Wall clock time and date at job start Tue Mar 31 2020 14:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47212 * 2 1 4 4 C 1.46957 * 111.00028 * 293.79973 * 3 2 1 5 5 C 1.53046 * 109.36450 * 176.81499 * 4 3 2 6 6 N 1.46953 * 109.36731 * 58.39675 * 5 4 3 7 7 C 1.38408 * 110.99837 * 176.81305 * 6 5 4 8 8 N 1.32743 * 119.44007 * 55.36424 * 7 6 5 9 9 C 1.31469 * 121.74187 * 179.97438 * 8 7 6 10 10 C 1.40787 * 120.38923 * 359.97438 * 9 8 7 11 11 C 1.41201 * 120.56638 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99465 * 24.16886 * 11 10 9 13 13 C 1.39856 * 120.00032 * 204.17626 * 11 10 9 14 14 N 1.30902 * 120.00293 * 17.13332 * 13 11 10 15 15 Si 1.86802 * 120.00085 * 197.13864 * 13 11 10 16 16 H 1.48502 * 109.47396 * 94.92867 * 15 13 11 17 17 H 1.48501 * 109.47317 * 214.92977 * 15 13 11 18 18 H 1.48501 * 109.46736 * 334.92724 * 15 13 11 19 19 C 1.41283 * 118.87131 * 359.97438 * 10 9 8 20 20 C 1.36673 * 118.40039 * 359.74743 * 19 10 9 21 21 Cl 1.73600 * 120.26471 * 180.25969 * 20 19 10 22 22 C 1.46957 * 110.88257 * 300.68268 * 6 5 4 23 23 C 1.52999 * 109.48719 * 299.34964 * 22 6 5 24 24 C 1.52993 * 109.50550 * 179.29635 * 22 6 5 25 25 C 1.46951 * 110.99694 * 170.00007 * 3 2 1 26 26 H 1.09003 * 109.47285 * 300.00399 * 1 2 3 27 27 H 1.09008 * 109.47206 * 59.99636 * 1 2 3 28 28 H 1.08997 * 109.47518 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46784 * 239.99653 * 2 1 3 30 30 H 1.08996 * 109.46926 * 119.99728 * 2 1 3 31 31 H 1.09001 * 109.48404 * 296.77804 * 4 3 2 32 32 H 1.09004 * 109.49007 * 56.84223 * 4 3 2 33 33 H 1.08995 * 109.48973 * 178.36962 * 5 4 3 34 34 H 1.09003 * 109.48909 * 298.40852 * 5 4 3 35 35 H 1.07999 * 119.80045 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00603 * 179.97438 * 14 13 11 37 37 H 1.08006 * 120.80166 * 179.97438 * 19 10 9 38 38 H 1.09002 * 109.47381 * 179.88749 * 23 22 6 39 39 H 1.09004 * 109.47234 * 59.89448 * 23 22 6 40 40 H 1.08994 * 109.47454 * 299.89276 * 23 22 6 41 41 H 1.09007 * 109.46977 * 185.69996 * 24 22 6 42 42 H 1.08993 * 109.47891 * 305.70278 * 24 22 6 43 43 H 1.09001 * 109.47394 * 65.70911 * 24 22 6 44 44 H 1.09001 * 109.49206 * 63.22398 * 25 3 2 45 45 H 1.08997 * 109.49149 * 303.15072 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6733 2.0661 -1.2553 5 6 2.1296 3.5252 -1.1837 6 7 3.5790 3.5713 -0.9454 7 6 4.0403 4.8762 -0.9454 8 7 3.4920 5.7621 -0.1228 9 6 3.8952 7.0129 -0.0849 10 6 4.9343 7.4520 -0.9272 11 6 5.3707 8.7944 -0.8892 12 1 5.2186 9.3866 0.0010 13 6 5.9998 9.3570 -2.0044 14 7 5.8925 8.7825 -3.1757 15 14 6.9934 10.9284 -1.8225 16 1 8.4257 10.5886 -1.6270 17 1 6.8432 11.7537 -3.0479 18 1 6.5010 11.6921 -0.6480 19 6 5.5338 6.5265 -1.8104 20 6 5.0812 5.2369 -1.8061 21 17 5.7877 4.0581 -2.8667 22 6 3.9254 2.8902 0.3099 23 6 3.2258 3.5871 1.4786 24 6 5.4403 2.9416 0.5178 25 6 3.4690 1.4311 0.2382 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1717 1.5696 -2.0879 32 1 0.5939 2.0294 -1.4031 33 1 1.8997 4.0247 -2.1247 34 1 1.6105 4.0290 -0.3683 35 1 3.4265 7.7075 0.5964 36 1 6.3284 9.1729 -3.9493 37 1 6.3331 6.8298 -2.4705 38 1 3.4813 3.0805 2.4093 39 1 2.1466 3.5510 1.3298 40 1 3.5510 4.6262 1.5294 41 1 5.7070 2.3507 1.3941 42 1 5.9417 2.5355 -0.3606 43 1 5.7515 3.9754 0.6683 44 1 3.9879 0.9275 -0.5774 45 1 3.6989 0.9316 1.1793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158569428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:08 Heat of formation + Delta-G solvation = 39.197967 kcal Electronic energy + Delta-G solvation = -26483.126935 eV Core-core repulsion = 22947.308257 eV Total energy + Delta-G solvation = -3535.818678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17107 -38.17848 -35.85811 -35.36937 -34.05465 -32.52434 -31.02154 -30.55348 -29.36927 -27.59488 -26.66053 -25.47243 -24.19419 -22.76984 -21.87337 -21.23764 -20.55620 -18.22202 -17.60233 -16.38351 -15.70781 -15.50369 -15.22827 -14.87678 -14.76910 -14.52346 -14.25982 -13.68698 -13.21807 -12.96333 -12.81139 -12.60001 -12.16340 -12.08553 -12.01491 -11.93016 -11.61931 -11.56991 -11.42109 -11.33847 -11.27614 -11.07227 -10.84699 -10.79799 -10.72947 -10.52407 -10.37028 -10.34672 -10.01234 -9.80199 -9.47375 -8.42156 -8.19148 -8.11798 -7.72354 -7.50345 -7.00344 -4.64765 2.35465 2.72863 2.94633 2.98327 3.01224 3.35209 3.73377 4.03199 4.34591 4.46238 4.96748 5.12376 5.21593 5.31064 5.43192 5.49182 5.57392 5.61695 5.70611 5.75456 5.82490 5.91413 5.95164 5.96472 6.01956 6.14017 6.17508 6.25032 6.32013 6.43550 6.50540 6.57475 6.62356 6.67832 6.79513 6.83800 6.95211 7.02742 7.13447 7.24885 7.26072 7.55827 7.70855 7.74003 8.08118 8.31735 8.48022 8.58619 9.36061 9.88013 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.003685 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.238420 B = 7595.678881 C = 7920.596275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.058 3.942 5 C 0.065 3.935 6 N -0.453 5.453 7 C 0.146 3.854 8 N -0.461 5.461 9 C -0.017 4.017 10 C 0.074 3.926 11 C -0.439 4.439 12 H 0.088 0.912 13 C 0.073 3.927 14 N -0.778 5.778 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.259 1.259 19 C -0.136 4.136 20 C -0.008 4.008 21 Cl -0.100 7.100 22 C 0.118 3.882 23 C -0.164 4.164 24 C -0.134 4.134 25 C 0.073 3.927 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.130 0.870 36 H 0.287 0.713 37 H 0.137 0.863 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -10.258 3.125 11.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 N -0.260 5.260 4 C -0.071 4.071 5 C -0.063 4.063 6 N -0.176 5.176 7 C -0.082 4.082 8 N -0.172 5.172 9 C -0.181 4.181 10 C 0.069 3.931 11 C -0.468 4.468 12 H 0.106 0.894 13 C -0.148 4.148 14 N -0.402 5.402 15 Si 0.739 3.261 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.183 1.183 19 C -0.163 4.163 20 C -0.038 4.038 21 Cl -0.072 7.072 22 C 0.029 3.971 23 C -0.222 4.222 24 C -0.192 4.192 25 C -0.056 4.056 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.978 -10.641 3.293 11.828 hybrid contribution 1.195 0.915 -0.800 1.705 sum -2.782 -9.726 2.493 10.419 Atomic orbital electron populations 1.21786 0.95135 1.01064 1.02520 1.22029 0.95916 0.89415 1.00329 1.62165 1.14193 1.14810 1.34848 1.22227 0.99917 0.94915 0.89995 1.22044 0.88364 0.94574 1.01315 1.59969 1.13243 1.11986 1.32370 1.18376 1.00230 0.89391 1.00229 1.67270 1.27798 1.03497 1.18593 1.22391 0.98950 0.91615 1.05135 1.18454 0.89994 0.93848 0.90781 1.19583 1.31374 0.96002 0.99812 0.89421 1.26034 0.94693 0.99670 0.94384 1.69810 1.32239 1.38268 0.99847 0.86167 0.80314 0.80407 0.79229 1.19062 1.20008 1.18250 1.21337 1.02283 0.89365 1.03296 1.21129 0.97368 0.90243 0.95048 1.98253 1.83489 1.59862 1.65607 1.20970 0.94948 0.92064 0.89165 1.22460 1.01551 1.02046 0.96183 1.21756 0.94417 1.02144 1.00845 1.22151 0.86916 0.96389 1.00119 0.91937 0.92661 0.92719 0.95260 0.91207 0.94483 0.90699 0.91235 0.92538 0.85233 0.90177 0.84531 0.94603 0.91890 0.90087 0.93182 0.92038 0.92315 0.94475 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.85 37.16 0.37 -1.07 16 2 C 0.05 0.57 5.68 -3.82 -0.02 0.55 16 3 N -0.54 -7.40 4.03 -234.47 -0.94 -8.35 16 4 C 0.06 0.83 5.41 -3.77 -0.02 0.81 16 5 C 0.06 1.14 4.99 -3.77 -0.02 1.12 16 6 N -0.45 -8.53 3.85 -158.13 -0.61 -9.14 16 7 C 0.15 3.16 3.87 -155.05 -0.60 2.56 16 8 N -0.46 -10.29 6.71 -11.75 -0.08 -10.37 16 9 C -0.02 -0.40 10.97 -16.74 -0.18 -0.58 16 10 C 0.07 1.82 5.59 -106.65 -0.60 1.22 16 11 C -0.44 -10.53 9.06 -37.85 -0.34 -10.87 16 12 H 0.09 1.99 7.90 -52.49 -0.41 1.58 16 13 C 0.07 1.67 5.18 -17.34 -0.09 1.58 16 14 N -0.78 -18.61 10.93 55.54 0.61 -18.00 16 15 Si 0.92 17.17 29.59 -169.99 -5.03 12.14 16 16 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 17 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 C -0.14 -3.33 8.52 -38.99 -0.33 -3.66 16 20 C -0.01 -0.17 6.17 -39.57 -0.24 -0.42 16 21 Cl -0.10 -2.04 28.37 -51.86 -1.47 -3.51 16 22 C 0.12 1.99 0.68 -131.55 -0.09 1.90 16 23 C -0.16 -2.86 7.38 37.16 0.27 -2.58 16 24 C -0.13 -2.25 8.08 37.15 0.30 -1.95 16 25 C 0.07 1.06 4.32 -3.77 -0.02 1.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.55 6.49 -51.92 -0.34 0.21 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 33 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.06 1.07 6.04 -51.93 -0.31 0.75 16 35 H 0.13 2.79 8.06 -52.49 -0.42 2.36 16 36 H 0.29 6.24 8.30 -40.82 -0.34 5.91 16 37 H 0.14 3.46 6.21 -52.48 -0.33 3.14 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.13 5.94 -51.93 -0.31 0.83 16 40 H 0.08 1.62 5.58 -51.93 -0.29 1.33 16 41 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.06 1.13 7.33 -51.93 -0.38 0.75 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -24.53 358.00 -10.64 -35.17 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.89 Total: 7.02 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.62 Total: -10.35 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -1.02 Total: -45.86 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -1.47 Total: -3.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -24.53 -10.64 -35.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158569428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.367 kcal (2) G-P(sol) polarization free energy of solvation -24.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds