Wall clock time and date at job start Tue Mar 31 2020 13:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08994 * 109.47510 * 305.00071 * 3 2 1 5 5 C 1.50695 * 109.47112 * 184.99734 * 3 2 1 6 6 H 1.08008 * 120.00492 * 239.99975 * 5 3 2 7 7 C 1.37883 * 120.00022 * 60.00185 * 5 3 2 8 8 N 1.31506 * 119.99661 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00033 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47482 * 59.99806 * 9 7 5 11 11 H 1.48502 * 109.47053 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47304 * 299.99988 * 9 7 5 13 13 N 1.46505 * 109.47119 * 65.00050 * 3 2 1 14 14 C 1.39004 * 119.99977 * 275.00038 * 13 3 2 15 15 N 1.32443 * 119.69439 * 359.97438 * 14 13 3 16 16 C 1.32041 * 121.60500 * 179.97438 * 15 14 13 17 17 Cl 1.73598 * 119.58698 * 180.02562 * 16 15 14 18 18 C 1.38241 * 120.81851 * 0.02562 * 16 15 14 19 19 C 1.38773 * 119.31722 * 359.97438 * 18 16 15 20 20 C 1.38379 * 118.52049 * 359.75365 * 19 18 16 21 21 C 1.50709 * 120.43547 * 180.26368 * 20 19 18 22 22 N 1.46897 * 109.46571 * 260.25180 * 21 20 19 23 23 C 1.48528 * 111.00540 * 52.60657 * 22 21 20 24 24 C 1.54931 * 103.23176 * 159.71813 * 23 22 21 25 25 C 1.54600 * 102.92152 * 322.58315 * 24 23 22 26 26 C 1.47904 * 110.99696 * 169.99818 * 22 21 20 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 0.97000 * 120.00153 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00036 * 95.00156 * 13 3 2 34 34 H 1.07997 * 120.33763 * 179.97438 * 18 16 15 35 35 H 1.08000 * 120.73711 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46951 * 20.25126 * 21 20 19 37 37 H 1.08998 * 109.46799 * 140.25153 * 21 20 19 38 38 H 1.09003 * 110.66252 * 278.15429 * 23 22 21 39 39 H 1.09001 * 110.66740 * 41.27600 * 23 22 21 40 40 H 1.09003 * 110.72538 * 204.22809 * 24 23 22 41 41 H 1.09002 * 110.72617 * 80.94048 * 24 23 22 42 42 H 1.09000 * 110.30813 * 263.04332 * 25 24 23 43 43 H 1.08997 * 110.31096 * 140.86910 * 25 24 23 44 44 H 1.09002 * 109.91872 * 333.50883 * 26 22 21 45 45 H 1.09007 * 109.91860 * 94.60098 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8799 -1.3810 10 1 6.5967 0.1451 -0.2341 11 1 6.3979 0.2155 -2.6497 12 1 6.5006 2.2798 -1.3806 13 7 1.6525 2.0975 1.2519 14 6 0.3970 2.6822 1.3706 15 7 -0.4439 2.6440 0.3481 16 6 -1.6455 3.1867 0.4197 17 17 -2.7058 3.1055 -0.9524 18 6 -2.0696 3.8185 1.5738 19 6 -1.2175 3.8795 2.6675 20 6 0.0333 3.2967 2.5638 21 6 0.9909 3.3325 3.7270 22 7 1.9721 4.4060 3.5205 23 6 1.2961 5.6982 3.2386 24 6 2.3849 6.7484 3.5731 25 6 3.0875 6.1370 4.8070 26 6 2.7772 4.6301 4.7408 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8294 -0.0619 -2.9494 33 1 2.2720 2.1231 1.9978 34 1 -3.0539 4.2601 1.6238 35 1 -1.5254 4.3672 3.5806 36 1 0.4376 3.5180 4.6476 37 1 1.5087 2.3762 3.8008 38 1 1.0100 5.7615 2.1887 39 1 0.4268 5.8263 3.8836 40 1 1.9317 7.7077 3.8232 41 1 3.0848 6.8557 2.7444 42 1 2.6837 6.5666 5.7238 43 1 4.1631 6.3045 4.7515 44 1 2.2091 4.3290 5.6210 45 1 3.7041 4.0592 4.6843 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:40 Heat of formation + Delta-G solvation = 37.650738 kcal Electronic energy + Delta-G solvation = -26145.638415 eV Core-core repulsion = 22609.752644 eV Total energy + Delta-G solvation = -3535.885770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23924 -38.56810 -36.50623 -35.79401 -33.65185 -32.79685 -31.17423 -30.82953 -29.14610 -28.68951 -26.54681 -25.49859 -23.26395 -22.20827 -22.01386 -20.84063 -20.60151 -19.57091 -17.73155 -16.45485 -16.13005 -16.07454 -15.82346 -14.91933 -14.73670 -14.66907 -14.26510 -13.72388 -13.56958 -13.46935 -13.07386 -12.73439 -12.65524 -12.46580 -12.20221 -11.64343 -11.62517 -11.40325 -11.34374 -11.19490 -11.09613 -11.02965 -10.89100 -10.87596 -10.78121 -10.60917 -10.30114 -10.09817 -9.75683 -9.50941 -9.08658 -8.86560 -8.80267 -8.38417 -8.31146 -6.84676 -6.06580 -4.14720 1.45391 1.86937 2.22099 3.29196 3.34164 3.36038 3.96902 4.15874 4.35490 4.43641 4.62302 4.67320 4.87546 4.95895 5.09637 5.22855 5.24937 5.28182 5.46259 5.53111 5.54366 5.62616 5.73981 5.74928 5.79442 5.88845 5.99114 6.10802 6.15419 6.23392 6.43349 6.47930 6.49635 6.66303 6.81912 6.95460 7.06970 7.08019 7.24700 7.43264 7.60387 7.73902 7.83574 8.01353 8.24941 8.42933 8.78472 9.03213 9.50995 10.98603 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.008074 B = 0.005934 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.063716 B = 4717.165384 C = 7376.257401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.275 3.725 4 H 0.053 0.947 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.455 3.545 15 N -0.524 5.524 16 C 0.237 3.763 17 Cl -0.052 7.052 18 C -0.250 4.250 19 C -0.017 4.017 20 C -0.228 4.228 21 C 0.105 3.895 22 N -0.508 5.508 23 C 0.043 3.957 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.034 3.966 27 H 0.055 0.945 28 H 0.019 0.981 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.416 9.153 12.794 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.071 0.929 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.302 5.302 14 C 0.214 3.786 15 N -0.244 5.244 16 C 0.068 3.932 17 Cl -0.023 7.023 18 C -0.275 4.275 19 C -0.043 4.043 20 C -0.237 4.237 21 C -0.023 4.023 22 N -0.232 5.232 23 C -0.085 4.085 24 C -0.163 4.163 25 C -0.167 4.167 26 C -0.094 4.094 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.720 8.307 11.096 15.404 hybrid contribution 0.284 0.491 1.380 1.492 sum -6.436 8.799 12.476 16.568 Atomic orbital electron populations 1.21822 0.98446 0.97714 1.00978 1.21939 0.92560 0.99997 1.02045 1.18816 0.93992 0.88975 0.80912 0.92883 1.21203 0.90856 1.38686 1.06192 0.92205 1.24841 0.98354 0.94906 0.95426 1.69880 1.35057 1.37723 1.09353 0.86557 0.85213 0.78272 0.77329 1.20270 1.21217 1.20232 1.45645 1.10507 1.55354 1.18716 1.17959 0.86656 0.87204 0.86761 1.66702 1.03186 1.23724 1.30831 1.21186 0.89980 0.94343 0.87680 1.98373 1.62181 1.96930 1.44853 1.21134 1.02535 1.10256 0.93599 1.20939 0.91840 0.94227 0.97280 1.19888 0.97247 1.09853 0.96708 1.20891 0.91660 0.95937 0.93854 1.64901 1.21070 1.04763 1.32510 1.23139 0.95241 0.88549 1.01549 1.22490 0.98054 0.97648 0.98128 1.22374 1.01221 0.94964 0.98172 1.22891 0.98780 0.96384 0.91319 0.92604 0.96167 0.94912 0.95414 0.88320 0.92626 0.75922 0.85283 0.85522 0.94069 0.90104 0.90078 0.94100 0.91412 0.90631 0.91882 0.91103 0.94047 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.44 37.16 0.31 -2.58 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.28 6.81 2.25 -69.08 -0.16 6.66 16 4 H 0.05 1.51 7.54 -51.93 -0.39 1.12 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -14.08 5.07 -55.07 -0.28 -14.36 16 14 C 0.46 8.66 6.02 -155.01 -0.93 7.72 16 15 N -0.52 -10.48 6.39 -9.55 -0.06 -10.54 16 16 C 0.24 4.07 7.27 -17.46 -0.13 3.95 16 17 Cl -0.05 -0.82 29.10 -51.86 -1.51 -2.33 16 18 C -0.25 -3.54 9.87 -39.38 -0.39 -3.93 16 19 C -0.02 -0.22 9.12 -39.33 -0.36 -0.58 16 20 C -0.23 -3.48 4.34 -104.26 -0.45 -3.93 16 21 C 0.10 1.37 4.47 -4.97 -0.02 1.35 16 22 N -0.51 -6.74 5.39 -231.89 -1.25 -7.99 16 23 C 0.04 0.52 5.22 -1.90 -0.01 0.51 16 24 C -0.13 -1.32 7.06 -24.87 -0.18 -1.49 16 25 C -0.13 -1.24 6.93 -25.37 -0.18 -1.41 16 26 C 0.03 0.37 6.69 -2.75 -0.02 0.36 16 27 H 0.05 1.28 7.67 -51.93 -0.40 0.89 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.69 5.60 -51.93 -0.29 0.40 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.40 7.92 6.75 -40.82 -0.28 7.64 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.04 0.46 7.70 -51.93 -0.40 0.06 16 37 H 0.08 1.10 7.11 -51.93 -0.37 0.74 16 38 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 39 H 0.04 0.45 7.83 -51.93 -0.41 0.04 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.41 7.57 -51.93 -0.39 0.01 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -27.89 366.01 -12.01 -39.90 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.99 Total: 7.25 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.04 Total: -9.24 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.96 Total: -57.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.51 Total: -2.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.89 -12.01 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.556 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds