Wall clock time and date at job start Tue Mar 31 2020 14:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47404 * 2 1 4 4 C 1.35731 * 117.00572 * 180.02562 * 3 2 1 5 5 C 1.41846 * 126.79200 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.81610 * 179.97438 * 5 4 3 7 7 C 1.47541 * 126.88523 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99571 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00515 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99982 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47030 * 179.72458 * 10 9 7 12 12 C 1.52998 * 109.47300 * 175.02322 * 11 10 9 13 13 C 1.53005 * 115.55003 * 278.03680 * 12 11 10 14 14 N 1.46499 * 109.46984 * 303.89502 * 13 12 11 15 15 C 1.36933 * 120.00093 * 175.59436 * 14 13 12 16 16 H 1.07996 * 120.00032 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99977 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47362 * 89.99589 * 19 17 15 21 21 H 1.48504 * 109.47087 * 209.99434 * 19 17 15 22 22 H 1.48495 * 109.47029 * 329.99392 * 19 17 15 23 23 C 1.52994 * 117.49898 * 132.32382 * 12 11 10 24 24 C 1.53000 * 117.49884 * 63.70002 * 12 11 10 25 25 O 1.34662 * 106.23906 * 0.22802 * 6 5 4 26 26 N 1.20878 * 111.63328 * 359.58634 * 25 6 5 27 27 H 1.09003 * 109.47180 * 59.99752 * 1 2 3 28 28 H 1.08999 * 109.47557 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47215 * 300.00139 * 1 2 3 30 30 H 1.09003 * 109.47215 * 239.99861 * 2 1 3 31 31 H 1.09000 * 109.47482 * 119.99816 * 2 1 3 32 32 H 1.08006 * 128.09137 * 359.97083 * 5 4 3 33 33 H 0.97000 * 119.99679 * 359.72504 * 9 7 6 34 34 H 1.08994 * 109.47336 * 299.72393 * 10 9 7 35 35 H 1.08995 * 109.47363 * 59.72699 * 10 9 7 36 36 H 1.08993 * 109.47115 * 295.02460 * 11 10 9 37 37 H 1.08999 * 109.46896 * 55.02065 * 11 10 9 38 38 H 1.08995 * 109.47289 * 63.89910 * 13 12 11 39 39 H 1.09005 * 109.46927 * 183.89746 * 13 12 11 40 40 H 0.97001 * 119.99632 * 355.59913 * 14 13 12 41 41 H 0.97001 * 120.00044 * 180.02562 * 18 17 15 42 42 H 1.08997 * 117.50095 * 0.02562 * 23 12 11 43 43 H 1.09005 * 117.49989 * 145.02501 * 23 12 11 44 44 H 1.08999 * 117.50042 * 214.98082 * 24 12 11 45 45 H 1.09004 * 117.49858 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0453 2.7626 -0.0001 6 6 5.3625 2.3987 -0.0004 7 6 6.5304 3.3003 -0.0007 8 8 6.3680 4.5053 -0.0003 9 7 7.7771 2.7884 -0.0014 10 6 8.9366 3.6838 -0.0012 11 6 10.2219 2.8537 0.0048 12 6 11.4303 3.7838 -0.1201 13 6 11.7726 4.2337 -1.5418 14 7 11.9774 3.0571 -2.3903 15 6 12.2067 3.2116 -3.7314 16 1 12.2362 4.2008 -4.1638 17 6 12.4001 2.0967 -4.5355 18 7 12.3636 0.8912 -4.0087 19 14 12.7137 2.3076 -6.3649 20 1 14.1741 2.4271 -6.6063 21 1 12.1859 1.1282 -7.0968 22 1 12.0304 3.5351 -6.8459 23 6 12.5918 3.5673 0.8519 24 6 11.6744 4.7810 1.0144 25 8 5.3812 1.0522 -0.0060 26 7 4.2639 0.5910 -0.0010 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6293 3.7594 0.0002 33 1 7.9066 1.8271 0.0022 34 1 8.9125 4.3097 -0.8931 35 1 8.9078 4.3152 0.8868 36 1 10.2888 2.2944 0.9378 37 1 10.2097 2.1591 -0.8351 38 1 10.9533 4.8314 -1.9410 39 1 12.6837 4.8319 -1.5242 40 1 11.9504 2.1686 -2.0021 41 1 12.4992 0.1121 -4.5705 42 1 12.4953 2.7620 1.5800 43 1 13.6003 3.7452 0.4785 44 1 12.0794 5.7572 0.7479 45 1 10.9744 4.7740 1.8499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166205697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:58 Heat of formation + Delta-G solvation = 24.908642 kcal Electronic energy + Delta-G solvation = -26409.680698 eV Core-core repulsion = 22432.533225 eV Total energy + Delta-G solvation = -3977.147474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.24056 -39.82506 -39.33043 -38.29454 -35.10927 -33.94831 -33.77931 -32.36583 -31.54273 -30.79939 -29.92643 -26.07205 -25.12604 -23.89967 -23.60032 -22.80627 -22.55684 -21.74582 -20.96006 -19.55622 -18.26023 -18.23832 -17.22513 -17.09785 -16.32974 -16.26450 -16.15623 -15.61027 -15.09034 -14.90326 -14.43773 -14.34906 -14.13060 -13.76469 -13.50792 -13.40248 -13.12916 -13.08338 -12.72163 -12.36285 -12.31446 -11.94764 -11.64652 -11.55823 -11.48315 -11.16186 -10.95471 -10.84834 -10.71915 -10.39837 -10.14063 -10.13678 -9.93006 -9.66512 -9.63213 -9.35245 -9.19079 -8.84318 -6.90279 -5.76138 -3.03923 0.51302 1.81338 2.25596 2.35172 2.81016 3.16196 3.44271 3.49806 3.51120 3.78671 4.03000 4.38461 4.46769 4.54655 4.61101 4.64113 4.79055 4.89152 4.98737 5.05895 5.12485 5.17657 5.28040 5.30946 5.39345 5.49444 5.55913 5.58537 5.64283 5.70443 5.89044 6.06235 6.14075 6.18843 6.28388 6.41322 6.43720 6.56692 6.61418 6.75090 6.82274 7.18069 7.71263 7.73955 7.86383 8.43142 9.54827 10.12672 10.48120 11.46721 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.002534 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.458913 B =11045.679805 C =12759.591999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.281 6.281 4 C 0.206 3.794 5 C -0.156 4.156 6 C -0.053 4.053 7 C 0.603 3.397 8 O -0.510 6.510 9 N -0.706 5.706 10 C 0.124 3.876 11 C -0.094 4.094 12 C -0.119 4.119 13 C 0.187 3.813 14 N -0.728 5.728 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.166 4.166 24 C -0.178 4.178 25 O 0.119 5.881 26 N -0.389 5.389 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.190 0.810 33 H 0.409 0.591 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.018 0.982 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 0.281 13.755 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.188 6.188 4 C 0.009 3.991 5 C -0.179 4.179 6 C -0.120 4.120 7 C 0.385 3.615 8 O -0.386 6.386 9 N -0.356 5.356 10 C 0.001 3.999 11 C -0.132 4.132 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.372 5.372 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.203 4.203 24 C -0.215 4.215 25 O 0.053 5.947 26 N -0.113 5.113 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.208 0.792 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.296 0.111 13.580 22.785 hybrid contribution 0.052 -0.224 -0.964 0.991 sum -18.244 -0.114 12.616 22.181 Atomic orbital electron populations 1.21799 0.92061 1.03295 1.03718 1.22862 0.95979 0.80421 1.02588 1.86217 1.12902 1.30407 1.89276 1.21835 0.85905 0.90446 1.00896 1.22169 0.90071 0.99296 1.06337 1.24119 0.96645 0.84345 1.06869 1.16434 0.81088 0.86037 0.77903 1.90892 1.84886 1.12804 1.50035 1.45946 1.05171 1.11650 1.72856 1.21523 0.82824 0.92460 1.03053 1.21287 0.91079 0.97606 1.03211 1.21558 0.96503 1.00774 0.93146 1.20185 0.97061 0.90753 0.86034 1.42306 1.86490 1.03361 1.05048 1.19224 1.40589 0.92717 0.84352 0.91255 1.24712 1.02957 0.95268 0.98019 1.69649 1.56998 0.96897 1.34656 0.86212 0.77825 0.76834 0.85470 1.21779 1.21811 1.20790 1.22998 0.95868 0.99512 1.01904 1.22977 1.03503 0.94803 1.00250 1.84969 1.22858 1.18552 1.68353 1.74019 0.90417 1.22087 1.24749 0.91266 0.89871 0.91334 0.91388 0.91480 0.79249 0.75527 0.90191 0.91098 0.91702 0.88918 0.95597 0.96436 0.78123 0.93565 0.89258 0.88677 0.88899 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.15 0.38 -0.43 16 2 C 0.06 0.45 6.38 37.15 0.24 0.69 16 3 O -0.28 -2.99 10.21 -18.90 -0.19 -3.18 16 4 C 0.21 2.42 8.00 -16.72 -0.13 2.29 16 5 C -0.16 -1.75 10.97 -38.77 -0.43 -2.17 16 6 C -0.05 -0.63 7.29 -36.36 -0.26 -0.90 16 7 C 0.60 7.92 7.82 -12.47 -0.10 7.82 16 8 O -0.51 -8.10 16.91 5.29 0.09 -8.01 16 9 N -0.71 -8.47 5.55 -61.35 -0.34 -8.81 16 10 C 0.12 1.61 5.49 -4.04 -0.02 1.59 16 11 C -0.09 -1.29 5.20 -26.73 -0.14 -1.43 16 12 C -0.12 -1.80 1.65 -154.51 -0.25 -2.05 16 13 C 0.19 3.66 6.15 -4.04 -0.02 3.63 16 14 N -0.73 -17.78 5.23 -59.91 -0.31 -18.09 16 15 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.17 -2.29 9.87 -26.73 -0.26 -2.55 16 24 C -0.18 -2.21 9.57 -26.73 -0.26 -2.47 16 25 O 0.12 1.43 11.03 15.50 0.17 1.60 16 26 N -0.39 -4.83 11.50 30.47 0.35 -4.48 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.19 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.41 4.18 8.30 -40.82 -0.34 3.85 16 34 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 35 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 36 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 37 H 0.09 1.52 6.94 -51.93 -0.36 1.16 16 38 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 39 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 40 H 0.38 9.80 6.80 -40.82 -0.28 9.52 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -32.08 387.38 -7.00 -39.08 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.79 Total: 8.90 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.51 Total: -3.18 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.42 Total: -58.39 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.08 -7.00 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166205697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.988 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds