912 0.92673 1.21794 1.01108 0.94037 1.02446 1.62197 1.59227 1.01455 1.03394 1.22456 0.97518 1.00789 0.91795 1.22610 0.97472 0.87794 0.94431 0.91983 1.22757 1.01321 0.93640 0.98177 1.22915 1.01097 0.97904 0.85509 1.60842 1.28925 1.18515 1.09830 1.19084 0.93341 0.89414 1.04553 1.67062 1.05155 1.36500 1.10568 1.22674 0.95020 0.93900 1.06041 1.18700 0.94047 0.91745 0.92293 1.19769 1.05230 1.12305 1.12641 0.88907 1.26855 1.00076 0.96347 0.94916 1.69838 1.38174 1.22396 1.13840 0.85135 0.77346 0.77926 0.78734 1.17979 1.19380 1.18357 1.21300 0.92101 1.00788 1.01603 1.21093 0.94602 0.91269 1.01879 1.98241 1.66782 1.67969 1.72035 1.22801 1.00560 0.85842 0.97153 0.91319 0.93438 0.91393 0.91570 0.93187 0.91184 0.91602 0.91504 0.90124 0.94644 0.88487 0.91793 0.89453 0.94484 0.83599 0.89580 0.85534 0.91697 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.37 71.98 0.60 -2.54 16 2 C 0.07 1.49 2.79 44.92 0.13 1.61 16 3 C -0.14 -2.47 9.14 71.99 0.66 -1.82 16 4 N -0.54 -12.93 4.61 -863.70 -3.98 -16.91 16 5 C 0.02 0.40 8.32 127.69 1.06 1.47 16 6 C 0.09 2.34 2.38 46.30 0.11 2.45 16 7 H 0.06 1.60 6.75 -2.39 -0.02 1.58 16 8 C -0.12 -3.33 5.50 31.78 0.17 -3.15 16 9 C 0.05 1.80 5.04 86.65 0.44 2.24 16 10 N -0.46 -18.09 4.93 -691.37 -3.41 -21.50 16 11 C 0.17 7.78 6.16 133.32 0.82 8.60 16 12 N -0.48 -23.15 8.10 -191.09 -1.55 -24.69 16 13 C -0.02 -0.74 10.97 85.37 0.94 0.19 16 14 C 0.04 1.94 5.58 -21.18 -0.12 1.82 16 15 C -0.47 -23.60 9.07 23.39 0.21 -23.39 16 16 H 0.09 4.36 7.89 -2.91 -0.02 4.34 16 17 C 0.03 1.63 5.20 85.23 0.44 2.07 16 18 N -0.82 -40.48 10.89 21.82 0.24 -40.24 16 19 Si 0.99 35.67 29.59 68.60 2.03 37.70 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 22 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 23 C -0.13 -6.78 8.51 22.65 0.19 -6.59 16 24 C -0.06 -2.74 5.81 22.28 0.13 -2.62 16 25 Cl -0.08 -3.18 26.18 -2.72 -0.07 -3.25 16 26 C 0.06 2.24 4.73 86.77 0.41 2.65 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 0.94 6.58 -2.39 -0.02 0.92 16 29 H 0.07 1.04 6.87 -2.39 -0.02 1.03 16 30 H 0.07 1.71 6.64 -2.39 -0.02 1.69 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.02 6.38 -2.39 -0.02 1.00 16 34 H 0.07 1.22 7.45 -2.39 -0.02 1.21 16 35 H 0.08 1.28 6.11 -2.39 -0.01 1.26 16 36 H 0.04 0.59 6.90 -2.39 -0.02 0.57 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 2.74 7.77 -2.39 -0.02 2.72 16 40 H 0.04 1.44 6.83 -2.39 -0.02 1.42 16 41 H 0.15 6.58 8.06 -2.91 -0.02 6.55 16 42 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 43 H 0.13 6.77 6.21 -2.91 -0.02 6.75 16 44 H 0.06 2.63 6.53 -2.39 -0.02 2.61 16 45 H 0.06 2.26 7.78 -2.38 -0.02 2.24 16 Total: -1.00 -56.14 356.94 0.44 -55.69 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.99 Total: 30.21 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 6.20 Total: -17.00 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -8.70 Total: -103.35 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.07 Total: -3.25 kcal Total: -56.14 0.44 -55.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157021835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.016 kcal (2) G-P(sol) polarization free energy of solvation -56.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds