Wall clock time and date at job start Tue Mar 31 2020 13:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47201 * 2 1 4 4 H 1.09003 * 109.47535 * 304.99735 * 3 2 1 5 5 C 1.50699 * 109.47404 * 185.00032 * 3 2 1 6 6 H 1.08005 * 120.00326 * 240.00624 * 5 3 2 7 7 C 1.37885 * 119.99961 * 59.99566 * 5 3 2 8 8 N 1.31516 * 119.99808 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00131 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47366 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47284 * 210.00391 * 9 7 5 12 12 H 1.48505 * 109.47019 * 330.00280 * 9 7 5 13 13 N 1.46502 * 109.47031 * 65.00190 * 3 2 1 14 14 C 1.38408 * 119.99724 * 274.99494 * 13 3 2 15 15 N 1.32502 * 119.20837 * 0.02562 * 14 13 3 16 16 C 1.32374 * 120.71153 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 120.41847 * 179.97438 * 16 15 14 18 18 C 1.38835 * 119.16854 * 359.97438 * 16 15 14 19 19 C 1.38486 * 118.53998 * 0.02562 * 18 16 15 20 20 C 1.50708 * 120.38864 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47015 * 35.00106 * 20 19 18 22 22 C 1.52998 * 109.47074 * 180.02562 * 21 20 19 23 23 C 1.52995 * 109.47421 * 59.99705 * 22 21 20 24 24 C 1.52999 * 109.47237 * 300.00195 * 23 22 21 25 25 C 1.53001 * 109.46893 * 274.99832 * 20 19 18 26 26 N 1.32330 * 119.21806 * 0.02562 * 19 18 16 27 27 H 1.09001 * 109.46891 * 60.00065 * 1 2 3 28 28 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46999 * 299.99899 * 1 2 3 30 30 H 1.09003 * 109.46959 * 240.00121 * 2 1 3 31 31 H 1.08997 * 109.47110 * 120.00391 * 2 1 3 32 32 H 0.96996 * 119.99761 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00117 * 94.99824 * 13 3 2 34 34 H 1.07992 * 120.72946 * 179.72645 * 18 16 15 35 35 H 1.08995 * 109.46856 * 155.00164 * 20 19 18 36 36 H 1.09002 * 109.46726 * 299.99892 * 21 20 19 37 37 H 1.09002 * 109.47452 * 59.99691 * 21 20 19 38 38 H 1.08999 * 109.46677 * 299.99520 * 22 21 20 39 39 H 1.08999 * 109.46845 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47277 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47098 * 59.99765 * 23 22 21 42 42 H 1.08995 * 109.47356 * 299.99938 * 24 23 22 43 43 H 1.08999 * 109.47268 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47488 * 299.99794 * 25 20 19 45 45 H 1.09004 * 109.46985 * 60.00734 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5540 -0.3521 -0.7599 11 1 6.3836 0.9213 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4024 2.6796 1.3701 15 7 -0.4315 2.6350 0.3413 16 6 -1.6344 3.1818 0.4220 17 17 -2.7207 3.1195 -0.9308 18 6 -2.0163 3.8057 1.6020 19 6 -1.1190 3.8332 2.6564 20 6 -1.4900 4.4998 3.9561 21 6 -2.9804 4.2888 4.2301 22 6 -3.3573 4.9661 5.5493 23 6 -3.0631 6.4646 5.4555 24 6 -1.5727 6.6755 5.1815 25 6 -1.1956 5.9983 3.8629 26 7 0.0685 3.2681 2.5089 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0606 -2.9502 33 1 2.2720 2.1230 1.9978 34 1 -2.9900 4.2637 1.6939 35 1 -0.9063 4.0646 4.7672 36 1 -3.5641 4.7240 3.4189 37 1 -3.1902 3.2212 4.2965 38 1 -2.7736 4.5312 6.3606 39 1 -4.4190 4.8154 5.7447 40 1 -3.3320 6.9471 6.3952 41 1 -3.6467 6.8994 4.6441 42 1 -0.9890 6.2407 5.9928 43 1 -1.3631 7.7431 5.1143 44 1 -0.1339 6.1486 3.6677 45 1 -1.7795 6.4335 3.0517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:48 Heat of formation + Delta-G solvation = 8.566505 kcal Electronic energy + Delta-G solvation = -25457.505046 eV Core-core repulsion = 21920.358088 eV Total energy + Delta-G solvation = -3537.146957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15903 -39.52363 -38.14864 -37.63027 -35.00329 -34.64864 -33.32520 -31.93767 -31.57603 -30.50914 -28.66294 -25.64762 -25.06160 -24.43107 -23.34159 -22.57118 -21.41247 -20.62837 -19.48641 -18.39702 -18.01985 -16.87295 -16.73071 -16.57537 -16.21391 -15.86743 -15.54335 -15.00842 -14.99180 -14.72706 -14.63212 -14.45166 -13.65922 -13.63404 -13.36475 -13.20768 -13.16152 -13.03453 -12.87599 -12.68887 -12.51481 -12.21918 -12.10967 -12.08286 -11.99688 -11.75517 -11.61320 -11.40946 -11.29441 -11.12931 -11.11321 -10.89646 -10.80528 -10.48691 -10.08596 -8.86547 -8.18148 -6.34538 0.03860 0.22311 0.63401 1.42724 1.43109 1.53382 2.11328 2.43588 2.81280 3.10406 3.12378 3.69677 3.79115 3.88327 3.93383 4.19631 4.30599 4.35376 4.40356 4.47114 4.51019 4.54011 4.60144 4.67334 4.68091 4.74024 4.79701 4.99560 5.05919 5.19300 5.21315 5.26861 5.28251 5.31998 5.32677 5.42640 5.45276 5.48403 5.55842 5.62806 5.67291 5.80762 6.02216 6.02398 6.23363 6.71668 6.80022 7.30978 7.46382 8.86820 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.003416 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.193737 B = 8193.663981 C = 9307.516461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C 0.295 3.705 4 H 0.017 0.983 5 C -0.554 4.554 6 H 0.063 0.937 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.674 5.674 14 C 0.576 3.424 15 N -0.582 5.582 16 C 0.250 3.750 17 Cl -0.019 7.019 18 C -0.278 4.278 19 C 0.232 3.768 20 C -0.029 4.029 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.104 4.104 26 N -0.589 5.589 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 10.560 13.556 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.159 4.159 3 C 0.192 3.808 4 H 0.035 0.965 5 C -0.592 4.592 6 H 0.081 0.919 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.306 5.306 14 C 0.219 3.781 15 N -0.308 5.308 16 C 0.074 3.926 17 Cl 0.009 6.991 18 C -0.305 4.305 19 C 0.083 3.917 20 C -0.049 4.049 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.143 4.143 26 N -0.313 5.313 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.196 0.804 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.391 9.902 12.948 21.744 hybrid contribution 0.638 -0.097 -0.557 0.852 sum -13.754 9.804 12.391 20.948 Atomic orbital electron populations 1.21606 0.96714 0.98671 1.00081 1.21789 0.94034 0.99139 1.00891 1.18436 0.93270 0.88978 0.80121 0.96486 1.21538 0.91620 1.39320 1.06714 0.91894 1.25656 1.03030 0.94273 0.94911 1.70019 1.36859 1.38035 1.09718 0.85423 0.79422 0.78691 0.77267 1.19757 1.20850 1.19393 1.44940 1.10621 1.56746 1.18268 1.19314 0.87379 0.87378 0.84017 1.67383 1.04907 1.26209 1.32345 1.22003 0.89270 0.91924 0.89369 1.98394 1.58968 1.96652 1.45038 1.22196 1.05292 1.10265 0.92758 1.21905 0.86106 0.87721 0.95948 1.20219 0.98569 0.95589 0.90498 1.21655 0.92534 1.01191 0.99395 1.21514 1.01954 0.95490 0.96270 1.21559 0.95502 0.96131 1.02392 1.21501 0.97146 1.00492 0.95990 1.21501 1.00905 0.92309 0.99553 1.67836 1.21667 1.17899 1.23941 0.93828 0.94194 0.95230 0.90567 0.95194 0.92466 0.75464 0.80449 0.89503 0.90158 0.91928 0.91955 0.90376 0.90868 0.91364 0.91876 0.90989 0.93331 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.02 8.43 71.98 0.61 -4.41 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.30 15.19 2.24 44.24 0.10 15.29 16 4 H 0.02 1.01 7.50 -2.39 -0.02 1.00 16 5 C -0.55 -29.93 8.73 25.60 0.22 -29.71 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -51.40 11.29 21.45 0.24 -51.16 16 9 Si 0.97 42.69 29.54 68.60 2.03 44.71 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.67 -30.26 5.15 -334.03 -1.72 -31.98 16 14 C 0.58 24.08 6.99 261.49 1.83 25.91 16 15 N -0.58 -24.19 6.36 -188.78 -1.20 -25.40 16 16 C 0.25 8.48 7.33 84.75 0.62 9.10 16 17 Cl -0.02 -0.56 29.15 -2.72 -0.08 -0.64 16 18 C -0.28 -7.59 9.05 22.47 0.20 -7.39 16 19 C 0.23 6.66 5.82 42.55 0.25 6.91 16 20 C -0.03 -0.60 2.54 -11.54 -0.03 -0.63 16 21 C -0.11 -1.65 4.65 30.59 0.14 -1.51 16 22 C -0.11 -1.31 5.92 30.59 0.18 -1.13 16 23 C -0.12 -1.26 5.92 30.59 0.18 -1.07 16 24 C -0.11 -1.52 5.92 30.58 0.18 -1.34 16 25 C -0.10 -1.90 5.18 30.58 0.16 -1.74 16 26 N -0.59 -21.38 10.39 -186.09 -1.93 -23.32 16 27 H 0.04 2.02 7.65 -2.39 -0.02 2.00 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.03 1.28 5.60 -2.39 -0.01 1.27 16 30 H 0.08 4.19 5.95 -2.39 -0.01 4.17 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.41 17.25 8.65 -92.71 -0.80 16.44 16 34 H 0.18 3.50 6.43 -2.91 -0.02 3.48 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.05 6.57 -2.39 -0.02 1.03 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -61.19 364.81 2.79 -58.40 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.19 Total: 25.19 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.26 Total: 4.18 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -4.61 Total: -131.85 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -61.19 2.79 -58.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.968 kcal (2) G-P(sol) polarization free energy of solvation -61.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds