Wall clock time and date at job start Tue Mar 31 2020 14:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47036 * 2 1 4 4 C 1.35354 * 116.99719 * 180.02562 * 3 2 1 5 5 N 1.30557 * 125.44203 * 180.02562 * 4 3 2 6 6 C 1.36330 * 108.37816 * 179.97438 * 5 4 3 7 7 C 1.47371 * 126.41054 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00474 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99958 * 0.02562 * 7 6 5 10 10 C 1.46494 * 120.00199 * 174.27501 * 9 7 6 11 11 C 1.52993 * 109.47540 * 184.87923 * 10 9 7 12 12 C 1.52997 * 109.47710 * 178.79769 * 11 10 9 13 13 C 1.53007 * 115.54701 * 40.15871 * 12 11 10 14 14 N 1.46490 * 109.47371 * 65.20376 * 13 12 11 15 15 C 1.36937 * 120.00121 * 185.11916 * 14 13 12 16 16 H 1.08002 * 120.00077 * 4.91418 * 15 14 13 17 17 C 1.38816 * 120.00278 * 184.91145 * 15 14 13 18 18 N 1.31615 * 120.00385 * 183.49812 * 17 15 14 19 19 Si 1.86803 * 119.99676 * 3.49904 * 17 15 14 20 20 H 1.48500 * 109.47112 * 91.19608 * 19 17 15 21 21 H 1.48496 * 109.47074 * 211.19228 * 19 17 15 22 22 H 1.48504 * 109.47440 * 331.19644 * 19 17 15 23 23 C 1.53000 * 117.50125 * 254.45448 * 12 11 10 24 24 C 1.52996 * 117.50210 * 185.82670 * 12 11 10 25 25 C 1.35914 * 107.17936 * 0.02562 * 6 5 4 26 26 O 1.34200 * 125.45100 * 359.69184 * 4 3 2 27 27 H 1.08999 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46914 * 299.99652 * 1 2 3 29 29 H 1.08998 * 109.47178 * 59.99855 * 1 2 3 30 30 H 1.09001 * 109.47024 * 240.00635 * 2 1 3 31 31 H 1.08992 * 109.47554 * 120.00347 * 2 1 3 32 32 H 0.96999 * 119.99680 * 354.27968 * 9 7 6 33 33 H 1.09005 * 109.46993 * 304.88233 * 10 9 7 34 34 H 1.09005 * 109.47189 * 64.87701 * 10 9 7 35 35 H 1.09000 * 109.47133 * 298.79983 * 11 10 9 36 36 H 1.08995 * 109.47182 * 58.79875 * 11 10 9 37 37 H 1.09001 * 109.46721 * 185.20650 * 13 12 11 38 38 H 1.09001 * 109.47037 * 305.20258 * 13 12 11 39 39 H 0.97006 * 120.00235 * 5.11420 * 14 13 12 40 40 H 0.97003 * 119.99919 * 180.02562 * 18 17 15 41 41 H 1.08997 * 117.49421 * 359.97438 * 23 12 11 42 42 H 1.08997 * 117.49983 * 145.02009 * 23 12 11 43 43 H 1.09004 * 117.49729 * 214.97609 * 24 12 11 44 44 H 1.08993 * 117.49778 * 0.02562 * 24 12 11 45 45 H 1.08001 * 126.45808 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6783 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5325 3.1430 -0.0012 9 7 6.0358 4.7846 -0.0001 10 6 7.0825 5.8016 0.1262 11 6 6.4393 7.1865 0.2214 12 6 7.5310 8.2460 0.3834 13 6 8.7885 8.0324 -0.4617 14 7 8.4484 8.1496 -1.8817 15 6 9.3958 7.8921 -2.8362 16 1 10.3696 7.5264 -2.5457 17 6 9.1048 8.1013 -4.1773 18 7 9.9904 7.7891 -5.0995 19 14 7.4559 8.8258 -4.6732 20 1 7.5678 10.3046 -4.7492 21 1 7.0590 8.2906 -6.0003 22 1 6.4301 8.4583 -3.6642 23 6 7.7079 8.8722 1.7682 24 6 7.0847 9.6879 0.6336 25 6 5.4846 1.1053 -0.0015 26 8 4.2631 0.5428 0.0048 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.1071 5.0521 -0.0833 33 1 7.6682 5.6105 1.0255 34 1 7.7341 5.7628 -0.7468 35 1 5.8710 7.3864 -0.6871 36 1 5.7714 7.2186 1.0821 37 1 9.5325 8.7858 -0.2028 38 1 9.1935 7.0395 -0.2658 39 1 7.5519 8.4094 -2.1459 40 1 9.7871 7.9356 -6.0366 41 1 7.0462 8.5295 2.5636 42 1 8.7203 9.1319 2.0775 43 1 7.6872 10.4843 0.1966 44 1 6.0133 9.8816 0.6832 45 1 6.4309 0.5848 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165980279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:57 Heat of formation + Delta-G solvation = -37.313870 kcal Electronic energy + Delta-G solvation = -26700.090632 eV Core-core repulsion = 22720.244988 eV Total energy + Delta-G solvation = -3979.845644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.59293 -40.79049 -39.98139 -39.54524 -36.22727 -36.03964 -35.85598 -33.21620 -32.91410 -31.45369 -30.48508 -28.05343 -26.05686 -24.64085 -24.26906 -24.04891 -23.18629 -22.94725 -21.74653 -20.58397 -20.10538 -19.15338 -18.68820 -18.34393 -17.43976 -17.15660 -16.79843 -16.60925 -16.47590 -16.27839 -16.04923 -15.52906 -15.26988 -15.03987 -14.75230 -14.55225 -14.23531 -13.99449 -13.94298 -13.58270 -13.42801 -13.05957 -12.86722 -12.69469 -12.68467 -12.51995 -12.22726 -12.19461 -11.98327 -11.91374 -11.83546 -11.81526 -11.43751 -11.07921 -10.94432 -10.56948 -10.21449 -9.78703 -9.25874 -8.02094 -5.34358 -0.02784 0.79513 0.85950 1.35460 1.40397 1.47187 1.60618 2.04519 2.13254 2.48306 2.85431 3.27651 3.29110 3.67911 3.72001 3.76864 3.91633 3.92893 3.94664 4.02601 4.07100 4.13206 4.25310 4.34585 4.41341 4.48346 4.58881 4.63503 4.82490 4.86059 4.86891 4.95653 4.99355 5.10348 5.14128 5.17665 5.21903 5.29654 5.37215 5.38481 5.60243 5.76908 6.22318 6.23866 6.52603 7.03103 7.09779 7.86327 8.07769 9.19925 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.002727 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.006785 B =10266.210590 C =11023.983849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.255 6.255 4 C 0.386 3.614 5 N -0.481 5.481 6 C -0.075 4.075 7 C 0.597 3.403 8 O -0.567 6.567 9 N -0.702 5.702 10 C 0.125 3.875 11 C -0.075 4.075 12 C -0.148 4.148 13 C 0.187 3.813 14 N -0.749 5.749 15 C -0.230 4.230 16 H 0.051 0.949 17 C -0.066 4.066 18 N -0.986 5.986 19 Si 0.958 3.042 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.250 1.250 23 C -0.146 4.146 24 C -0.166 4.166 25 C 0.029 3.971 26 O -0.214 6.214 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.416 0.584 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.019 0.981 38 H 0.025 0.975 39 H 0.367 0.633 40 H 0.257 0.743 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.001 -14.741 17.579 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.164 6.164 4 C 0.139 3.861 5 N -0.227 5.227 6 C -0.193 4.193 7 C 0.384 3.616 8 O -0.446 6.446 9 N -0.352 5.352 10 C 0.002 3.998 11 C -0.112 4.112 12 C -0.149 4.149 13 C 0.061 3.939 14 N -0.394 5.394 15 C -0.361 4.361 16 H 0.069 0.931 17 C -0.258 4.258 18 N -0.636 5.636 19 Si 0.785 3.215 20 H -0.204 1.204 21 H -0.225 1.225 22 H -0.175 1.175 23 C -0.183 4.183 24 C -0.203 4.203 25 C -0.043 4.043 26 O -0.105 6.105 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.130 0.870 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -21.531 -14.354 17.549 31.266 hybrid contribution -0.291 -0.266 -1.124 1.192 sum -21.822 -14.620 16.424 30.979 Atomic orbital electron populations 1.21862 0.89745 1.05092 1.03881 1.23456 0.97975 0.77727 1.04180 1.86423 1.07737 1.33344 1.88895 1.23333 0.84221 0.81412 0.97150 1.70995 1.04015 1.22837 1.24901 1.21471 0.89912 0.94585 1.13317 1.16930 0.86184 0.82373 0.76160 1.90844 1.19457 1.81976 1.52353 1.45762 1.12106 1.04933 1.72399 1.21387 0.89896 0.86929 1.01609 1.21125 0.96381 0.90524 1.03204 1.21455 0.97402 0.95680 1.00344 1.20290 0.93771 0.97768 0.82055 1.42616 1.10685 1.84313 1.01810 1.19016 0.94774 1.34768 0.87512 0.93108 1.25533 1.01866 1.02772 0.95582 1.69901 1.37408 1.56037 1.00295 0.85363 0.80474 0.78417 0.77243 1.20398 1.22456 1.17484 1.23142 1.02844 1.01884 0.90425 1.23041 1.01963 0.92625 1.02676 1.25561 0.86659 0.92138 0.99977 1.84430 1.15950 1.38574 1.71559 0.87045 0.91154 0.91438 0.89860 0.89497 0.74748 0.91055 0.93389 0.91727 0.88269 0.96269 0.95695 0.79893 0.93427 0.86310 0.88589 0.89709 0.87025 0.71862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 71.98 0.74 0.00 16 2 C 0.04 0.35 6.38 71.98 0.46 0.81 16 3 O -0.26 -4.48 10.19 -64.23 -0.65 -5.13 16 4 C 0.39 8.22 8.98 130.43 1.17 9.39 16 5 N -0.48 -12.44 11.11 -419.38 -4.66 -17.10 16 6 C -0.08 -1.96 6.99 40.31 0.28 -1.68 16 7 C 0.60 18.93 7.81 86.65 0.68 19.60 16 8 O -0.57 -21.55 16.90 -4.10 -0.07 -21.62 16 9 N -0.70 -20.44 5.55 -466.42 -2.59 -23.02 16 10 C 0.12 3.91 4.80 86.38 0.41 4.33 16 11 C -0.07 -1.95 5.37 30.59 0.16 -1.79 16 12 C -0.15 -4.23 1.83 -52.18 -0.10 -4.33 16 13 C 0.19 7.39 5.32 86.38 0.46 7.84 16 14 N -0.75 -36.02 5.29 -343.46 -1.82 -37.83 16 15 C -0.23 -13.67 10.47 84.03 0.88 -12.79 16 16 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 18 N -0.99 -65.53 13.97 21.65 0.30 -65.23 16 19 Si 0.96 47.17 27.90 68.60 1.91 49.08 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 22 H -0.25 -11.02 6.30 99.48 0.63 -10.39 16 23 C -0.15 -3.15 9.87 30.60 0.30 -2.85 16 24 C -0.17 -4.05 9.97 30.59 0.31 -3.75 16 25 C 0.03 0.57 11.93 67.28 0.80 1.37 16 26 O -0.21 -3.87 10.20 18.92 0.19 -3.68 16 27 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.42 10.50 8.22 -92.71 -0.76 9.74 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 1.94 6.85 -2.38 -0.02 1.93 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.94 7.95 -2.39 -0.02 1.92 16 37 H 0.02 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.03 1.05 6.69 -2.39 -0.02 1.04 16 39 H 0.37 16.87 5.46 -92.70 -0.51 16.36 16 40 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 41 H 0.12 1.98 8.09 -2.39 -0.02 1.96 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.27 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -80.15 384.29 -0.68 -80.83 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.33 Total: 31.14 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 7.03 Total: 12.57 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -8.76 Total: -143.19 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.53 Total: -30.43 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.91 Total: 49.08 kcal Total: -80.15 -0.68 -80.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165980279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.519 kcal (2) G-P(sol) polarization free energy of solvation -80.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds