Wall clock time and date at job start Tue Mar 31 2020 13:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47201 * 2 1 4 4 H 1.09003 * 109.47535 * 304.99735 * 3 2 1 5 5 C 1.50699 * 109.47404 * 185.00032 * 3 2 1 6 6 H 1.08005 * 120.00326 * 240.00624 * 5 3 2 7 7 C 1.37885 * 119.99961 * 59.99566 * 5 3 2 8 8 N 1.31516 * 119.99808 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00131 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47366 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47284 * 210.00391 * 9 7 5 12 12 H 1.48505 * 109.47019 * 330.00280 * 9 7 5 13 13 N 1.46502 * 109.47031 * 65.00190 * 3 2 1 14 14 C 1.38408 * 119.99724 * 274.99494 * 13 3 2 15 15 N 1.32502 * 119.20837 * 0.02562 * 14 13 3 16 16 C 1.32374 * 120.71153 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 120.41847 * 179.97438 * 16 15 14 18 18 C 1.38835 * 119.16854 * 359.97438 * 16 15 14 19 19 C 1.38486 * 118.53998 * 0.02562 * 18 16 15 20 20 C 1.50708 * 120.38864 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47015 * 35.00106 * 20 19 18 22 22 C 1.52998 * 109.47074 * 180.02562 * 21 20 19 23 23 C 1.52995 * 109.47421 * 59.99705 * 22 21 20 24 24 C 1.52999 * 109.47237 * 300.00195 * 23 22 21 25 25 C 1.53001 * 109.46893 * 274.99832 * 20 19 18 26 26 N 1.32330 * 119.21806 * 0.02562 * 19 18 16 27 27 H 1.09001 * 109.46891 * 60.00065 * 1 2 3 28 28 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46999 * 299.99899 * 1 2 3 30 30 H 1.09003 * 109.46959 * 240.00121 * 2 1 3 31 31 H 1.08997 * 109.47110 * 120.00391 * 2 1 3 32 32 H 0.96996 * 119.99761 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00117 * 94.99824 * 13 3 2 34 34 H 1.07992 * 120.72946 * 179.72645 * 18 16 15 35 35 H 1.08995 * 109.46856 * 155.00164 * 20 19 18 36 36 H 1.09002 * 109.46726 * 299.99892 * 21 20 19 37 37 H 1.09002 * 109.47452 * 59.99691 * 21 20 19 38 38 H 1.08999 * 109.46677 * 299.99520 * 22 21 20 39 39 H 1.08999 * 109.46845 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47277 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47098 * 59.99765 * 23 22 21 42 42 H 1.08995 * 109.47356 * 299.99938 * 24 23 22 43 43 H 1.08999 * 109.47268 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47488 * 299.99794 * 25 20 19 45 45 H 1.09004 * 109.46985 * 60.00734 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5540 -0.3521 -0.7599 11 1 6.3836 0.9213 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4024 2.6796 1.3701 15 7 -0.4315 2.6350 0.3413 16 6 -1.6344 3.1818 0.4220 17 17 -2.7207 3.1195 -0.9308 18 6 -2.0163 3.8057 1.6020 19 6 -1.1190 3.8332 2.6564 20 6 -1.4900 4.4998 3.9561 21 6 -2.9804 4.2888 4.2301 22 6 -3.3573 4.9661 5.5493 23 6 -3.0631 6.4646 5.4555 24 6 -1.5727 6.6755 5.1815 25 6 -1.1956 5.9983 3.8629 26 7 0.0685 3.2681 2.5089 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0606 -2.9502 33 1 2.2720 2.1230 1.9978 34 1 -2.9900 4.2637 1.6939 35 1 -0.9063 4.0646 4.7672 36 1 -3.5641 4.7240 3.4189 37 1 -3.1902 3.2212 4.2965 38 1 -2.7736 4.5312 6.3606 39 1 -4.4190 4.8154 5.7447 40 1 -3.3320 6.9471 6.3952 41 1 -3.6467 6.8994 4.6441 42 1 -0.9890 6.2407 5.9928 43 1 -1.3631 7.7431 5.1143 44 1 -0.1339 6.1486 3.6677 45 1 -1.7795 6.4335 3.0517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:48 Heat of formation + Delta-G solvation = 20.418520 kcal Electronic energy + Delta-G solvation = -25456.991104 eV Core-core repulsion = 21920.358088 eV Total energy + Delta-G solvation = -3536.633015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80782 -38.62755 -36.69120 -36.15279 -33.62602 -33.01621 -31.68105 -30.94278 -30.42357 -29.27215 -26.79616 -24.45508 -23.47631 -22.89220 -22.56705 -21.41275 -19.91928 -19.58454 -17.94349 -16.98171 -16.32101 -15.50859 -15.36822 -15.12664 -14.87104 -14.50514 -14.34571 -14.23654 -13.81305 -13.68903 -12.99566 -12.77358 -12.63493 -12.48178 -12.35735 -12.00117 -11.64326 -11.44388 -11.31201 -11.29076 -11.10265 -11.00604 -10.89179 -10.72920 -10.55296 -10.49657 -10.33988 -10.27515 -10.16257 -9.84583 -9.60644 -9.51142 -9.05363 -8.69312 -8.46891 -7.27765 -6.15977 -4.25201 1.39936 1.56186 1.94641 3.23165 3.30055 3.32268 3.64211 4.19254 4.25501 4.33637 4.55046 4.63561 4.78467 4.99343 5.10452 5.15646 5.17805 5.25202 5.32190 5.33886 5.36803 5.48056 5.56604 5.67651 5.75238 5.85652 5.92961 5.97635 5.99862 6.07307 6.18294 6.30714 6.34211 6.39251 6.46258 6.64109 6.98398 7.09931 7.29241 7.32798 7.55708 7.64266 7.68372 7.88468 8.13797 8.45347 8.69305 8.98104 9.41318 10.89305 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.003416 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.193737 B = 8193.663981 C = 9307.516461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.279 3.721 4 H 0.057 0.943 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.662 5.662 14 C 0.590 3.410 15 N -0.548 5.548 16 C 0.270 3.730 17 Cl -0.034 7.034 18 C -0.301 4.301 19 C 0.237 3.763 20 C -0.034 4.034 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.107 4.107 26 N -0.581 5.581 27 H 0.056 0.944 28 H 0.022 0.978 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.894 9.363 11.933 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.291 5.291 14 C 0.233 3.767 15 N -0.274 5.274 16 C 0.092 3.908 17 Cl -0.006 7.006 18 C -0.330 4.330 19 C 0.087 3.913 20 C -0.053 4.053 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.146 4.146 26 N -0.306 5.306 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.242 0.758 34 H 0.160 0.840 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.871 8.671 11.303 19.200 hybrid contribution 0.332 0.178 -0.088 0.387 sum -12.539 8.849 11.216 19.009 Atomic orbital electron populations 1.21817 0.98466 0.97903 1.00747 1.21953 0.92569 0.99715 1.02377 1.18937 0.94270 0.89117 0.79954 0.92544 1.21211 0.90524 1.39295 1.06462 0.92018 1.24853 0.98680 0.94686 0.95271 1.69888 1.35150 1.37442 1.09298 0.86435 0.84728 0.78506 0.77383 1.20502 1.21030 1.19839 1.45332 1.09499 1.55149 1.19167 1.19281 0.87648 0.86618 0.83128 1.67448 1.03541 1.24727 1.31725 1.21593 0.89706 0.91552 0.87919 1.98394 1.59934 1.96715 1.45564 1.21798 1.04275 1.12569 0.94314 1.21132 0.87198 0.88742 0.94258 1.20091 0.96924 0.95346 0.92956 1.21645 0.94502 1.01030 0.97923 1.21523 1.01077 0.95468 0.97478 1.21559 0.96482 0.96317 1.01470 1.21517 0.96224 1.00280 0.97467 1.21515 1.01989 0.93079 0.97971 1.67787 1.20114 1.17782 1.24872 0.92496 0.95860 0.95336 0.87999 0.95093 0.92497 0.75797 0.84000 0.88949 0.91155 0.91535 0.91863 0.91838 0.92168 0.91907 0.91791 0.91854 0.91397 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.43 37.16 0.31 -2.56 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.28 6.90 2.24 -69.09 -0.15 6.75 16 4 H 0.06 1.58 7.50 -51.93 -0.39 1.19 16 5 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.26 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.66 -14.37 5.15 -56.93 -0.29 -14.66 16 14 C 0.59 12.10 6.99 -322.82 -2.26 9.84 16 15 N -0.55 -11.22 6.36 -11.02 -0.07 -11.29 16 16 C 0.27 4.67 7.33 -17.10 -0.13 4.55 16 17 Cl -0.03 -0.52 29.15 -51.86 -1.51 -2.03 16 18 C -0.30 -4.39 9.05 -39.27 -0.36 -4.75 16 19 C 0.24 3.54 5.82 -82.28 -0.48 3.06 16 20 C -0.03 -0.38 2.54 -91.77 -0.23 -0.61 16 21 C -0.11 -1.02 4.65 -26.73 -0.12 -1.14 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 24 C -0.12 -0.93 5.92 -26.75 -0.16 -1.09 16 25 C -0.11 -1.07 5.18 -26.75 -0.14 -1.21 16 26 N -0.58 -10.55 10.39 -10.17 -0.11 -10.65 16 27 H 0.06 1.29 7.65 -51.93 -0.40 0.89 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.61 5.60 -51.93 -0.29 0.32 16 30 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.41 8.26 8.65 -40.82 -0.35 7.91 16 34 H 0.14 1.65 6.43 -52.49 -0.34 1.31 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -27.65 364.81 -12.48 -40.13 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.03 Total: 6.15 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -4.57 Total: -5.09 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.16 Total: -60.23 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.65 -12.48 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.552 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds