Wall clock time and date at job start Tue Mar 31 2020 14:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 N 1.46904 * 109.47117 * 120.00030 * 2 1 3 5 5 C 1.46955 * 110.99588 * 298.95272 * 4 2 1 6 6 C 1.53056 * 109.36486 * 176.81087 * 5 4 2 7 7 N 1.46958 * 109.36226 * 58.39951 * 6 5 4 8 8 C 1.38403 * 110.99821 * 176.81495 * 7 6 5 9 9 N 1.32740 * 119.43954 * 37.39075 * 8 7 6 10 10 C 1.31479 * 121.74243 * 179.72341 * 9 8 7 11 11 C 1.40798 * 120.38301 * 0.54062 * 10 9 8 12 12 C 1.41194 * 120.56013 * 179.72526 * 11 10 9 13 13 H 1.08001 * 120.00256 * 26.18958 * 12 11 10 14 14 C 1.39864 * 119.99534 * 206.46355 * 12 11 10 15 15 N 1.30901 * 120.00610 * 12.04070 * 14 12 11 16 16 Si 1.86801 * 119.99748 * 192.03294 * 14 12 11 17 17 H 1.48503 * 109.47167 * 90.00340 * 16 14 12 18 18 H 1.48502 * 109.47206 * 210.00446 * 16 14 12 19 19 H 1.48498 * 109.47528 * 330.00410 * 16 14 12 20 20 C 1.41281 * 118.87057 * 359.45225 * 11 10 9 21 21 C 1.36667 * 118.39971 * 0.27416 * 20 11 10 22 22 Cl 1.73602 * 120.25863 * 180.02562 * 21 20 11 23 23 C 1.46959 * 110.87950 * 300.68149 * 7 6 5 24 24 C 1.46951 * 111.00242 * 175.15465 * 4 2 1 25 25 H 1.09001 * 109.48937 * 63.19555 * 24 4 2 26 26 C 1.53002 * 109.48632 * 303.15616 * 24 4 2 27 27 H 1.09002 * 109.47163 * 60.00252 * 1 2 3 28 28 H 1.08995 * 109.47520 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47413 * 300.00269 * 1 2 3 30 30 H 1.09002 * 109.47413 * 239.99731 * 2 1 3 31 31 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46787 * 299.99978 * 3 2 1 33 33 H 1.09002 * 109.47088 * 59.99532 * 3 2 1 34 34 H 1.08997 * 109.49406 * 56.84465 * 5 4 2 35 35 H 1.08997 * 109.51198 * 296.79054 * 5 4 2 36 36 H 1.08997 * 109.48869 * 298.43770 * 6 5 4 37 37 H 1.09000 * 109.50760 * 178.37955 * 6 5 4 38 38 H 1.07990 * 119.80977 * 180.29060 * 10 9 8 39 39 H 0.96994 * 120.00684 * 179.97438 * 15 14 12 40 40 H 1.08002 * 120.79547 * 180.25162 * 20 11 10 41 41 H 1.09005 * 109.48560 * 179.28478 * 23 7 6 42 42 H 1.08997 * 109.48800 * 299.35074 * 23 7 6 43 43 H 1.08992 * 109.47440 * 59.99968 * 26 24 4 44 44 H 1.09004 * 109.47033 * 179.97438 * 26 24 4 45 45 H 1.09000 * 109.46777 * 299.99370 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5690 -0.0118 2.4214 6 6 2.0315 -0.8063 3.6450 7 7 3.4959 -0.9272 3.6224 8 6 3.9572 -1.5796 4.7525 9 7 3.2559 -2.5881 5.2556 10 6 3.6545 -3.2429 6.3238 11 6 4.8470 -2.8794 6.9782 12 6 5.2755 -3.5763 8.1289 13 1 4.9753 -4.6023 8.2820 14 6 6.0843 -2.9359 9.0734 15 7 6.2514 -1.6387 9.0203 16 14 6.9258 -3.9319 10.4111 17 1 8.2610 -4.3733 9.9337 18 1 7.0869 -3.0929 11.6258 19 1 6.0987 -5.1213 10.7372 20 6 5.6103 -1.8092 6.4604 21 6 5.1540 -1.1656 5.3444 22 17 6.0540 0.1553 4.6670 23 6 3.9465 -1.6079 2.4004 24 6 3.4840 -0.8133 1.1769 25 1 3.9312 0.1805 1.1980 26 6 3.9166 -1.5408 -0.0976 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.4810 0.0543 2.4207 35 1 1.9941 0.9913 2.4572 36 1 1.5843 -1.8001 3.6236 37 1 1.7233 -0.2883 4.5532 38 1 3.0618 -4.0617 6.7038 39 1 6.8119 -1.1946 9.6755 40 1 6.5320 -1.5069 6.9352 41 1 5.0346 -1.6739 2.4011 42 1 3.5211 -2.6108 2.3649 43 1 3.5854 -0.9758 -0.9688 44 1 5.0028 -1.6299 -0.1143 45 1 3.4698 -2.5349 -0.1179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165200728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:06 Heat of formation + Delta-G solvation = 32.663749 kcal Electronic energy + Delta-G solvation = -25871.968282 eV Core-core repulsion = 22335.866260 eV Total energy + Delta-G solvation = -3536.102022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.93685 -38.55419 -35.96384 -35.39927 -34.01834 -32.78782 -31.26882 -30.56761 -29.27247 -27.28153 -27.08569 -26.13289 -24.32771 -22.66627 -21.54656 -21.22813 -20.34956 -18.63419 -17.58373 -16.63065 -15.91454 -15.56244 -15.28442 -14.97132 -14.85726 -14.26116 -14.12477 -14.04469 -13.26935 -13.22044 -12.93664 -12.62472 -12.50999 -12.27181 -12.04347 -11.92334 -11.89953 -11.64994 -11.55686 -11.44706 -11.30340 -11.27341 -11.05404 -10.91495 -10.74604 -10.64136 -10.38496 -10.27922 -10.15265 -9.81701 -9.51350 -8.56382 -8.26845 -8.11499 -7.94391 -7.35551 -6.94899 -4.64325 2.33723 2.72206 2.95772 2.98961 3.01519 3.31540 3.75100 3.97154 4.35617 4.48789 4.82298 4.97947 5.11138 5.22644 5.31826 5.37086 5.43724 5.49782 5.57641 5.65108 5.70814 5.73354 5.79934 5.83999 5.90091 5.93934 5.98686 6.06420 6.15237 6.23010 6.26345 6.29176 6.46091 6.52229 6.59925 6.65856 6.83601 6.94465 7.03782 7.25379 7.28843 7.54800 7.57391 7.75504 8.06469 8.29010 8.50102 8.54856 9.34179 9.92634 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003253 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.242089 B = 8605.847033 C = 8996.963230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 C -0.187 4.187 4 N -0.526 5.526 5 C 0.054 3.946 6 C 0.071 3.929 7 N -0.462 5.462 8 C 0.149 3.851 9 N -0.472 5.472 10 C -0.009 4.009 11 C 0.070 3.930 12 C -0.439 4.439 13 H 0.087 0.913 14 C 0.070 3.930 15 N -0.785 5.785 16 Si 0.918 3.082 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.127 4.127 21 C -0.018 4.018 22 Cl -0.100 7.100 23 C 0.073 3.927 24 C 0.084 3.916 25 H 0.050 0.950 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.287 0.713 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 3.207 -11.973 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.245 4.245 4 N -0.251 5.251 5 C -0.074 4.074 6 C -0.057 4.057 7 N -0.183 5.183 8 C -0.080 4.080 9 N -0.183 5.183 10 C -0.172 4.172 11 C 0.065 3.935 12 C -0.469 4.469 13 H 0.105 0.895 14 C -0.149 4.149 15 N -0.410 5.410 16 Si 0.742 3.258 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.154 4.154 21 C -0.048 4.048 22 Cl -0.072 7.072 23 C -0.054 4.054 24 C -0.024 4.024 25 H 0.068 0.932 26 C -0.203 4.203 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.098 0.902 40 H 0.159 0.841 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.819 3.305 -12.322 13.637 hybrid contribution 1.281 0.148 1.161 1.735 sum -3.538 3.453 -11.160 12.206 Atomic orbital electron populations 1.21858 0.94646 1.02277 1.01370 1.21747 0.95465 0.92324 0.94155 1.22471 1.01693 0.98323 1.02059 1.62418 1.10597 1.50493 1.01628 1.22272 0.99634 0.96212 0.89317 1.21925 0.87629 0.99829 0.96305 1.59699 1.10835 1.47887 0.99927 1.18510 0.95116 0.96965 0.97436 1.67169 1.33134 1.05318 1.12651 1.22405 0.96095 1.02693 0.96033 1.18475 0.90418 0.91625 0.92940 1.19558 1.25309 0.99621 1.02398 0.89477 1.26026 0.94741 0.94956 0.99177 1.69778 1.29092 1.09141 1.32941 0.86130 0.80148 0.80319 0.79192 1.19052 1.20041 1.18344 1.21409 1.01552 0.98628 0.93763 1.21102 0.94278 0.92520 0.96940 1.98254 1.74815 1.48519 1.85593 1.22143 0.99733 0.95573 0.88000 1.21652 0.87299 0.98542 0.94956 0.93166 1.21868 1.01018 1.01057 0.96399 0.92677 0.91948 0.92550 0.89821 0.92424 0.92570 0.92218 0.90539 0.94065 0.92762 0.91154 0.85038 0.90221 0.84146 0.90969 0.94031 0.92581 0.92194 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.99 37.16 0.33 -1.06 16 2 C 0.07 0.78 2.63 -67.71 -0.18 0.60 16 3 C -0.19 -1.94 8.49 37.16 0.32 -1.62 16 4 N -0.53 -7.11 4.52 -218.57 -0.99 -8.10 16 5 C 0.05 0.77 4.82 -3.76 -0.02 0.75 16 6 C 0.07 1.27 5.13 -3.76 -0.02 1.25 16 7 N -0.46 -8.97 4.04 -172.92 -0.70 -9.67 16 8 C 0.15 3.36 5.58 -155.06 -0.86 2.49 16 9 N -0.47 -11.06 9.16 -11.75 -0.11 -11.17 16 10 C -0.01 -0.20 10.97 -16.74 -0.18 -0.39 16 11 C 0.07 1.76 5.58 -106.65 -0.59 1.17 16 12 C -0.44 -10.68 9.08 -37.85 -0.34 -11.03 16 13 H 0.09 2.00 7.87 -52.49 -0.41 1.58 16 14 C 0.07 1.63 5.26 -17.34 -0.09 1.54 16 15 N -0.79 -19.00 10.81 55.54 0.60 -18.40 16 16 Si 0.92 17.35 29.58 -169.99 -5.03 12.32 16 17 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 18 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 20 C -0.13 -3.16 8.50 -38.99 -0.33 -3.49 16 21 C -0.02 -0.42 6.32 -39.57 -0.25 -0.67 16 22 Cl -0.10 -2.05 28.43 -51.86 -1.47 -3.53 16 23 C 0.07 1.28 4.83 -3.77 -0.02 1.26 16 24 C 0.08 1.19 2.19 -67.66 -0.15 1.04 16 25 H 0.05 0.75 6.59 -51.93 -0.34 0.41 16 26 C -0.15 -1.70 8.87 37.16 0.33 -1.37 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.56 6.36 -51.93 -0.33 0.23 16 30 H 0.08 0.87 5.98 -51.93 -0.31 0.56 16 31 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.66 6.46 -51.93 -0.34 0.32 16 34 H 0.08 0.98 6.17 -51.93 -0.32 0.66 16 35 H 0.04 0.61 6.47 -51.93 -0.34 0.27 16 36 H 0.05 1.05 7.68 -51.93 -0.40 0.65 16 37 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 38 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 39 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 40 H 0.14 3.60 6.20 -52.49 -0.33 3.28 16 41 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.57 6.25 -51.93 -0.32 0.25 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -25.37 359.18 -11.06 -36.44 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.72 Total: 6.21 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.06 Total: -9.52 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -1.19 Total: -47.34 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.47 Total: -3.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -25.37 -11.06 -36.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165200728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.099 kcal (2) G-P(sol) polarization free energy of solvation -25.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds