Wall clock time and date at job start Tue Mar 31 2020 14:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.46890 * 2 1 4 4 C 1.46896 * 111.00000 * 70.83426 * 3 2 1 5 5 C 1.50692 * 109.47609 * 76.07986 * 4 3 2 6 6 H 1.08003 * 120.00266 * 4.66284 * 5 4 3 7 7 C 1.37887 * 120.00286 * 184.66740 * 5 4 3 8 8 N 1.31507 * 119.99653 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99954 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46928 * 59.99973 * 9 7 5 11 11 H 1.48503 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47136 * 299.99960 * 9 7 5 13 13 C 1.38995 * 111.00162 * 306.87123 * 3 2 1 14 14 N 1.32445 * 119.69444 * 83.67746 * 13 3 2 15 15 C 1.32035 * 121.60760 * 179.71061 * 14 13 3 16 16 Cl 1.73597 * 119.59119 * 180.30558 * 15 14 13 17 17 C 1.38244 * 120.81895 * 0.56287 * 15 14 13 18 18 C 1.38773 * 119.31584 * 359.72459 * 17 15 14 19 19 C 1.38380 * 118.52170 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.43573 * 180.02562 * 19 18 17 21 21 N 1.46902 * 109.47395 * 263.59742 * 20 19 18 22 22 C 1.48526 * 111.00108 * 52.60342 * 21 20 19 23 23 C 1.54935 * 103.22905 * 159.71848 * 22 21 20 24 24 C 1.54597 * 102.92295 * 322.58967 * 23 22 21 25 25 C 1.47899 * 110.99947 * 170.00353 * 21 20 19 26 26 H 1.09002 * 109.47326 * 174.98425 * 1 2 3 27 27 H 1.08997 * 109.47132 * 54.98699 * 1 2 3 28 28 H 1.08996 * 109.47008 * 294.98904 * 1 2 3 29 29 H 1.08997 * 109.47323 * 119.99805 * 2 1 3 30 30 H 1.09004 * 109.47225 * 240.00031 * 2 1 3 31 31 H 1.09000 * 109.47143 * 196.08435 * 4 3 2 32 32 H 1.09005 * 109.47193 * 316.07634 * 4 3 2 33 33 H 0.97002 * 119.99791 * 180.02562 * 8 7 5 34 34 H 1.08000 * 120.33875 * 179.74393 * 17 15 14 35 35 H 1.08002 * 120.73997 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47275 * 23.59982 * 20 19 18 37 37 H 1.09003 * 109.47351 * 143.59729 * 20 19 18 38 38 H 1.08995 * 110.67172 * 278.15743 * 22 21 20 39 39 H 1.09001 * 110.66513 * 41.28748 * 22 21 20 40 40 H 1.09000 * 110.72959 * 204.22746 * 23 22 21 41 41 H 1.09003 * 110.72157 * 80.94345 * 23 22 21 42 42 H 1.08999 * 110.30475 * 263.03668 * 24 23 22 43 43 H 1.08999 * 110.31029 * 140.87300 * 24 23 22 44 44 H 1.09000 * 109.91941 * 333.50290 * 25 21 20 45 45 H 1.08996 * 109.92412 * 94.60415 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7706 2.0314 1.2954 5 6 2.7692 1.5309 2.3068 6 1 3.5606 0.8633 1.9997 7 6 2.6726 1.9252 3.6246 8 7 1.7091 2.7385 3.9985 9 14 3.9101 1.3042 4.8785 10 1 5.2760 1.7264 4.4769 11 1 3.5896 1.8712 6.2131 12 1 3.8489 -0.1782 4.9422 13 6 1.4515 2.1142 -1.0381 14 7 0.2558 2.6608 -0.8783 15 6 -0.3166 3.3656 -1.8369 16 17 -1.8823 4.0656 -1.5681 17 6 0.3131 3.5486 -3.0539 18 6 1.5648 2.9868 -3.2625 19 6 2.1416 2.2588 -2.2367 20 6 3.4995 1.6306 -2.4164 21 7 3.3403 0.2244 -2.8104 22 6 2.4428 0.0997 -3.9873 23 6 2.8046 -1.2924 -4.5632 24 6 4.3341 -1.3674 -4.3511 25 6 4.6341 -0.3593 -3.2263 26 1 -0.3634 -1.0237 -0.0898 27 1 -0.3633 0.5896 -0.8417 28 1 -0.3633 0.4341 0.9314 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8722 3.1113 1.1881 32 1 0.7616 1.7932 1.6323 33 1 1.6414 3.0162 4.9255 34 1 -0.1640 4.1230 -3.8341 35 1 2.0777 3.1156 -4.2042 36 1 4.0477 2.1654 -3.1920 37 1 4.0519 1.6847 -1.4782 38 1 1.3978 0.1287 -3.6790 39 1 2.6521 0.8834 -4.7153 40 1 2.5591 -1.3468 -5.6238 41 1 2.2991 -2.0826 -4.0082 42 1 4.8570 -1.0824 -5.2641 43 1 4.6249 -2.3725 -4.0458 44 1 5.2934 0.4255 -3.5972 45 1 5.1005 -0.8678 -2.3826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165049245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:32 Heat of formation + Delta-G solvation = 33.726839 kcal Electronic energy + Delta-G solvation = -26358.844287 eV Core-core repulsion = 22822.788363 eV Total energy + Delta-G solvation = -3536.055923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88159 -39.55648 -38.43151 -37.39398 -34.77672 -34.68942 -32.64268 -31.52505 -30.70718 -29.61041 -28.37827 -26.59919 -25.00557 -24.45579 -23.17118 -21.99049 -21.58219 -21.31448 -18.50508 -18.05650 -17.87233 -17.08985 -16.98229 -16.67057 -16.30471 -15.96767 -15.64554 -15.07053 -14.76325 -14.62430 -14.50806 -14.28813 -13.99237 -13.68769 -13.58695 -13.23173 -13.12550 -12.86756 -12.73889 -12.55074 -12.51772 -12.36397 -12.28416 -12.20593 -12.06819 -12.06371 -11.90522 -11.64265 -11.42407 -11.33012 -10.79606 -10.59264 -10.49015 -9.82173 -9.28425 -9.04249 -8.16677 -6.28355 -0.05696 0.23607 0.85061 1.41200 1.45128 1.52873 2.40849 2.55506 3.04595 3.15017 3.27878 3.58464 3.78840 3.87640 3.91777 4.02586 4.10671 4.22235 4.26976 4.37993 4.40732 4.45240 4.54450 4.63342 4.72094 4.82459 4.85652 4.95763 4.98288 4.99603 5.03882 5.08201 5.14750 5.17920 5.20108 5.29964 5.32369 5.42346 5.45448 5.54159 5.70203 6.07942 6.11843 6.17417 6.20192 6.71124 6.80551 6.94215 7.40908 8.93647 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.005569 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.315208 B = 5027.026152 C = 7381.680424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 N -0.473 5.473 4 C 0.227 3.773 5 C -0.521 4.521 6 H 0.066 0.934 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.324 3.676 14 N -0.538 5.538 15 C 0.164 3.836 16 Cl -0.049 7.049 17 C -0.160 4.160 18 C -0.043 4.043 19 C -0.119 4.119 20 C 0.111 3.889 21 N -0.521 5.521 22 C 0.036 3.964 23 C -0.120 4.120 24 C -0.122 4.122 25 C 0.035 3.965 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.101 0.899 31 H -0.021 1.021 32 H -0.019 1.019 33 H 0.262 0.738 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -4.352 -22.864 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.052 4.052 3 N -0.193 5.193 4 C 0.102 3.898 5 C -0.559 4.559 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.096 3.904 14 N -0.254 5.254 15 C -0.002 4.002 16 Cl -0.021 7.021 17 C -0.181 4.181 18 C -0.069 4.069 19 C -0.123 4.123 20 C -0.017 4.017 21 N -0.246 5.246 22 C -0.091 4.091 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.093 4.093 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.119 0.881 31 H -0.003 1.003 32 H -0.001 1.001 33 H 0.071 0.929 34 H 0.193 0.807 35 H 0.201 0.799 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.937 -4.630 -21.477 22.055 hybrid contribution -0.283 0.880 0.479 1.041 sum 1.654 -3.750 -20.998 21.394 Atomic orbital electron populations 1.22265 0.98153 1.01375 1.00598 1.22032 0.92477 0.87582 1.03106 1.60296 1.53067 1.02784 1.03188 1.19167 0.94589 0.91465 0.84599 1.21419 1.12819 1.28734 0.92963 0.91554 1.25935 0.97735 0.95283 1.00648 1.70135 1.34004 1.35512 1.17893 0.85421 0.79025 0.78860 0.77198 1.19136 1.21136 1.19036 1.20062 0.85690 0.92397 0.92292 1.67287 1.12315 1.11271 1.34505 1.21882 0.89680 0.96721 0.91907 1.98372 1.25006 1.81512 1.97190 1.22002 0.96490 1.03220 0.96340 1.21781 0.93401 0.92688 0.99074 1.20632 0.98298 1.00439 0.92946 1.20879 0.91319 0.88031 1.01466 1.64751 1.10680 1.15223 1.33925 1.23223 0.97009 0.97766 0.91133 1.22456 0.95855 0.96175 1.01284 1.22360 0.96174 0.99496 0.98021 1.22891 0.90733 0.97611 0.98044 0.91001 0.93265 0.95558 0.91717 0.88053 1.00252 1.00092 0.92882 0.80652 0.79857 0.91717 0.90819 0.92333 0.92285 0.89428 0.91845 0.90046 0.90812 0.92973 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.60 9.02 71.98 0.65 -5.95 16 2 C 0.07 3.02 6.01 86.30 0.52 3.53 16 3 N -0.47 -21.27 3.69 -706.24 -2.61 -23.87 16 4 C 0.23 12.86 4.01 85.56 0.34 13.20 16 5 C -0.52 -30.41 8.57 25.60 0.22 -30.19 16 6 H 0.07 3.75 7.81 -2.91 -0.02 3.72 16 7 C 0.00 0.11 5.46 84.66 0.46 0.57 16 8 N -0.94 -58.88 13.29 21.45 0.28 -58.59 16 9 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.32 12.84 4.60 133.04 0.61 13.46 16 14 N -0.54 -22.35 7.49 -184.14 -1.38 -23.73 16 15 C 0.16 5.47 7.27 84.66 0.62 6.09 16 16 Cl -0.05 -1.52 29.10 -2.72 -0.08 -1.60 16 17 C -0.16 -3.81 9.87 22.40 0.22 -3.59 16 18 C -0.04 -0.94 8.88 22.43 0.20 -0.74 16 19 C -0.12 -3.52 4.43 -19.63 -0.09 -3.60 16 20 C 0.11 2.90 4.86 85.56 0.42 3.32 16 21 N -0.52 -12.30 4.40 -887.60 -3.91 -16.21 16 22 C 0.04 0.68 5.11 86.65 0.44 1.13 16 23 C -0.12 -1.83 7.06 31.80 0.22 -1.60 16 24 C -0.12 -1.75 6.93 31.47 0.22 -1.54 16 25 C 0.03 0.67 6.70 86.45 0.58 1.24 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 1.96 5.84 -2.39 -0.01 1.95 16 28 H 0.03 1.21 6.67 -2.39 -0.02 1.20 16 29 H 0.06 2.87 7.44 -2.39 -0.02 2.85 16 30 H 0.10 3.66 7.13 -2.39 -0.02 3.64 16 31 H -0.02 -1.31 7.90 -2.39 -0.02 -1.33 16 32 H -0.02 -1.19 6.30 -2.38 -0.02 -1.20 16 33 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.18 2.30 7.94 -2.91 -0.02 2.27 16 36 H 0.06 1.30 7.72 -2.39 -0.02 1.28 16 37 H 0.07 2.43 7.69 -2.39 -0.02 2.41 16 38 H 0.06 1.33 7.90 -2.39 -0.02 1.31 16 39 H 0.06 0.90 7.63 -2.39 -0.02 0.88 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 0.89 7.57 -2.39 -0.02 0.87 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.75 368.37 0.94 -70.81 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.97 Total: 10.42 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.63 Total: -4.67 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -7.61 Total: -122.41 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -71.75 0.94 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165049245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.537 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds