Wall clock time and date at job start Tue Mar 31 2020 14:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 N 1.46899 * 109.47099 * 119.99551 * 2 1 3 5 5 C 1.46963 * 111.00306 * 306.55937 * 4 2 1 6 6 C 1.53050 * 109.36697 * 183.19019 * 5 4 2 7 7 N 1.46962 * 109.36153 * 301.59263 * 6 5 4 8 8 C 1.38405 * 111.00058 * 183.18655 * 7 6 5 9 9 N 1.32742 * 119.44115 * 296.60466 * 8 7 6 10 10 C 1.31469 * 121.74536 * 179.97438 * 9 8 7 11 11 C 1.40796 * 120.38480 * 359.97438 * 10 9 8 12 12 C 1.41197 * 120.56423 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00097 * 153.52595 * 12 11 10 14 14 C 1.39869 * 119.99686 * 333.52301 * 12 11 10 15 15 N 1.30901 * 120.00293 * 333.96716 * 14 12 11 16 16 Si 1.86797 * 119.99571 * 153.68482 * 14 12 11 17 17 H 1.48502 * 109.47237 * 180.27823 * 16 14 12 18 18 H 1.48505 * 109.47642 * 300.27810 * 16 14 12 19 19 H 1.48505 * 109.47210 * 60.28061 * 16 14 12 20 20 C 1.41283 * 118.86948 * 0.25634 * 11 10 9 21 21 C 1.36667 * 118.40310 * 359.49368 * 20 11 10 22 22 Cl 1.73595 * 120.26707 * 180.22465 * 21 20 11 23 23 C 1.46963 * 110.87564 * 59.32241 * 7 6 5 24 24 C 1.46965 * 111.00156 * 70.35591 * 4 2 1 25 25 H 1.08996 * 109.48586 * 296.78010 * 24 4 2 26 26 C 1.52995 * 109.48746 * 56.81878 * 24 4 2 27 27 H 1.08997 * 109.47293 * 300.00389 * 1 2 3 28 28 H 1.08993 * 109.47211 * 60.00429 * 1 2 3 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 239.99611 * 2 1 3 31 31 H 1.08996 * 109.46878 * 295.55338 * 3 2 1 32 32 H 1.08997 * 109.47133 * 55.54840 * 3 2 1 33 33 H 1.09000 * 109.47277 * 175.55002 * 3 2 1 34 34 H 1.08994 * 109.48738 * 63.21903 * 5 4 2 35 35 H 1.09002 * 109.48127 * 303.15460 * 5 4 2 36 36 H 1.08996 * 109.48617 * 181.62810 * 6 5 4 37 37 H 1.09000 * 109.50872 * 61.57041 * 6 5 4 38 38 H 1.07997 * 119.81129 * 180.02562 * 10 9 8 39 39 H 0.96995 * 119.99749 * 352.65543 * 15 14 12 40 40 H 1.07999 * 120.79390 * 179.73081 * 20 11 10 41 41 H 1.09001 * 109.48661 * 60.64964 * 23 7 6 42 42 H 1.09002 * 109.48127 * 180.70996 * 23 7 6 43 43 H 1.09005 * 109.46823 * 52.90528 * 26 24 4 44 44 H 1.08995 * 109.47111 * 172.90442 * 26 24 4 45 45 H 1.09000 * 109.47557 * 292.90650 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4247 -0.1224 2.4164 6 6 2.0189 -0.8159 3.6446 7 7 1.7596 -2.2601 3.5618 8 6 2.2210 -2.9125 4.6919 9 7 3.5203 -2.9075 4.9634 10 6 4.0076 -3.5121 6.0242 11 6 3.1521 -4.1899 6.9135 12 6 3.6714 -4.8409 8.0538 13 1 3.0501 -4.9799 8.9261 14 6 4.9906 -5.3057 8.0534 15 7 5.5757 -5.6141 6.9238 16 14 5.9201 -5.4791 9.6644 17 1 7.2912 -5.9809 9.3934 18 1 6.0007 -4.1562 10.3344 19 1 5.2074 -6.4380 10.5465 20 6 1.7657 -4.2128 6.6423 21 6 1.3104 -3.5642 5.5288 22 17 -0.3843 -3.5563 5.1524 23 6 2.3545 -2.8301 2.3449 24 6 1.7604 -2.1366 1.1167 25 1 0.6850 -2.3117 1.0849 26 6 2.4069 -2.6994 -0.1506 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.7432 1.9328 -0.9271 32 1 1.6130 1.9788 0.8474 33 1 3.1271 1.4436 0.0797 34 1 0.3456 -0.2747 2.3993 35 1 1.6411 0.9450 2.4613 36 1 1.5580 -0.4148 4.5472 37 1 3.0943 -0.6408 3.6768 38 1 5.0703 -3.4879 6.2152 39 1 5.0645 -5.6228 6.0995 40 1 1.0818 -4.7271 7.3011 41 1 3.4337 -2.6778 2.3620 42 1 2.1381 -3.8974 2.3000 43 1 3.4589 -2.4154 -0.1786 44 1 2.3239 -3.7862 -0.1489 45 1 1.8986 -2.2976 -1.0271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158501043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:01 Heat of formation + Delta-G solvation = 11.924412 kcal Electronic energy + Delta-G solvation = -25905.370297 eV Core-core repulsion = 22368.368950 eV Total energy + Delta-G solvation = -3537.001348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42368 -40.21937 -37.61193 -37.29257 -35.79611 -34.00394 -33.01331 -32.38389 -30.57693 -28.30600 -28.07339 -27.60157 -25.94800 -24.18796 -23.59724 -22.64651 -21.71224 -20.09330 -19.83459 -18.15472 -17.55662 -17.03756 -16.77148 -16.43527 -16.13104 -15.71133 -15.31935 -15.06918 -15.02969 -14.86923 -14.45283 -14.11471 -13.99842 -13.72481 -13.56130 -13.39395 -13.09066 -12.96233 -12.89301 -12.85520 -12.64917 -12.54148 -12.30232 -12.12791 -12.05636 -11.90628 -11.83995 -11.82236 -11.52600 -11.24857 -11.08839 -10.44879 -10.30227 -9.54471 -9.50280 -9.38112 -9.17067 -6.66837 0.39637 0.63121 1.33881 1.52719 1.60880 1.81989 2.28191 2.49861 2.85011 2.89785 3.26003 3.78617 3.90513 4.02359 4.07804 4.18956 4.26497 4.30489 4.32397 4.38586 4.45462 4.47468 4.50190 4.65863 4.72722 4.77675 4.79434 4.82208 4.85781 4.90894 4.96100 5.00453 5.03192 5.07035 5.21253 5.27546 5.36305 5.39503 5.44262 5.47254 5.72276 5.79688 5.98459 6.18325 6.19815 6.27743 6.55426 6.64636 7.36374 7.83339 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.003430 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.696986 B = 8160.124645 C = 8803.189646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.070 3.930 3 C -0.138 4.138 4 N -0.537 5.537 5 C 0.069 3.931 6 C 0.069 3.931 7 N -0.458 5.458 8 C 0.129 3.871 9 N -0.472 5.472 10 C -0.018 4.018 11 C 0.038 3.962 12 C -0.515 4.515 13 H 0.090 0.910 14 C 0.008 3.992 15 N -0.794 5.794 16 Si 1.119 2.881 17 H -0.272 1.272 18 H -0.261 1.261 19 H -0.252 1.252 20 C -0.202 4.202 21 C 0.003 3.997 22 Cl -0.065 7.065 23 C 0.078 3.922 24 C 0.093 3.907 25 H 0.048 0.952 26 C -0.138 4.138 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.126 0.874 39 H 0.284 0.716 40 H 0.126 0.874 41 H 0.025 0.975 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 7.919 -10.082 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.037 4.037 3 C -0.196 4.196 4 N -0.262 5.262 5 C -0.059 4.059 6 C -0.059 4.059 7 N -0.180 5.180 8 C -0.099 4.099 9 N -0.182 5.182 10 C -0.183 4.183 11 C 0.033 3.967 12 C -0.542 4.542 13 H 0.108 0.892 14 C -0.211 4.211 15 N -0.415 5.415 16 Si 0.934 3.066 17 H -0.196 1.196 18 H -0.186 1.186 19 H -0.176 1.176 20 C -0.228 4.228 21 C -0.028 4.028 22 Cl -0.036 7.036 23 C -0.050 4.050 24 C -0.016 4.016 25 H 0.065 0.935 26 C -0.196 4.196 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.144 0.856 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.034 7.977 -10.155 13.860 hybrid contribution -2.082 -0.344 0.077 2.112 sum -7.116 7.632 -10.079 14.507 Atomic orbital electron populations 1.22407 0.96955 1.01728 1.02801 1.21870 0.93227 0.95845 0.92799 1.21799 1.01241 0.94286 1.02248 1.62420 1.58709 1.02519 1.02573 1.22094 0.96969 0.98765 0.88120 1.22073 0.98422 0.86999 0.98372 1.59898 1.55572 1.03135 0.99434 1.18850 0.86501 1.07247 0.97280 1.67242 1.15041 1.16998 1.18967 1.22406 0.99138 1.02190 0.94544 1.18743 0.91849 0.92238 0.93894 1.20815 1.00541 1.32640 1.00205 0.89172 1.28627 0.95909 0.89980 1.06589 1.70612 1.40836 1.28694 1.01399 0.82983 0.75370 0.79070 0.69150 1.19607 1.18590 1.17636 1.21148 0.96038 1.06688 0.98911 1.21185 0.84938 1.00261 0.96386 1.98264 1.13400 1.97454 1.94502 1.22063 0.96440 0.97617 0.88872 1.21550 0.98018 0.87817 0.94181 0.93457 1.21814 1.01175 1.00851 0.95777 0.92688 0.90588 0.93368 0.88938 0.90607 0.92878 0.92805 0.93552 0.88874 0.91876 0.95729 0.85705 0.90378 0.85566 0.95707 0.92505 0.92390 0.91814 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.43 71.98 0.61 -2.54 16 2 C 0.07 1.35 2.69 44.92 0.12 1.47 16 3 C -0.14 -2.31 9.02 71.98 0.65 -1.66 16 4 N -0.54 -13.81 4.47 -845.41 -3.78 -17.59 16 5 C 0.07 1.86 4.74 86.31 0.41 2.26 16 6 C 0.07 2.44 5.44 86.31 0.47 2.91 16 7 N -0.46 -17.74 4.04 -700.99 -2.84 -20.57 16 8 C 0.13 5.87 5.32 133.33 0.71 6.58 16 9 N -0.47 -23.57 9.56 -191.08 -1.83 -25.40 16 10 C -0.02 -0.92 9.20 85.37 0.79 -0.13 16 11 C 0.04 1.95 5.27 -21.18 -0.11 1.83 16 12 C -0.51 -25.48 8.98 23.39 0.21 -25.27 16 13 H 0.09 4.24 7.97 -2.91 -0.02 4.22 16 14 C 0.01 0.36 4.92 85.23 0.42 0.78 16 15 N -0.79 -40.42 12.33 21.82 0.27 -40.15 16 16 Si 1.12 39.30 30.00 68.60 2.06 41.36 16 17 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 18 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 19 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 20 C -0.20 -9.55 9.66 22.65 0.22 -9.33 16 21 C 0.00 0.12 6.32 22.28 0.14 0.26 16 22 Cl -0.06 -2.43 28.43 -2.72 -0.08 -2.51 16 23 C 0.08 2.81 4.70 86.30 0.41 3.22 16 24 C 0.09 2.56 2.29 44.92 0.10 2.66 16 25 H 0.05 1.33 6.77 -2.39 -0.02 1.32 16 26 C -0.14 -3.09 8.65 71.98 0.62 -2.46 16 27 H 0.05 1.02 6.40 -2.39 -0.02 1.01 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.93 6.77 -2.38 -0.02 0.91 16 30 H 0.09 1.65 5.87 -2.39 -0.01 1.63 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.90 6.71 -2.39 -0.02 0.88 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.25 6.41 -2.39 -0.02 1.23 16 35 H 0.09 2.20 6.45 -2.39 -0.02 2.19 16 36 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 37 H 0.02 0.98 7.97 -2.39 -0.02 0.96 16 38 H 0.13 6.74 6.62 -2.91 -0.02 6.72 16 39 H 0.28 15.29 6.88 -92.71 -0.64 14.65 16 40 H 0.13 5.58 8.06 -2.91 -0.02 5.56 16 41 H 0.02 1.01 7.92 -2.39 -0.02 0.99 16 42 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 43 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.38 6.55 -2.39 -0.02 1.36 16 Total: -1.00 -55.40 360.11 0.68 -54.72 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 1.12 Total: 29.56 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 5.76 Total: -19.43 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -8.18 Total: -103.71 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.06 Total: 41.36 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -55.40 0.68 -54.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158501043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.643 kcal (2) G-P(sol) polarization free energy of solvation -55.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds