Wall clock time and date at job start Tue Mar 31 2020 14:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 N 1.46899 * 109.47099 * 119.99551 * 2 1 3 5 5 C 1.46963 * 111.00306 * 306.55937 * 4 2 1 6 6 C 1.53050 * 109.36697 * 183.19019 * 5 4 2 7 7 N 1.46962 * 109.36153 * 301.59263 * 6 5 4 8 8 C 1.38405 * 111.00058 * 183.18655 * 7 6 5 9 9 N 1.32742 * 119.44115 * 296.60466 * 8 7 6 10 10 C 1.31469 * 121.74536 * 179.97438 * 9 8 7 11 11 C 1.40796 * 120.38480 * 359.97438 * 10 9 8 12 12 C 1.41197 * 120.56423 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00097 * 153.52595 * 12 11 10 14 14 C 1.39869 * 119.99686 * 333.52301 * 12 11 10 15 15 N 1.30901 * 120.00293 * 333.96716 * 14 12 11 16 16 Si 1.86797 * 119.99571 * 153.68482 * 14 12 11 17 17 H 1.48502 * 109.47237 * 180.27823 * 16 14 12 18 18 H 1.48505 * 109.47642 * 300.27810 * 16 14 12 19 19 H 1.48505 * 109.47210 * 60.28061 * 16 14 12 20 20 C 1.41283 * 118.86948 * 0.25634 * 11 10 9 21 21 C 1.36667 * 118.40310 * 359.49368 * 20 11 10 22 22 Cl 1.73595 * 120.26707 * 180.22465 * 21 20 11 23 23 C 1.46963 * 110.87564 * 59.32241 * 7 6 5 24 24 C 1.46965 * 111.00156 * 70.35591 * 4 2 1 25 25 H 1.08996 * 109.48586 * 296.78010 * 24 4 2 26 26 C 1.52995 * 109.48746 * 56.81878 * 24 4 2 27 27 H 1.08997 * 109.47293 * 300.00389 * 1 2 3 28 28 H 1.08993 * 109.47211 * 60.00429 * 1 2 3 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 239.99611 * 2 1 3 31 31 H 1.08996 * 109.46878 * 295.55338 * 3 2 1 32 32 H 1.08997 * 109.47133 * 55.54840 * 3 2 1 33 33 H 1.09000 * 109.47277 * 175.55002 * 3 2 1 34 34 H 1.08994 * 109.48738 * 63.21903 * 5 4 2 35 35 H 1.09002 * 109.48127 * 303.15460 * 5 4 2 36 36 H 1.08996 * 109.48617 * 181.62810 * 6 5 4 37 37 H 1.09000 * 109.50872 * 61.57041 * 6 5 4 38 38 H 1.07997 * 119.81129 * 180.02562 * 10 9 8 39 39 H 0.96995 * 119.99749 * 352.65543 * 15 14 12 40 40 H 1.07999 * 120.79390 * 179.73081 * 20 11 10 41 41 H 1.09001 * 109.48661 * 60.64964 * 23 7 6 42 42 H 1.09002 * 109.48127 * 180.70996 * 23 7 6 43 43 H 1.09005 * 109.46823 * 52.90528 * 26 24 4 44 44 H 1.08995 * 109.47111 * 172.90442 * 26 24 4 45 45 H 1.09000 * 109.47557 * 292.90650 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4247 -0.1224 2.4164 6 6 2.0189 -0.8159 3.6446 7 7 1.7596 -2.2601 3.5618 8 6 2.2210 -2.9125 4.6919 9 7 3.5203 -2.9075 4.9634 10 6 4.0076 -3.5121 6.0242 11 6 3.1521 -4.1899 6.9135 12 6 3.6714 -4.8409 8.0538 13 1 3.0501 -4.9799 8.9261 14 6 4.9906 -5.3057 8.0534 15 7 5.5757 -5.6141 6.9238 16 14 5.9201 -5.4791 9.6644 17 1 7.2912 -5.9809 9.3934 18 1 6.0007 -4.1562 10.3344 19 1 5.2074 -6.4380 10.5465 20 6 1.7657 -4.2128 6.6423 21 6 1.3104 -3.5642 5.5288 22 17 -0.3843 -3.5563 5.1524 23 6 2.3545 -2.8301 2.3449 24 6 1.7604 -2.1366 1.1167 25 1 0.6850 -2.3117 1.0849 26 6 2.4069 -2.6994 -0.1506 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.7432 1.9328 -0.9271 32 1 1.6130 1.9788 0.8474 33 1 3.1271 1.4436 0.0797 34 1 0.3456 -0.2747 2.3993 35 1 1.6411 0.9450 2.4613 36 1 1.5580 -0.4148 4.5472 37 1 3.0943 -0.6408 3.6768 38 1 5.0703 -3.4879 6.2152 39 1 5.0645 -5.6228 6.0995 40 1 1.0818 -4.7271 7.3011 41 1 3.4337 -2.6778 2.3620 42 1 2.1381 -3.8974 2.3000 43 1 3.4589 -2.4154 -0.1786 44 1 2.3239 -3.7862 -0.1489 45 1 1.8986 -2.2976 -1.0271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158501043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:02 Heat of formation + Delta-G solvation = 24.750953 kcal Electronic energy + Delta-G solvation = -25904.814097 eV Core-core repulsion = 22368.368950 eV Total energy + Delta-G solvation = -3536.445147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.96418 -38.68658 -36.10757 -35.61412 -34.12353 -32.81058 -31.35536 -30.92947 -28.89199 -27.28593 -27.09568 -26.03781 -24.36786 -22.51560 -22.01123 -21.23333 -20.38274 -18.67950 -18.27189 -16.64979 -15.85036 -15.71847 -15.22299 -14.94331 -14.88780 -14.20053 -14.11952 -14.00359 -13.49074 -13.29103 -12.90372 -12.80260 -12.52267 -12.42609 -12.18955 -12.04654 -11.89016 -11.68038 -11.59620 -11.52254 -11.32659 -11.27331 -11.13053 -10.89564 -10.68047 -10.55094 -10.36828 -10.25003 -10.23086 -10.07731 -9.36120 -8.62159 -8.49164 -8.13768 -7.78727 -7.69342 -7.52410 -4.77042 2.24074 2.50360 3.02861 3.08726 3.12498 3.24223 3.82475 3.94805 4.26465 4.41621 4.80102 4.96495 5.08571 5.11359 5.27617 5.30424 5.40446 5.48856 5.54614 5.62857 5.66467 5.70879 5.77606 5.83060 5.84871 5.91588 5.96318 6.02788 6.12706 6.15446 6.22173 6.24562 6.30205 6.41816 6.46540 6.57553 6.69289 6.80085 7.23088 7.25539 7.28728 7.32128 7.57841 7.62260 7.67652 8.06667 8.36690 8.44806 9.24631 9.72132 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.003430 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.696986 B = 8160.124645 C = 8803.189646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.142 4.142 4 N -0.526 5.526 5 C 0.057 3.943 6 C 0.067 3.933 7 N -0.460 5.460 8 C 0.124 3.876 9 N -0.459 5.459 10 C 0.000 4.000 11 C 0.057 3.943 12 C -0.492 4.492 13 H 0.084 0.916 14 C 0.037 3.963 15 N -0.775 5.775 16 Si 1.068 2.932 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.197 4.197 21 C 0.012 3.988 22 Cl -0.096 7.096 23 C 0.074 3.926 24 C 0.084 3.916 25 H 0.048 0.952 26 C -0.145 4.145 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.140 0.860 39 H 0.301 0.699 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 6.990 -9.156 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.038 4.038 3 C -0.199 4.199 4 N -0.251 5.251 5 C -0.071 4.071 6 C -0.061 4.061 7 N -0.182 5.182 8 C -0.102 4.102 9 N -0.169 5.169 10 C -0.167 4.167 11 C 0.051 3.949 12 C -0.519 4.519 13 H 0.103 0.897 14 C -0.187 4.187 15 N -0.396 5.396 16 Si 0.890 3.110 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.223 4.223 21 C -0.018 4.018 22 Cl -0.068 7.068 23 C -0.054 4.054 24 C -0.025 4.025 25 H 0.066 0.934 26 C -0.203 4.203 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.711 7.043 -9.215 12.178 hybrid contribution -2.352 -0.117 -0.091 2.357 sum -6.063 6.926 -9.307 13.090 Atomic orbital electron populations 1.22465 0.97841 1.02051 1.02076 1.21755 0.92560 0.95382 0.94070 1.21821 1.01916 0.95066 1.01139 1.62427 1.58141 1.02847 1.01681 1.22213 0.97235 0.98308 0.89363 1.22066 0.99677 0.87864 0.96509 1.59760 1.56091 1.02341 1.00010 1.18423 0.86960 1.08124 0.96668 1.67235 1.13883 1.16754 1.19030 1.22583 0.99605 1.00902 0.93592 1.18524 0.91066 0.91795 0.93488 1.20584 0.99485 1.31807 1.00064 0.89743 1.27232 0.95354 0.91609 1.04456 1.70500 1.41046 1.26699 1.01394 0.83589 0.76546 0.78243 0.72656 1.19504 1.19626 1.19807 1.20961 0.96307 1.06665 0.98406 1.21085 0.83114 1.00839 0.96788 1.98265 1.16203 1.97605 1.94718 1.22073 0.97781 0.97716 0.87803 1.21662 0.98306 0.87351 0.95139 0.93426 1.21856 1.01582 1.00608 0.96229 0.92165 0.92543 0.92557 0.89800 0.92700 0.92792 0.91864 0.93891 0.90700 0.91284 0.93361 0.84252 0.88564 0.86636 0.93176 0.91339 0.91728 0.92138 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 8.43 37.16 0.31 -1.60 16 2 C 0.07 0.78 2.69 -67.71 -0.18 0.60 16 3 C -0.14 -1.39 9.02 37.16 0.34 -1.05 16 4 N -0.53 -7.18 4.47 -218.57 -0.98 -8.16 16 5 C 0.06 0.81 4.74 -3.76 -0.02 0.79 16 6 C 0.07 1.18 5.44 -3.76 -0.02 1.16 16 7 N -0.46 -8.85 4.04 -172.92 -0.70 -9.55 16 8 C 0.12 2.78 5.32 -155.06 -0.83 1.95 16 9 N -0.46 -11.01 9.56 -11.75 -0.11 -11.12 16 10 C 0.00 0.00 9.20 -16.74 -0.15 -0.16 16 11 C 0.06 1.41 5.27 -106.65 -0.56 0.84 16 12 C -0.49 -11.93 8.98 -37.85 -0.34 -12.27 16 13 H 0.08 1.97 7.97 -52.49 -0.42 1.55 16 14 C 0.04 0.87 4.92 -17.34 -0.09 0.79 16 15 N -0.77 -19.08 12.33 55.54 0.68 -18.39 16 16 Si 1.07 19.67 30.00 -169.99 -5.10 14.57 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 19 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 20 C -0.20 -4.62 9.66 -38.99 -0.38 -5.00 16 21 C 0.01 0.27 6.32 -39.57 -0.25 0.02 16 22 Cl -0.10 -1.86 28.43 -51.86 -1.47 -3.33 16 23 C 0.07 1.32 4.70 -3.77 -0.02 1.31 16 24 C 0.08 1.20 2.29 -67.66 -0.16 1.05 16 25 H 0.05 0.72 6.77 -51.93 -0.35 0.36 16 26 C -0.14 -1.74 8.65 37.15 0.32 -1.42 16 27 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.62 6.77 -51.93 -0.35 0.27 16 30 H 0.08 0.89 5.87 -51.93 -0.30 0.58 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.53 6.71 -51.93 -0.35 0.18 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.62 6.41 -51.93 -0.33 0.29 16 35 H 0.07 0.96 6.45 -51.93 -0.33 0.62 16 36 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.05 0.94 7.97 -51.93 -0.41 0.53 16 38 H 0.14 3.54 6.62 -52.49 -0.35 3.19 16 39 H 0.30 7.69 6.88 -40.82 -0.28 7.41 16 40 H 0.12 2.56 8.06 -52.49 -0.42 2.13 16 41 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 42 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.56 6.55 -51.93 -0.34 0.22 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -25.01 360.11 -11.01 -36.02 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.74 Total: 7.54 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.02 Total: -13.00 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.10 Total: -47.22 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.10 Total: 14.57 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -1.47 Total: -3.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -25.01 -11.01 -36.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158501043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.775 kcal (2) G-P(sol) polarization free energy of solvation -25.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds