Wall clock time and date at job start Tue Mar 31 2020 14:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46901 * 109.47135 * 2 1 4 4 C 1.46839 * 110.99972 * 169.99742 * 3 2 1 5 5 C 1.53036 * 109.52571 * 174.15883 * 4 3 2 6 6 C 1.53126 * 109.27493 * 59.18004 * 5 4 3 7 7 N 1.46904 * 109.51944 * 182.44102 * 6 5 4 8 8 C 1.46899 * 110.99848 * 66.05054 * 7 6 5 9 9 C 1.38415 * 110.99650 * 190.00399 * 7 6 5 10 10 N 1.32753 * 119.43470 * 293.68919 * 9 7 6 11 11 C 1.31466 * 121.74075 * 179.74919 * 10 9 7 12 12 C 1.40789 * 120.38663 * 0.52781 * 11 10 9 13 13 C 1.41202 * 120.56383 * 179.75924 * 12 11 10 14 14 H 1.08001 * 120.00076 * 20.33261 * 13 12 11 15 15 C 1.39859 * 119.99889 * 200.32225 * 13 12 11 16 16 N 1.30899 * 120.00400 * 21.74637 * 15 13 12 17 17 Si 1.86808 * 120.00098 * 201.74378 * 15 13 12 18 18 H 1.48501 * 109.47022 * 90.00266 * 17 15 13 19 19 H 1.48494 * 109.47190 * 210.00354 * 17 15 13 20 20 H 1.48498 * 109.46852 * 330.00401 * 17 15 13 21 21 C 1.41282 * 118.87090 * 359.73835 * 12 11 10 22 22 C 1.36668 * 118.40084 * 0.02562 * 21 12 11 23 23 Cl 1.73602 * 120.26275 * 179.97438 * 22 21 12 24 24 C 1.53112 * 109.15961 * 302.34912 * 6 5 4 25 25 C 1.46853 * 110.99845 * 45.79141 * 3 2 1 26 26 H 1.08996 * 109.46801 * 59.99938 * 1 2 3 27 27 H 1.09003 * 109.46846 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46623 * 300.00088 * 1 2 3 29 29 H 1.08993 * 109.46903 * 239.99647 * 2 1 3 30 30 H 1.09005 * 109.46789 * 119.99791 * 2 1 3 31 31 H 1.09000 * 109.46263 * 54.14482 * 4 3 2 32 32 H 1.09001 * 109.46901 * 294.17668 * 4 3 2 33 33 H 1.08995 * 109.50702 * 179.11781 * 5 4 3 34 34 H 1.08998 * 109.50691 * 299.24288 * 5 4 3 35 35 H 1.08998 * 109.51893 * 62.25482 * 6 5 4 36 36 H 1.08999 * 109.47278 * 63.03028 * 8 7 6 37 37 H 1.09001 * 109.46572 * 183.02508 * 8 7 6 38 38 H 1.09000 * 109.47224 * 303.02520 * 8 7 6 39 39 H 1.07997 * 119.80382 * 180.24308 * 11 10 9 40 40 H 0.97004 * 120.00620 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.79830 * 180.02562 * 21 12 11 42 42 H 1.09007 * 109.50038 * 177.59728 * 24 6 5 43 43 H 1.08998 * 109.50654 * 297.70520 * 24 6 5 44 44 H 1.08998 * 109.46249 * 65.82083 * 25 3 2 45 45 H 1.09005 * 109.45072 * 305.84931 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4680 1.4311 0.2381 5 6 3.9656 2.8704 0.0872 6 6 3.2354 3.7657 1.0922 7 7 3.6664 5.1585 0.9125 8 6 3.2377 5.6779 -0.3931 9 6 3.2010 5.9585 1.9417 10 7 1.8960 6.1675 2.0665 11 6 1.4043 6.9150 3.0297 12 6 2.2616 7.5313 3.9611 13 6 1.7379 8.3391 4.9940 14 1 0.7033 8.2377 5.2869 15 6 2.5590 9.2703 5.6380 16 7 3.6426 9.7064 5.0473 17 14 2.1092 9.8918 7.3413 18 1 2.7239 9.0118 8.3676 19 1 2.6136 11.2780 7.5116 20 1 0.6327 9.8793 7.4988 21 6 3.6548 7.3274 3.8448 22 6 4.1135 6.5374 2.8283 23 17 5.8160 6.2549 2.6399 24 6 1.7265 3.6620 0.8540 25 6 1.2939 2.1998 0.9827 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.9755 0.7936 -0.4858 32 1 3.6818 1.0768 1.2465 33 1 5.0378 2.9068 0.2794 34 1 3.7646 3.2207 -0.9252 35 1 3.4674 3.4396 2.1061 36 1 2.1488 5.6871 -0.4407 37 1 3.6156 6.6921 -0.5224 38 1 3.6306 5.0399 -1.1847 39 1 0.3368 7.0610 3.1042 40 1 4.2119 10.3526 5.4938 41 1 4.3407 7.7848 4.5425 42 1 1.1991 4.2641 1.5940 43 1 1.4902 4.0248 -0.1463 44 1 1.5178 1.8418 1.9876 45 1 0.2223 2.1205 0.7994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165069977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:07 Heat of formation + Delta-G solvation = 23.005707 kcal Electronic energy + Delta-G solvation = -25837.825722 eV Core-core repulsion = 22301.304896 eV Total energy + Delta-G solvation = -3536.520827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30324 -39.87953 -37.79187 -37.11574 -35.81778 -33.81975 -32.42307 -31.78877 -31.31261 -29.89260 -27.93525 -26.41257 -24.99014 -24.02708 -23.54445 -22.56793 -21.69674 -20.25762 -19.44133 -17.94117 -17.36861 -17.32112 -16.84629 -16.07148 -15.97791 -15.95330 -15.59492 -15.08015 -14.86487 -14.52715 -14.34574 -14.24795 -13.92161 -13.77148 -13.48438 -13.34202 -13.14065 -12.96875 -12.71262 -12.64838 -12.52900 -12.44938 -12.39390 -12.08973 -12.01236 -11.95827 -11.83385 -11.58742 -11.35103 -11.32825 -11.18315 -10.09472 -10.07141 -9.43006 -9.27103 -9.18431 -8.79206 -6.49068 0.57397 0.88667 1.38811 1.49069 1.53266 1.56086 2.14387 2.55783 2.96273 3.07299 3.51625 3.87453 3.92212 4.14743 4.16159 4.22158 4.28465 4.37303 4.46959 4.51807 4.59640 4.65030 4.66830 4.67850 4.72380 4.78807 4.87265 4.92389 4.97502 5.00456 5.05235 5.08903 5.12600 5.14473 5.23140 5.26990 5.32330 5.41740 5.52776 5.72946 5.84732 6.14795 6.17591 6.25460 6.27286 6.52153 6.64141 6.83851 7.53185 8.11463 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003535 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.514506 B = 7919.710324 C = 8843.211354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 N -0.544 5.544 4 C 0.062 3.938 5 C -0.097 4.097 6 C 0.098 3.902 7 N -0.463 5.463 8 C 0.038 3.962 9 C 0.135 3.865 10 N -0.460 5.460 11 C -0.031 4.031 12 C 0.051 3.949 13 C -0.462 4.462 14 H 0.096 0.904 15 C 0.038 3.962 16 N -0.801 5.801 17 Si 0.987 3.013 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.252 1.252 21 C -0.161 4.161 22 C -0.020 4.020 23 Cl -0.080 7.080 24 C -0.136 4.136 25 C 0.062 3.938 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.143 0.857 40 H 0.297 0.703 41 H 0.124 0.876 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.017 0.983 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -12.251 -5.612 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.066 4.066 5 C -0.135 4.135 6 C -0.009 4.009 7 N -0.184 5.184 8 C -0.109 4.109 9 C -0.093 4.093 10 N -0.171 5.171 11 C -0.195 4.195 12 C 0.046 3.954 13 C -0.490 4.490 14 H 0.114 0.886 15 C -0.181 4.181 16 N -0.424 5.424 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.175 1.175 21 C -0.188 4.188 22 C -0.050 4.050 23 Cl -0.051 7.051 24 C -0.175 4.175 25 C -0.066 4.066 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.064 -12.283 -6.699 14.032 hybrid contribution 0.018 0.780 2.220 2.353 sum -1.046 -11.503 -4.479 12.389 Atomic orbital electron populations 1.21918 0.94496 1.02607 1.02063 1.22153 0.96313 0.88238 1.01088 1.62084 1.04068 1.11212 1.49611 1.22057 0.87942 0.96840 0.99747 1.21565 0.99543 0.93337 0.99103 1.21642 0.93646 0.87437 0.98223 1.59843 1.56883 1.01077 1.00610 1.22294 0.98719 0.99590 0.90301 1.18791 0.86551 1.05365 0.98599 1.67280 1.14131 1.13971 1.21683 1.22570 0.99220 1.03380 0.94330 1.18731 0.91578 0.92342 0.92774 1.19894 0.99126 1.15540 1.14428 0.88643 1.26921 0.93615 0.94624 1.02988 1.69875 1.12312 1.22102 1.38157 0.85107 0.80367 0.77904 0.75940 1.18728 1.19193 1.17486 1.21285 0.96710 1.01320 0.99437 1.21310 0.84290 1.00791 0.98591 1.98244 1.14021 1.95505 1.97360 1.22258 0.96881 0.95848 1.02538 1.22082 0.99188 0.92883 0.92464 0.92115 0.90636 0.93073 0.89518 0.95151 0.88687 0.95629 0.90784 0.90633 0.93820 0.95054 0.93647 0.89458 0.84006 0.89239 0.85825 0.91432 0.91616 0.96508 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.16 71.99 0.66 -1.91 16 2 C 0.05 0.92 5.99 86.31 0.52 1.43 16 3 N -0.54 -12.82 4.81 -896.36 -4.31 -17.13 16 4 C 0.06 1.42 5.42 86.33 0.47 1.89 16 5 C -0.10 -2.57 5.36 30.65 0.16 -2.41 16 6 C 0.10 3.30 2.23 44.99 0.10 3.40 16 7 N -0.46 -17.59 4.06 -701.81 -2.85 -20.44 16 8 C 0.04 1.31 8.53 127.69 1.09 2.40 16 9 C 0.14 6.08 5.28 133.32 0.70 6.79 16 10 N -0.46 -21.09 6.98 -191.09 -1.33 -22.42 16 11 C -0.03 -1.48 10.97 85.37 0.94 -0.55 16 12 C 0.05 2.58 5.62 -21.18 -0.12 2.46 16 13 C -0.46 -22.58 9.05 23.39 0.21 -22.37 16 14 H 0.10 4.37 7.93 -2.91 -0.02 4.35 16 15 C 0.04 1.72 5.11 85.22 0.44 2.16 16 16 N -0.80 -38.78 10.96 21.81 0.24 -38.54 16 17 Si 0.99 34.60 29.61 68.60 2.03 36.63 16 18 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 19 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 20 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 21 C -0.16 -8.21 8.56 22.65 0.19 -8.01 16 22 C -0.02 -0.93 6.32 22.28 0.14 -0.79 16 23 Cl -0.08 -3.30 28.43 -2.72 -0.08 -3.38 16 24 C -0.14 -4.43 4.43 30.64 0.14 -4.29 16 25 C 0.06 1.69 4.85 86.32 0.42 2.11 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.94 6.21 -2.39 -0.01 0.92 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.03 0.56 8.08 -2.38 -0.02 0.54 16 31 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.95 6.39 -2.39 -0.02 1.93 16 35 H 0.04 1.67 8.05 -2.39 -0.02 1.65 16 36 H 0.03 1.12 6.01 -2.39 -0.01 1.11 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 2.48 6.30 -2.39 -0.02 2.47 16 39 H 0.14 6.22 8.06 -2.91 -0.02 6.19 16 40 H 0.30 12.90 8.30 -92.71 -0.77 12.13 16 41 H 0.12 6.54 6.11 -2.91 -0.02 6.53 16 42 H 0.07 2.61 5.82 -2.38 -0.01 2.59 16 43 H 0.07 2.17 6.26 -2.39 -0.01 2.15 16 44 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 2.16 5.81 -2.38 -0.01 2.14 16 Total: -1.00 -53.72 357.50 0.75 -52.97 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.99 Total: 29.98 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 6.06 Total: -17.68 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -8.25 Total: -98.52 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 2.03 Total: 36.63 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.08 Total: -3.38 kcal Total: -53.72 0.75 -52.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165069977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.979 kcal (2) G-P(sol) polarization free energy of solvation -53.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds