Wall clock time and date at job start Tue Mar 31 2020 14:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 N 1.46904 * 109.47117 * 120.00030 * 2 1 3 5 5 C 1.46955 * 110.99588 * 298.95272 * 4 2 1 6 6 C 1.53056 * 109.36486 * 176.81087 * 5 4 2 7 7 N 1.46958 * 109.36226 * 58.39951 * 6 5 4 8 8 C 1.38403 * 110.99821 * 176.81495 * 7 6 5 9 9 N 1.32740 * 119.43954 * 37.39075 * 8 7 6 10 10 C 1.31479 * 121.74243 * 179.72341 * 9 8 7 11 11 C 1.40798 * 120.38301 * 0.54062 * 10 9 8 12 12 C 1.41194 * 120.56013 * 179.72526 * 11 10 9 13 13 H 1.08001 * 120.00256 * 26.18958 * 12 11 10 14 14 C 1.39864 * 119.99534 * 206.46355 * 12 11 10 15 15 N 1.30901 * 120.00610 * 12.04070 * 14 12 11 16 16 Si 1.86801 * 119.99748 * 192.03294 * 14 12 11 17 17 H 1.48503 * 109.47167 * 90.00340 * 16 14 12 18 18 H 1.48502 * 109.47206 * 210.00446 * 16 14 12 19 19 H 1.48498 * 109.47528 * 330.00410 * 16 14 12 20 20 C 1.41281 * 118.87057 * 359.45225 * 11 10 9 21 21 C 1.36667 * 118.39971 * 0.27416 * 20 11 10 22 22 Cl 1.73602 * 120.25863 * 180.02562 * 21 20 11 23 23 C 1.46959 * 110.87950 * 300.68149 * 7 6 5 24 24 C 1.46951 * 111.00242 * 175.15465 * 4 2 1 25 25 H 1.09001 * 109.48937 * 63.19555 * 24 4 2 26 26 C 1.53002 * 109.48632 * 303.15616 * 24 4 2 27 27 H 1.09002 * 109.47163 * 60.00252 * 1 2 3 28 28 H 1.08995 * 109.47520 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47413 * 300.00269 * 1 2 3 30 30 H 1.09002 * 109.47413 * 239.99731 * 2 1 3 31 31 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46787 * 299.99978 * 3 2 1 33 33 H 1.09002 * 109.47088 * 59.99532 * 3 2 1 34 34 H 1.08997 * 109.49406 * 56.84465 * 5 4 2 35 35 H 1.08997 * 109.51198 * 296.79054 * 5 4 2 36 36 H 1.08997 * 109.48869 * 298.43770 * 6 5 4 37 37 H 1.09000 * 109.50760 * 178.37955 * 6 5 4 38 38 H 1.07990 * 119.80977 * 180.29060 * 10 9 8 39 39 H 0.96994 * 120.00684 * 179.97438 * 15 14 12 40 40 H 1.08002 * 120.79547 * 180.25162 * 20 11 10 41 41 H 1.09005 * 109.48560 * 179.28478 * 23 7 6 42 42 H 1.08997 * 109.48800 * 299.35074 * 23 7 6 43 43 H 1.08992 * 109.47440 * 59.99968 * 26 24 4 44 44 H 1.09004 * 109.47033 * 179.97438 * 26 24 4 45 45 H 1.09000 * 109.46777 * 299.99370 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5690 -0.0118 2.4214 6 6 2.0315 -0.8063 3.6450 7 7 3.4959 -0.9272 3.6224 8 6 3.9572 -1.5796 4.7525 9 7 3.2559 -2.5881 5.2556 10 6 3.6545 -3.2429 6.3238 11 6 4.8470 -2.8794 6.9782 12 6 5.2755 -3.5763 8.1289 13 1 4.9753 -4.6023 8.2820 14 6 6.0843 -2.9359 9.0734 15 7 6.2514 -1.6387 9.0203 16 14 6.9258 -3.9319 10.4111 17 1 8.2610 -4.3733 9.9337 18 1 7.0869 -3.0929 11.6258 19 1 6.0987 -5.1213 10.7372 20 6 5.6103 -1.8092 6.4604 21 6 5.1540 -1.1656 5.3444 22 17 6.0540 0.1553 4.6670 23 6 3.9465 -1.6079 2.4004 24 6 3.4840 -0.8133 1.1769 25 1 3.9312 0.1805 1.1980 26 6 3.9166 -1.5408 -0.0976 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.4810 0.0543 2.4207 35 1 1.9941 0.9913 2.4572 36 1 1.5843 -1.8001 3.6236 37 1 1.7233 -0.2883 4.5532 38 1 3.0618 -4.0617 6.7038 39 1 6.8119 -1.1946 9.6755 40 1 6.5320 -1.5069 6.9352 41 1 5.0346 -1.6739 2.4011 42 1 3.5211 -2.6108 2.3649 43 1 3.5854 -0.9758 -0.9688 44 1 5.0028 -1.6299 -0.1143 45 1 3.4698 -2.5349 -0.1179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165200728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:05 Heat of formation + Delta-G solvation = 19.693300 kcal Electronic energy + Delta-G solvation = -25872.530723 eV Core-core repulsion = 22335.866260 eV Total energy + Delta-G solvation = -3536.664463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34907 -40.08780 -37.42639 -37.15781 -35.69927 -33.96561 -32.57454 -32.39986 -30.92105 -28.28588 -28.08193 -27.65302 -25.86438 -24.27657 -23.19344 -22.57508 -21.72086 -19.78727 -19.40059 -18.14297 -17.47731 -16.94476 -16.85682 -16.37718 -16.07590 -15.95895 -15.23910 -15.13753 -14.84678 -14.60655 -14.37636 -14.02823 -13.75486 -13.68956 -13.46131 -13.27462 -13.06965 -12.96506 -12.91846 -12.71480 -12.62183 -12.50569 -12.50077 -12.24911 -12.08013 -11.96588 -11.79083 -11.66743 -11.46437 -11.24397 -11.18718 -10.33328 -10.10857 -9.73946 -9.18799 -9.08389 -8.70991 -6.50720 0.52148 0.85404 1.40392 1.47119 1.51706 1.54437 2.16649 2.59461 2.90349 2.95003 3.48641 3.82086 3.94667 4.07161 4.15647 4.22776 4.32361 4.33611 4.42349 4.48092 4.54063 4.59240 4.67123 4.70219 4.78614 4.81204 4.82624 4.91241 4.94908 5.00647 5.04496 5.07065 5.08583 5.15760 5.22309 5.25910 5.29761 5.39567 5.50053 5.70578 5.79024 6.04706 6.20246 6.23586 6.28749 6.49734 6.67456 6.74694 7.48539 8.19157 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.003253 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.242089 B = 8605.847033 C = 8996.963230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 C -0.182 4.182 4 N -0.534 5.534 5 C 0.066 3.934 6 C 0.074 3.926 7 N -0.464 5.464 8 C 0.149 3.851 9 N -0.480 5.480 10 C -0.020 4.020 11 C 0.048 3.952 12 C -0.464 4.464 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.816 5.816 16 Si 0.992 3.008 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.253 1.253 20 C -0.143 4.143 21 C -0.029 4.029 22 Cl -0.077 7.077 23 C 0.078 3.922 24 C 0.092 3.908 25 H 0.046 0.954 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.145 0.855 39 H 0.294 0.706 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.023 0.977 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 3.548 -13.239 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.240 4.240 4 N -0.260 5.260 5 C -0.063 4.063 6 C -0.053 4.053 7 N -0.186 5.186 8 C -0.080 4.080 9 N -0.191 5.191 10 C -0.183 4.183 11 C 0.043 3.957 12 C -0.493 4.493 13 H 0.112 0.888 14 C -0.184 4.184 15 N -0.441 5.441 16 Si 0.812 3.188 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.177 1.177 20 C -0.169 4.169 21 C -0.059 4.059 22 Cl -0.049 7.049 23 C -0.050 4.050 24 C -0.017 4.017 25 H 0.064 0.936 26 C -0.196 4.196 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.162 0.838 39 H 0.105 0.895 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.116 3.655 -13.615 14.997 hybrid contribution 1.341 0.116 1.476 1.997 sum -3.775 3.771 -12.140 13.260 Atomic orbital electron populations 1.21837 0.93522 1.02190 1.02248 1.21869 0.96321 0.92515 0.92959 1.22418 1.01108 0.97895 1.02628 1.62417 1.10039 1.51206 1.02305 1.22137 1.00593 0.95258 0.88268 1.21908 0.86459 0.99253 0.97725 1.59766 1.11841 1.47390 0.99599 1.18857 0.94717 0.96413 0.98054 1.67240 1.33442 1.05693 1.12690 1.22644 0.96150 1.03256 0.96284 1.18761 0.91010 0.92210 0.93757 1.19857 1.26534 1.00114 1.02818 0.88767 1.26898 0.94621 0.95771 1.01109 1.69832 1.29551 1.10669 1.34024 0.85036 0.78886 0.78772 0.76138 1.18608 1.19376 1.17665 1.21364 1.01471 0.99510 0.94590 1.21226 0.94853 0.93108 0.96754 1.98245 1.74255 1.47231 1.85163 1.22139 0.99078 0.95171 0.88568 1.21564 0.87888 0.97912 0.94344 0.93600 1.21825 1.01424 1.00745 0.95656 0.90627 0.92510 0.92874 0.88761 0.93234 0.90595 0.93058 0.88699 0.94166 0.94570 0.92553 0.83772 0.89491 0.85394 0.91899 0.95874 0.90436 0.91608 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.99 71.98 0.65 -1.67 16 2 C 0.07 1.35 2.63 44.91 0.12 1.47 16 3 C -0.18 -3.26 8.49 71.98 0.61 -2.65 16 4 N -0.53 -13.59 4.52 -845.42 -3.82 -17.41 16 5 C 0.07 1.81 4.82 86.31 0.42 2.22 16 6 C 0.07 2.68 5.13 86.31 0.44 3.12 16 7 N -0.46 -18.23 4.04 -701.00 -2.84 -21.06 16 8 C 0.15 6.89 5.58 133.33 0.74 7.63 16 9 N -0.48 -23.11 9.16 -191.09 -1.75 -24.86 16 10 C -0.02 -0.99 10.97 85.37 0.94 -0.06 16 11 C 0.05 2.46 5.58 -21.18 -0.12 2.34 16 12 C -0.46 -22.99 9.08 23.39 0.21 -22.78 16 13 H 0.09 4.37 7.87 -2.91 -0.02 4.35 16 14 C 0.03 1.52 5.26 85.23 0.45 1.97 16 15 N -0.82 -40.09 10.81 21.82 0.24 -39.86 16 16 Si 0.99 35.21 29.58 68.60 2.03 37.24 16 17 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 18 H -0.27 -9.21 7.11 99.48 0.71 -8.51 16 19 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 20 C -0.14 -7.33 8.50 22.65 0.19 -7.13 16 21 C -0.03 -1.38 6.32 22.28 0.14 -1.24 16 22 Cl -0.08 -3.19 28.43 -2.72 -0.08 -3.26 16 23 C 0.08 2.73 4.83 86.31 0.42 3.14 16 24 C 0.09 2.48 2.19 44.92 0.10 2.58 16 25 H 0.05 1.31 6.59 -2.39 -0.02 1.29 16 26 C -0.14 -2.96 8.87 71.98 0.64 -2.32 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.91 6.36 -2.39 -0.02 0.89 16 30 H 0.09 1.63 5.98 -2.39 -0.01 1.62 16 31 H 0.05 0.97 6.59 -2.39 -0.02 0.96 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.01 6.46 -2.39 -0.02 1.00 16 34 H 0.09 2.28 6.17 -2.39 -0.01 2.27 16 35 H 0.04 1.14 6.47 -2.39 -0.02 1.12 16 36 H 0.04 1.42 7.68 -2.39 -0.02 1.41 16 37 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 38 H 0.14 6.48 8.06 -2.92 -0.02 6.46 16 39 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 40 H 0.13 6.81 6.20 -2.91 -0.02 6.79 16 41 H 0.06 2.29 8.13 -2.38 -0.02 2.27 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.33 6.25 -2.39 -0.01 1.32 16 44 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -55.51 359.18 0.72 -54.79 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.99 Total: 27.79 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.95 Total: -13.37 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -8.17 Total: -103.19 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.26 kcal Total: -55.51 0.72 -54.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165200728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.484 kcal (2) G-P(sol) polarization free energy of solvation -55.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds