Wall clock time and date at job start Tue Mar 31 2020 14:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.46890 * 2 1 4 4 C 1.46896 * 111.00000 * 70.83426 * 3 2 1 5 5 C 1.50692 * 109.47609 * 76.07986 * 4 3 2 6 6 H 1.08003 * 120.00266 * 4.66284 * 5 4 3 7 7 C 1.37887 * 120.00286 * 184.66740 * 5 4 3 8 8 N 1.31507 * 119.99653 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99954 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46928 * 59.99973 * 9 7 5 11 11 H 1.48503 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47136 * 299.99960 * 9 7 5 13 13 C 1.38995 * 111.00162 * 306.87123 * 3 2 1 14 14 N 1.32445 * 119.69444 * 83.67746 * 13 3 2 15 15 C 1.32035 * 121.60760 * 179.71061 * 14 13 3 16 16 Cl 1.73597 * 119.59119 * 180.30558 * 15 14 13 17 17 C 1.38244 * 120.81895 * 0.56287 * 15 14 13 18 18 C 1.38773 * 119.31584 * 359.72459 * 17 15 14 19 19 C 1.38380 * 118.52170 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.43573 * 180.02562 * 19 18 17 21 21 N 1.46902 * 109.47395 * 263.59742 * 20 19 18 22 22 C 1.48526 * 111.00108 * 52.60342 * 21 20 19 23 23 C 1.54935 * 103.22905 * 159.71848 * 22 21 20 24 24 C 1.54597 * 102.92295 * 322.58967 * 23 22 21 25 25 C 1.47899 * 110.99947 * 170.00353 * 21 20 19 26 26 H 1.09002 * 109.47326 * 174.98425 * 1 2 3 27 27 H 1.08997 * 109.47132 * 54.98699 * 1 2 3 28 28 H 1.08996 * 109.47008 * 294.98904 * 1 2 3 29 29 H 1.08997 * 109.47323 * 119.99805 * 2 1 3 30 30 H 1.09004 * 109.47225 * 240.00031 * 2 1 3 31 31 H 1.09000 * 109.47143 * 196.08435 * 4 3 2 32 32 H 1.09005 * 109.47193 * 316.07634 * 4 3 2 33 33 H 0.97002 * 119.99791 * 180.02562 * 8 7 5 34 34 H 1.08000 * 120.33875 * 179.74393 * 17 15 14 35 35 H 1.08002 * 120.73997 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47275 * 23.59982 * 20 19 18 37 37 H 1.09003 * 109.47351 * 143.59729 * 20 19 18 38 38 H 1.08995 * 110.67172 * 278.15743 * 22 21 20 39 39 H 1.09001 * 110.66513 * 41.28748 * 22 21 20 40 40 H 1.09000 * 110.72959 * 204.22746 * 23 22 21 41 41 H 1.09003 * 110.72157 * 80.94345 * 23 22 21 42 42 H 1.08999 * 110.30475 * 263.03668 * 24 23 22 43 43 H 1.08999 * 110.31029 * 140.87300 * 24 23 22 44 44 H 1.09000 * 109.91941 * 333.50290 * 25 21 20 45 45 H 1.08996 * 109.92412 * 94.60415 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7706 2.0314 1.2954 5 6 2.7692 1.5309 2.3068 6 1 3.5606 0.8633 1.9997 7 6 2.6726 1.9252 3.6246 8 7 1.7091 2.7385 3.9985 9 14 3.9101 1.3042 4.8785 10 1 5.2760 1.7264 4.4769 11 1 3.5896 1.8712 6.2131 12 1 3.8489 -0.1782 4.9422 13 6 1.4515 2.1142 -1.0381 14 7 0.2558 2.6608 -0.8783 15 6 -0.3166 3.3656 -1.8369 16 17 -1.8823 4.0656 -1.5681 17 6 0.3131 3.5486 -3.0539 18 6 1.5648 2.9868 -3.2625 19 6 2.1416 2.2588 -2.2367 20 6 3.4995 1.6306 -2.4164 21 7 3.3403 0.2244 -2.8104 22 6 2.4428 0.0997 -3.9873 23 6 2.8046 -1.2924 -4.5632 24 6 4.3341 -1.3674 -4.3511 25 6 4.6341 -0.3593 -3.2263 26 1 -0.3634 -1.0237 -0.0898 27 1 -0.3633 0.5896 -0.8417 28 1 -0.3633 0.4341 0.9314 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8722 3.1113 1.1881 32 1 0.7616 1.7932 1.6323 33 1 1.6414 3.0162 4.9255 34 1 -0.1640 4.1230 -3.8341 35 1 2.0777 3.1156 -4.2042 36 1 4.0477 2.1654 -3.1920 37 1 4.0519 1.6847 -1.4782 38 1 1.3978 0.1287 -3.6790 39 1 2.6521 0.8834 -4.7153 40 1 2.5591 -1.3468 -5.6238 41 1 2.2991 -2.0826 -4.0082 42 1 4.8570 -1.0824 -5.2641 43 1 4.6249 -2.3725 -4.0458 44 1 5.2934 0.4255 -3.5972 45 1 5.1005 -0.8678 -2.3826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165049245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:33 Heat of formation + Delta-G solvation = 51.798275 kcal Electronic energy + Delta-G solvation = -26358.060650 eV Core-core repulsion = 22822.788363 eV Total energy + Delta-G solvation = -3535.272287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58049 -38.64639 -36.93968 -36.08280 -33.62421 -32.61476 -31.43538 -30.23166 -29.12861 -28.73838 -26.53786 -25.50491 -23.19002 -22.97065 -21.98767 -20.84897 -20.75267 -19.97690 -16.88216 -16.65948 -16.08324 -16.03617 -15.94609 -15.18699 -14.94879 -14.43715 -14.20590 -13.83159 -13.49619 -13.40402 -13.27884 -13.09205 -12.71623 -12.28326 -12.21608 -11.80465 -11.63831 -11.42630 -11.40720 -11.28723 -11.12350 -11.08254 -11.01455 -10.97408 -10.74773 -10.64618 -10.51081 -10.14438 -9.94384 -9.53811 -9.36130 -9.10170 -8.52054 -8.38228 -8.24057 -7.46153 -5.96193 -3.98559 1.18137 1.41902 2.08122 3.36605 3.40785 3.43178 3.77390 4.21601 4.38195 4.57514 4.60501 4.64372 4.79390 4.89693 5.05189 5.10601 5.21975 5.28611 5.38339 5.44354 5.47863 5.57319 5.66370 5.71006 5.74880 5.89042 5.95569 5.98364 6.00440 6.05121 6.13125 6.13596 6.20086 6.36201 6.51044 6.63201 6.76829 6.96654 7.01634 7.12541 7.30114 7.53389 7.82535 8.03858 8.13688 8.25725 8.57243 9.09078 9.64563 11.13838 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.005569 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.315208 B = 5027.026152 C = 7381.680424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 N -0.475 5.475 4 C 0.199 3.801 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.364 3.636 14 N -0.495 5.495 15 C 0.190 3.810 16 Cl -0.050 7.050 17 C -0.183 4.183 18 C -0.058 4.058 19 C -0.125 4.125 20 C 0.105 3.895 21 N -0.500 5.500 22 C 0.035 3.965 23 C -0.123 4.123 24 C -0.129 4.129 25 C 0.037 3.963 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -3.772 -19.668 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.059 4.059 3 N -0.197 5.197 4 C 0.075 3.925 5 C -0.548 4.548 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.134 3.866 14 N -0.210 5.210 15 C 0.023 3.977 16 Cl -0.021 7.021 17 C -0.204 4.204 18 C -0.085 4.085 19 C -0.130 4.130 20 C -0.023 4.023 21 N -0.224 5.224 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.168 4.168 25 C -0.091 4.091 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.437 -4.039 -18.246 18.693 hybrid contribution 0.253 0.658 -0.392 0.806 sum 0.690 -3.381 -18.639 18.955 Atomic orbital electron populations 1.22434 0.98432 1.00275 1.02766 1.22075 0.92353 0.88107 1.03317 1.60414 1.52102 1.02245 1.04895 1.19771 0.97024 0.93749 0.81991 1.21098 1.12610 1.28890 0.92162 0.91830 1.24968 0.95773 0.95323 0.98368 1.69973 1.31921 1.34062 1.17404 0.86583 0.81585 0.79032 0.80297 1.20278 1.21462 1.20255 1.20014 0.84734 0.90488 0.91354 1.67548 1.11295 1.09780 1.32374 1.21521 0.89152 0.95942 0.91039 1.98381 1.25093 1.81613 1.97057 1.21550 0.96765 1.04880 0.97253 1.21291 0.93938 0.94942 0.98342 1.20426 0.97994 1.00689 0.93861 1.21008 0.92523 0.86774 1.02000 1.64855 1.09201 1.16047 1.32253 1.23228 0.98482 0.96080 0.91515 1.22468 0.95733 0.97629 1.00322 1.22386 0.96371 0.99902 0.98102 1.22864 0.91544 0.96983 0.97734 0.93587 0.93190 0.91767 0.89550 0.90241 0.96100 0.96308 0.92922 0.84531 0.84673 0.94591 0.87528 0.90490 0.94155 0.91503 0.90760 0.91902 0.91112 0.93988 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 9.02 37.16 0.34 -3.10 16 2 C 0.07 1.32 6.01 -3.82 -0.02 1.29 16 3 N -0.48 -10.16 3.69 -174.58 -0.64 -10.81 16 4 C 0.20 5.24 4.01 -4.98 -0.02 5.22 16 5 C -0.51 -14.20 8.57 -34.44 -0.30 -14.49 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.36 7.01 4.60 -155.01 -0.71 6.30 16 14 N -0.50 -9.90 7.49 -9.55 -0.07 -9.97 16 15 C 0.19 3.20 7.27 -17.46 -0.13 3.07 16 16 Cl -0.05 -0.77 29.10 -51.86 -1.51 -2.28 16 17 C -0.18 -2.46 9.87 -39.38 -0.39 -2.85 16 18 C -0.06 -0.75 8.88 -39.33 -0.35 -1.10 16 19 C -0.13 -1.94 4.43 -104.26 -0.46 -2.40 16 20 C 0.10 1.45 4.86 -4.98 -0.02 1.43 16 21 N -0.50 -6.35 4.40 -231.90 -1.02 -7.37 16 22 C 0.03 0.38 5.11 -1.90 -0.01 0.37 16 23 C -0.12 -1.13 7.06 -24.87 -0.18 -1.31 16 24 C -0.13 -1.13 6.93 -25.37 -0.18 -1.31 16 25 C 0.04 0.39 6.70 -2.75 -0.02 0.37 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.96 5.84 -51.93 -0.30 0.66 16 28 H 0.06 1.40 6.67 -51.93 -0.35 1.05 16 29 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 30 H 0.08 1.41 7.13 -51.93 -0.37 1.04 16 31 H 0.02 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.02 0.55 6.30 -51.93 -0.33 0.22 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.14 1.28 7.94 -52.49 -0.42 0.87 16 36 H 0.04 0.43 7.72 -51.93 -0.40 0.03 16 37 H 0.11 1.75 7.69 -51.93 -0.40 1.35 16 38 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 39 H 0.04 0.40 7.63 -51.93 -0.40 0.01 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.42 7.57 -51.93 -0.39 0.03 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -30.36 368.37 -11.59 -41.95 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.06 Total: -0.58 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.54 Total: -6.96 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.00 Total: -54.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.51 Total: -2.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.36 -11.59 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165049245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.748 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds