Wall clock time and date at job start Tue Mar 31 2020 14:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47212 * 2 1 4 4 C 1.46957 * 111.00028 * 293.79973 * 3 2 1 5 5 C 1.53046 * 109.36450 * 176.81499 * 4 3 2 6 6 N 1.46953 * 109.36731 * 58.39675 * 5 4 3 7 7 C 1.38408 * 110.99837 * 176.81305 * 6 5 4 8 8 N 1.32743 * 119.44007 * 55.36424 * 7 6 5 9 9 C 1.31469 * 121.74187 * 179.97438 * 8 7 6 10 10 C 1.40787 * 120.38923 * 359.97438 * 9 8 7 11 11 C 1.41201 * 120.56638 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99465 * 24.16886 * 11 10 9 13 13 C 1.39856 * 120.00032 * 204.17626 * 11 10 9 14 14 N 1.30902 * 120.00293 * 17.13332 * 13 11 10 15 15 Si 1.86802 * 120.00085 * 197.13864 * 13 11 10 16 16 H 1.48502 * 109.47396 * 94.92867 * 15 13 11 17 17 H 1.48501 * 109.47317 * 214.92977 * 15 13 11 18 18 H 1.48501 * 109.46736 * 334.92724 * 15 13 11 19 19 C 1.41283 * 118.87131 * 359.97438 * 10 9 8 20 20 C 1.36673 * 118.40039 * 359.74743 * 19 10 9 21 21 Cl 1.73600 * 120.26471 * 180.25969 * 20 19 10 22 22 C 1.46957 * 110.88257 * 300.68268 * 6 5 4 23 23 C 1.52999 * 109.48719 * 299.34964 * 22 6 5 24 24 C 1.52993 * 109.50550 * 179.29635 * 22 6 5 25 25 C 1.46951 * 110.99694 * 170.00007 * 3 2 1 26 26 H 1.09003 * 109.47285 * 300.00399 * 1 2 3 27 27 H 1.09008 * 109.47206 * 59.99636 * 1 2 3 28 28 H 1.08997 * 109.47518 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46784 * 239.99653 * 2 1 3 30 30 H 1.08996 * 109.46926 * 119.99728 * 2 1 3 31 31 H 1.09001 * 109.48404 * 296.77804 * 4 3 2 32 32 H 1.09004 * 109.49007 * 56.84223 * 4 3 2 33 33 H 1.08995 * 109.48973 * 178.36962 * 5 4 3 34 34 H 1.09003 * 109.48909 * 298.40852 * 5 4 3 35 35 H 1.07999 * 119.80045 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00603 * 179.97438 * 14 13 11 37 37 H 1.08006 * 120.80166 * 179.97438 * 19 10 9 38 38 H 1.09002 * 109.47381 * 179.88749 * 23 22 6 39 39 H 1.09004 * 109.47234 * 59.89448 * 23 22 6 40 40 H 1.08994 * 109.47454 * 299.89276 * 23 22 6 41 41 H 1.09007 * 109.46977 * 185.69996 * 24 22 6 42 42 H 1.08993 * 109.47891 * 305.70278 * 24 22 6 43 43 H 1.09001 * 109.47394 * 65.70911 * 24 22 6 44 44 H 1.09001 * 109.49206 * 63.22398 * 25 3 2 45 45 H 1.08997 * 109.49149 * 303.15072 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6733 2.0661 -1.2553 5 6 2.1296 3.5252 -1.1837 6 7 3.5790 3.5713 -0.9454 7 6 4.0403 4.8762 -0.9454 8 7 3.4920 5.7621 -0.1228 9 6 3.8952 7.0129 -0.0849 10 6 4.9343 7.4520 -0.9272 11 6 5.3707 8.7944 -0.8892 12 1 5.2186 9.3866 0.0010 13 6 5.9998 9.3570 -2.0044 14 7 5.8925 8.7825 -3.1757 15 14 6.9934 10.9284 -1.8225 16 1 8.4257 10.5886 -1.6270 17 1 6.8432 11.7537 -3.0479 18 1 6.5010 11.6921 -0.6480 19 6 5.5338 6.5265 -1.8104 20 6 5.0812 5.2369 -1.8061 21 17 5.7877 4.0581 -2.8667 22 6 3.9254 2.8902 0.3099 23 6 3.2258 3.5871 1.4786 24 6 5.4403 2.9416 0.5178 25 6 3.4690 1.4311 0.2382 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1717 1.5696 -2.0879 32 1 0.5939 2.0294 -1.4031 33 1 1.8997 4.0247 -2.1247 34 1 1.6105 4.0290 -0.3683 35 1 3.4265 7.7075 0.5964 36 1 6.3284 9.1729 -3.9493 37 1 6.3331 6.8298 -2.4705 38 1 3.4813 3.0805 2.4093 39 1 2.1466 3.5510 1.3298 40 1 3.5510 4.6262 1.5294 41 1 5.7070 2.3507 1.3941 42 1 5.9417 2.5355 -0.3606 43 1 5.7515 3.9754 0.6683 44 1 3.9879 0.9275 -0.5774 45 1 3.6989 0.9316 1.1793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158569428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:07 Heat of formation + Delta-G solvation = 27.552473 kcal Electronic energy + Delta-G solvation = -26483.631921 eV Core-core repulsion = 22947.308257 eV Total energy + Delta-G solvation = -3536.323664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65503 -39.72851 -37.19105 -37.08872 -35.72239 -33.94879 -32.45008 -32.14708 -30.83412 -29.00701 -28.06040 -27.01405 -25.56251 -24.02789 -23.57470 -22.91441 -21.67925 -19.66652 -19.38374 -17.79397 -17.39883 -16.96511 -16.76049 -16.14840 -16.04897 -15.92337 -15.68564 -14.99153 -14.64918 -14.43605 -14.25563 -14.10655 -13.75052 -13.60338 -13.29691 -13.23868 -13.00027 -12.95237 -12.89542 -12.65716 -12.57955 -12.41138 -12.35964 -12.19206 -12.02423 -11.94049 -11.92861 -11.57407 -11.51320 -11.38587 -11.14807 -10.10610 -10.00812 -9.42972 -9.26394 -9.12616 -8.73562 -6.48090 0.58873 0.90616 1.39741 1.48734 1.53786 1.57701 2.16143 2.60353 2.95108 2.99454 3.52651 3.81071 4.02115 4.15138 4.22611 4.29413 4.33108 4.42070 4.48189 4.53209 4.66580 4.69038 4.72263 4.73855 4.81463 4.82544 4.86203 4.96558 5.00367 5.04442 5.06640 5.13174 5.16369 5.20555 5.23304 5.31039 5.39354 5.42258 5.65747 5.75596 5.88097 6.09126 6.19825 6.28219 6.31370 6.55268 6.68395 6.85834 7.55376 8.17474 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.003685 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.238420 B = 7595.678881 C = 7920.596275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.069 3.931 5 C 0.067 3.933 6 N -0.457 5.457 7 C 0.156 3.844 8 N -0.461 5.461 9 C -0.029 4.029 10 C 0.052 3.948 11 C -0.466 4.466 12 H 0.093 0.907 13 C 0.036 3.964 14 N -0.810 5.810 15 Si 0.987 3.013 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.253 1.253 19 C -0.153 4.153 20 C -0.018 4.018 21 Cl -0.081 7.081 22 C 0.114 3.886 23 C -0.152 4.152 24 C -0.127 4.127 25 C 0.080 3.920 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.140 0.860 36 H 0.294 0.706 37 H 0.122 0.878 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.035 0.965 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 -11.777 3.753 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 N -0.267 5.267 4 C -0.060 4.060 5 C -0.061 4.061 6 N -0.180 5.180 7 C -0.073 4.073 8 N -0.172 5.172 9 C -0.192 4.192 10 C 0.047 3.953 11 C -0.495 4.495 12 H 0.111 0.889 13 C -0.182 4.182 14 N -0.435 5.435 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.176 1.176 19 C -0.179 4.179 20 C -0.049 4.049 21 Cl -0.052 7.052 22 C 0.025 3.975 23 C -0.211 4.211 24 C -0.185 4.185 25 C -0.049 4.049 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.158 0.842 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.284 -12.180 3.928 13.495 hybrid contribution 1.239 1.247 -0.996 2.021 sum -3.045 -10.932 2.932 11.721 Atomic orbital electron populations 1.21758 0.94044 1.02242 1.02035 1.22123 0.96758 0.87638 1.01106 1.62175 1.13641 1.16700 1.34215 1.22100 1.00878 0.92579 0.90410 1.22025 0.87378 0.96818 0.99885 1.60042 1.14026 1.10208 1.33729 1.18654 0.99270 0.90446 0.98944 1.67378 1.27859 1.03310 1.18661 1.22593 0.98994 0.92243 1.05405 1.18721 0.90644 0.94536 0.91402 1.19851 1.32805 0.96171 1.00651 0.88931 1.26863 0.94963 1.02760 0.93576 1.69859 1.32986 1.39935 1.00676 0.85094 0.78470 0.76305 0.79400 1.18762 1.19317 1.17639 1.21276 1.02583 0.90294 1.03797 1.21271 0.97735 0.90317 0.95551 1.98244 1.83189 1.58859 1.64929 1.21105 0.94971 0.93536 0.87875 1.22301 1.00958 1.00521 0.97295 1.21705 0.94349 1.00552 1.01938 1.22073 0.87458 0.94190 1.01164 0.92536 0.92989 0.90765 0.94897 0.89936 0.94751 0.88853 0.92734 0.94002 0.84250 0.89489 0.85985 0.92768 0.92554 0.92929 0.90337 0.92484 0.95457 0.94704 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.85 71.98 0.71 -1.64 16 2 C 0.05 0.97 5.68 86.30 0.49 1.46 16 3 N -0.54 -13.60 4.03 -895.73 -3.61 -17.21 16 4 C 0.07 1.87 5.41 86.31 0.47 2.33 16 5 C 0.07 2.32 4.99 86.31 0.43 2.75 16 6 N -0.46 -17.10 3.85 -654.20 -2.52 -19.61 16 7 C 0.16 6.86 3.87 133.32 0.52 7.38 16 8 N -0.46 -21.13 6.71 -191.09 -1.28 -22.41 16 9 C -0.03 -1.40 10.97 85.37 0.94 -0.46 16 10 C 0.05 2.64 5.59 -21.18 -0.12 2.52 16 11 C -0.47 -23.00 9.06 23.39 0.21 -22.79 16 12 H 0.09 4.31 7.90 -2.91 -0.02 4.29 16 13 C 0.04 1.67 5.18 85.22 0.44 2.11 16 14 N -0.81 -39.67 10.93 21.81 0.24 -39.43 16 15 Si 0.99 35.22 29.59 68.60 2.03 37.25 16 16 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 17 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 18 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 19 C -0.15 -7.74 8.52 22.65 0.19 -7.55 16 20 C -0.02 -0.86 6.17 22.28 0.14 -0.72 16 21 Cl -0.08 -3.28 28.37 -2.72 -0.08 -3.36 16 22 C 0.11 3.71 0.68 3.53 0.00 3.71 16 23 C -0.15 -5.16 7.38 71.98 0.53 -4.63 16 24 C -0.13 -4.16 8.08 71.98 0.58 -3.58 16 25 C 0.08 2.11 4.32 86.31 0.37 2.48 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.88 6.49 -2.38 -0.02 0.87 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 2.21 6.34 -2.39 -0.02 2.19 16 33 H 0.05 2.03 8.13 -2.39 -0.02 2.01 16 34 H 0.04 1.58 6.04 -2.39 -0.01 1.57 16 35 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16 36 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 37 H 0.12 6.46 6.21 -2.91 -0.02 6.45 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.97 5.94 -2.39 -0.01 1.96 16 40 H 0.05 2.10 5.58 -2.39 -0.01 2.09 16 41 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 43 H 0.03 1.04 7.33 -2.39 -0.02 1.02 16 44 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 45 H 0.09 2.09 8.07 -2.39 -0.02 2.07 16 Total: -1.00 -53.88 358.00 1.67 -52.21 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.98 Total: 29.20 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.90 Total: -16.63 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -7.17 Total: -98.66 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.08 Total: -3.36 kcal Total: -53.88 1.67 -52.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158569428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.762 kcal (2) G-P(sol) polarization free energy of solvation -53.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds