Wall clock time and date at job start Tue Mar 31 2020 13:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47275 * 2 1 4 4 N 1.46899 * 109.47431 * 119.99670 * 2 1 3 5 5 C 1.46905 * 111.00150 * 305.32422 * 4 2 1 6 6 C 1.46900 * 110.99952 * 69.27126 * 4 2 1 7 7 H 1.08997 * 110.88087 * 298.52886 * 6 4 2 8 8 C 1.55149 * 111.02048 * 62.39202 * 6 4 2 9 9 C 1.54318 * 103.01855 * 153.76037 * 8 6 4 10 10 N 1.47441 * 107.23270 * 337.71591 * 9 8 6 11 11 C 1.38415 * 110.99603 * 236.74379 * 10 9 8 12 12 N 1.32744 * 119.43490 * 239.60197 * 11 10 9 13 13 C 1.31466 * 121.74118 * 179.71297 * 12 11 10 14 14 C 1.40796 * 120.39018 * 0.55910 * 13 12 11 15 15 C 1.41192 * 120.57095 * 179.75022 * 14 13 12 16 16 H 1.08004 * 119.99961 * 28.86207 * 15 14 13 17 17 C 1.39864 * 119.99952 * 208.86824 * 15 14 13 18 18 N 1.30898 * 120.00343 * 11.50289 * 17 15 14 19 19 Si 1.86806 * 119.99729 * 191.50343 * 17 15 14 20 20 H 1.48500 * 109.46979 * 60.00080 * 19 17 15 21 21 H 1.48503 * 109.46733 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46871 * 299.99759 * 19 17 15 23 23 C 1.41289 * 118.86548 * 359.73090 * 14 13 12 24 24 C 1.36669 * 118.40178 * 359.97438 * 23 14 13 25 25 Cl 1.73602 * 120.26367 * 180.02562 * 24 23 14 26 26 C 1.47841 * 108.57044 * 359.00881 * 10 9 8 27 27 H 1.09008 * 109.46877 * 299.99995 * 1 2 3 28 28 H 1.08995 * 109.46829 * 59.99968 * 1 2 3 29 29 H 1.08996 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46939 * 239.99632 * 2 1 3 31 31 H 1.08993 * 109.47171 * 63.24064 * 3 2 1 32 32 H 1.08996 * 109.47019 * 183.24434 * 3 2 1 33 33 H 1.08999 * 109.46730 * 303.24162 * 3 2 1 34 34 H 1.08994 * 109.47160 * 183.95037 * 5 4 2 35 35 H 1.09001 * 109.46683 * 303.95312 * 5 4 2 36 36 H 1.09003 * 109.46963 * 63.94599 * 5 4 2 37 37 H 1.09003 * 110.70694 * 35.37564 * 8 6 4 38 38 H 1.09002 * 110.70198 * 272.14130 * 8 6 4 39 39 H 1.09001 * 109.88324 * 218.30847 * 9 8 6 40 40 H 1.09000 * 109.88878 * 97.12266 * 9 8 6 41 41 H 1.07996 * 119.80803 * 180.26943 * 13 12 11 42 42 H 0.96998 * 120.00460 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.80068 * 180.02562 * 23 14 13 44 44 H 1.09001 * 110.37305 * 142.92447 * 26 10 9 45 45 H 1.08994 * 110.37691 * 265.15675 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4477 -0.1037 2.4177 6 6 1.7376 -2.1323 1.1282 7 1 0.6645 -2.3157 1.0748 8 6 2.4732 -2.7848 -0.0720 9 6 2.6402 -4.2513 0.3784 10 7 2.5562 -4.2685 1.8503 11 6 3.6903 -4.8358 2.4052 12 7 3.5732 -5.9165 3.1670 13 6 4.6203 -6.4953 3.7120 14 6 5.9107 -5.9702 3.5087 15 6 7.0373 -6.5856 4.0964 16 1 7.0307 -7.6474 4.2945 17 6 8.1618 -5.8204 4.4222 18 7 8.0942 -4.5135 4.3956 19 14 9.7601 -6.6636 4.8954 20 1 10.2208 -7.5177 3.7714 21 1 10.7920 -5.6377 5.1921 22 1 9.5383 -7.5056 6.0984 23 6 6.0591 -4.8169 2.7060 24 6 4.9389 -4.2577 2.1581 25 17 5.0655 -2.8405 1.1634 26 6 2.3698 -2.8817 2.3275 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7250 1.9393 0.9175 32 1 3.1285 1.4430 -0.0582 33 1 1.6300 1.9728 -0.8595 34 1 1.8800 -0.5883 3.2930 35 1 1.6711 0.9628 2.4453 36 1 0.3673 -0.2486 2.4185 37 1 3.4450 -2.3168 -0.2291 38 1 1.8653 -2.7257 -0.9748 39 1 3.6111 -4.6292 0.0578 40 1 1.8435 -4.8625 -0.0457 41 1 4.4894 -7.3761 4.3231 42 1 8.8742 -3.9828 4.6213 43 1 7.0344 -4.3881 2.5290 44 1 1.6965 -2.8626 3.1845 45 1 3.3302 -2.4386 2.5905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157021836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:55 Heat of formation + Delta-G solvation = 46.311134 kcal Electronic energy + Delta-G solvation = -26045.788302 eV Core-core repulsion = 22510.278075 eV Total energy + Delta-G solvation = -3535.510227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.93098 -38.52931 -36.77811 -35.53982 -34.16604 -32.07623 -30.81975 -30.56212 -28.78056 -27.77966 -27.26127 -25.94021 -24.70015 -21.97293 -21.92847 -21.12901 -20.08860 -19.05557 -17.61290 -16.90888 -16.19689 -15.82103 -15.17544 -14.90791 -14.74113 -14.36806 -14.14032 -13.76890 -13.54001 -13.21318 -13.11040 -12.98474 -12.46320 -12.14292 -11.98232 -11.93585 -11.88103 -11.72841 -11.60368 -11.33383 -11.27752 -11.21836 -11.17949 -10.92272 -10.72403 -10.61872 -10.50943 -10.43012 -10.26793 -9.58668 -9.46742 -8.65947 -8.23301 -8.17473 -7.62416 -7.50321 -6.96066 -4.67174 2.27447 2.72356 2.94988 2.96999 3.02262 3.09316 3.74417 3.85559 4.36556 4.56741 4.76092 4.92240 5.00221 5.09534 5.23010 5.32809 5.35168 5.41225 5.51120 5.54738 5.65717 5.66929 5.76041 5.83177 5.88213 6.02094 6.04830 6.13225 6.15974 6.16051 6.20637 6.34383 6.38444 6.45231 6.53474 6.62597 6.83064 6.92442 7.04829 7.17818 7.22922 7.51184 7.53524 7.66419 8.06854 8.22238 8.47719 8.49446 9.48373 9.92040 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.003519 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.721488 B = 7954.863828 C = 8488.826589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 C -0.143 4.143 4 N -0.522 5.522 5 C 0.018 3.982 6 C 0.078 3.922 7 H 0.053 0.947 8 C -0.133 4.133 9 C 0.056 3.944 10 N -0.466 5.466 11 C 0.155 3.845 12 N -0.428 5.428 13 C -0.012 4.012 14 C 0.072 3.928 15 C -0.441 4.441 16 H 0.088 0.912 17 C 0.071 3.929 18 N -0.787 5.787 19 Si 0.919 3.081 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.119 4.119 24 C -0.073 4.073 25 Cl -0.092 7.092 26 C 0.056 3.944 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.287 0.713 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 8.393 -6.682 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.034 4.034 3 C -0.200 4.200 4 N -0.245 5.245 5 C -0.130 4.130 6 C -0.030 4.030 7 H 0.071 0.929 8 C -0.171 4.171 9 C -0.072 4.072 10 N -0.187 5.187 11 C -0.075 4.075 12 N -0.137 5.137 13 C -0.176 4.176 14 C 0.067 3.933 15 C -0.470 4.470 16 H 0.106 0.894 17 C -0.149 4.149 18 N -0.411 5.411 19 Si 0.742 3.258 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.146 4.146 24 C -0.105 4.105 25 Cl -0.064 7.064 26 C -0.072 4.072 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.154 0.846 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.927 8.151 -6.392 13.044 hybrid contribution 1.433 0.575 -0.140 1.551 sum -6.494 8.726 -6.533 12.688 Atomic orbital electron populations 1.22473 0.97903 1.02033 1.02086 1.21702 0.92437 0.95339 0.93945 1.21839 1.01841 0.95004 1.01348 1.62215 1.58323 1.02159 1.01845 1.22451 0.97247 1.00206 0.93062 1.22686 0.97395 0.86627 0.96329 0.92885 1.23019 1.01414 0.95948 0.96730 1.22748 1.01282 0.95528 0.87595 1.59724 1.36862 1.17220 1.04896 1.18522 0.85706 0.97254 1.06054 1.66786 1.34297 1.06731 1.05839 1.22568 0.87373 1.02928 1.04681 1.18532 0.93620 0.91341 0.89766 1.19534 0.97230 0.96508 1.33742 0.89378 1.26028 1.00837 0.94738 0.93260 1.69770 1.31660 1.05880 1.33760 0.86176 0.79681 0.79795 0.80109 1.18586 1.20098 1.18655 1.21360 0.97142 0.98600 0.97471 1.22338 0.97176 0.91233 0.99745 1.98271 1.98098 1.40850 1.69144 1.23131 1.01130 0.86868 0.96056 0.92305 0.92401 0.92511 0.90003 0.92586 0.91963 0.92644 0.91185 0.91416 0.95447 0.89622 0.92065 0.92276 0.91348 0.84558 0.90157 0.84630 0.91594 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 8.46 37.16 0.31 -1.48 16 2 C 0.07 0.81 2.80 -67.71 -0.19 0.62 16 3 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 4 N -0.52 -6.82 4.62 -224.34 -1.04 -7.85 16 5 C 0.02 0.22 8.49 60.07 0.51 0.73 16 6 C 0.08 1.14 2.41 -65.57 -0.16 0.99 16 7 H 0.05 0.76 6.75 -51.93 -0.35 0.41 16 8 C -0.13 -1.96 4.69 -24.90 -0.12 -2.07 16 9 C 0.06 0.98 5.95 -2.84 -0.02 0.97 16 10 N -0.47 -9.39 5.23 -169.88 -0.89 -10.28 16 11 C 0.16 3.60 5.62 -155.05 -0.87 2.72 16 12 N -0.43 -10.53 10.38 -11.75 -0.12 -10.65 16 13 C -0.01 -0.29 10.97 -16.74 -0.18 -0.47 16 14 C 0.07 1.82 5.55 -106.65 -0.59 1.23 16 15 C -0.44 -10.74 9.07 -37.85 -0.34 -11.08 16 16 H 0.09 2.01 7.87 -52.48 -0.41 1.59 16 17 C 0.07 1.65 5.26 -17.34 -0.09 1.56 16 18 N -0.79 -19.08 10.92 55.54 0.61 -18.48 16 19 Si 0.92 17.35 29.57 -169.99 -5.03 12.32 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 C -0.12 -2.97 8.48 -38.99 -0.33 -3.30 16 24 C -0.07 -1.69 5.30 -39.57 -0.21 -1.90 16 25 Cl -0.09 -1.81 21.02 -51.86 -1.09 -2.90 16 26 C 0.06 1.00 4.45 -2.30 -0.01 0.99 16 27 H 0.06 0.56 6.42 -51.92 -0.33 0.22 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 30 H 0.08 0.93 6.79 -51.93 -0.35 0.58 16 31 H 0.06 0.52 6.31 -51.93 -0.33 0.20 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.91 7.12 -51.93 -0.37 0.54 16 35 H 0.07 0.72 6.21 -51.93 -0.32 0.39 16 36 H 0.03 0.30 6.46 -51.93 -0.34 -0.03 16 37 H 0.09 1.35 5.55 -51.93 -0.29 1.06 16 38 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 39 H 0.06 1.12 6.40 -51.93 -0.33 0.79 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 42 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 43 H 0.14 3.48 6.35 -52.49 -0.33 3.15 16 44 H 0.07 1.19 8.01 -51.93 -0.42 0.77 16 45 H 0.07 1.45 5.39 -51.93 -0.28 1.17 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -26.05 348.92 -10.71 -36.76 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.46 Total: 7.37 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.95 Total: -11.54 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -1.44 Total: -47.27 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -1.09 Total: -2.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.05 -10.71 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157021836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.066 kcal (2) G-P(sol) polarization free energy of solvation -26.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds