Wall clock time and date at job start Tue Mar 31 2020 14:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47404 * 2 1 4 4 C 1.35731 * 117.00572 * 180.02562 * 3 2 1 5 5 C 1.41846 * 126.79200 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.81610 * 179.97438 * 5 4 3 7 7 C 1.47541 * 126.88523 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99571 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00515 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99982 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47030 * 179.72458 * 10 9 7 12 12 C 1.52998 * 109.47300 * 175.02322 * 11 10 9 13 13 C 1.53005 * 115.55003 * 278.03680 * 12 11 10 14 14 N 1.46499 * 109.46984 * 303.89502 * 13 12 11 15 15 C 1.36933 * 120.00093 * 175.59436 * 14 13 12 16 16 H 1.07996 * 120.00032 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99977 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47362 * 89.99589 * 19 17 15 21 21 H 1.48504 * 109.47087 * 209.99434 * 19 17 15 22 22 H 1.48495 * 109.47029 * 329.99392 * 19 17 15 23 23 C 1.52994 * 117.49898 * 132.32382 * 12 11 10 24 24 C 1.53000 * 117.49884 * 63.70002 * 12 11 10 25 25 O 1.34662 * 106.23906 * 0.22802 * 6 5 4 26 26 N 1.20878 * 111.63328 * 359.58634 * 25 6 5 27 27 H 1.09003 * 109.47180 * 59.99752 * 1 2 3 28 28 H 1.08999 * 109.47557 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47215 * 300.00139 * 1 2 3 30 30 H 1.09003 * 109.47215 * 239.99861 * 2 1 3 31 31 H 1.09000 * 109.47482 * 119.99816 * 2 1 3 32 32 H 1.08006 * 128.09137 * 359.97083 * 5 4 3 33 33 H 0.97000 * 119.99679 * 359.72504 * 9 7 6 34 34 H 1.08994 * 109.47336 * 299.72393 * 10 9 7 35 35 H 1.08995 * 109.47363 * 59.72699 * 10 9 7 36 36 H 1.08993 * 109.47115 * 295.02460 * 11 10 9 37 37 H 1.08999 * 109.46896 * 55.02065 * 11 10 9 38 38 H 1.08995 * 109.47289 * 63.89910 * 13 12 11 39 39 H 1.09005 * 109.46927 * 183.89746 * 13 12 11 40 40 H 0.97001 * 119.99632 * 355.59913 * 14 13 12 41 41 H 0.97001 * 120.00044 * 180.02562 * 18 17 15 42 42 H 1.08997 * 117.50095 * 0.02562 * 23 12 11 43 43 H 1.09005 * 117.49989 * 145.02501 * 23 12 11 44 44 H 1.08999 * 117.50042 * 214.98082 * 24 12 11 45 45 H 1.09004 * 117.49858 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0453 2.7626 -0.0001 6 6 5.3625 2.3987 -0.0004 7 6 6.5304 3.3003 -0.0007 8 8 6.3680 4.5053 -0.0003 9 7 7.7771 2.7884 -0.0014 10 6 8.9366 3.6838 -0.0012 11 6 10.2219 2.8537 0.0048 12 6 11.4303 3.7838 -0.1201 13 6 11.7726 4.2337 -1.5418 14 7 11.9774 3.0571 -2.3903 15 6 12.2067 3.2116 -3.7314 16 1 12.2362 4.2008 -4.1638 17 6 12.4001 2.0967 -4.5355 18 7 12.3636 0.8912 -4.0087 19 14 12.7137 2.3076 -6.3649 20 1 14.1741 2.4271 -6.6063 21 1 12.1859 1.1282 -7.0968 22 1 12.0304 3.5351 -6.8459 23 6 12.5918 3.5673 0.8519 24 6 11.6744 4.7810 1.0144 25 8 5.3812 1.0522 -0.0060 26 7 4.2639 0.5910 -0.0010 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6293 3.7594 0.0002 33 1 7.9066 1.8271 0.0022 34 1 8.9125 4.3097 -0.8931 35 1 8.9078 4.3152 0.8868 36 1 10.2888 2.2944 0.9378 37 1 10.2097 2.1591 -0.8351 38 1 10.9533 4.8314 -1.9410 39 1 12.6837 4.8319 -1.5242 40 1 11.9504 2.1686 -2.0021 41 1 12.4992 0.1121 -4.5705 42 1 12.4953 2.7620 1.5800 43 1 13.6003 3.7452 0.4785 44 1 12.0794 5.7572 0.7479 45 1 10.9744 4.7740 1.8499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166205697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:57 Heat of formation + Delta-G solvation = 2.113037 kcal Electronic energy + Delta-G solvation = -26410.669190 eV Core-core repulsion = 22432.533225 eV Total energy + Delta-G solvation = -3978.135965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.16486 -40.90162 -40.12076 -39.50572 -36.25766 -35.79019 -34.63001 -33.29810 -32.76406 -32.18360 -31.02198 -27.82008 -26.14785 -24.71076 -24.58677 -24.51309 -23.60236 -22.80962 -21.87188 -20.60477 -19.62203 -19.16061 -18.93967 -18.07024 -17.34340 -17.13770 -17.06309 -16.78714 -16.55905 -16.10075 -15.73717 -15.56089 -15.24427 -14.99805 -14.76050 -14.66531 -14.18980 -14.09779 -13.88482 -13.56390 -13.14918 -13.03684 -12.96808 -12.78806 -12.55838 -12.41281 -12.23481 -12.15829 -12.10648 -11.92146 -11.86731 -11.53537 -11.08242 -11.06327 -10.88340 -10.51278 -10.49528 -10.23736 -8.94116 -7.92891 -5.19623 -0.44041 0.90292 1.37412 1.46165 1.47620 1.48328 1.56715 1.79150 2.21041 2.56009 2.90751 2.93984 3.40633 3.54561 3.69166 3.87505 3.89029 3.89362 3.90735 4.01792 4.06540 4.12129 4.25267 4.28829 4.43483 4.51838 4.52400 4.67515 4.77495 4.84261 4.89581 4.96153 5.00227 5.12133 5.14078 5.16177 5.29659 5.33386 5.38797 5.43034 5.52017 5.82943 6.18555 6.29980 6.78782 6.88954 7.37329 8.14451 8.39505 9.30311 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.002534 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.458913 B =11045.679805 C =12759.591999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.288 6.288 4 C 0.203 3.797 5 C -0.151 4.151 6 C -0.058 4.058 7 C 0.608 3.392 8 O -0.540 6.540 9 N -0.698 5.698 10 C 0.132 3.868 11 C -0.082 4.082 12 C -0.140 4.140 13 C 0.186 3.814 14 N -0.736 5.736 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.072 4.072 18 N -0.965 5.965 19 Si 0.967 3.033 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.273 1.273 23 C -0.166 4.166 24 C -0.149 4.149 25 O 0.118 5.882 26 N -0.400 5.400 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.206 0.794 33 H 0.418 0.582 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.013 0.987 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 0.685 14.886 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.195 6.195 4 C 0.006 3.994 5 C -0.173 4.173 6 C -0.124 4.124 7 C 0.391 3.609 8 O -0.418 6.418 9 N -0.349 5.349 10 C 0.009 3.991 11 C -0.120 4.120 12 C -0.141 4.141 13 C 0.060 3.940 14 N -0.379 5.379 15 C -0.375 4.375 16 H 0.088 0.912 17 C -0.265 4.265 18 N -0.616 5.616 19 Si 0.797 3.203 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.198 1.198 23 C -0.204 4.204 24 C -0.186 4.186 25 O 0.052 5.948 26 N -0.125 5.125 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.210 0.790 41 H 0.059 0.941 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.157 0.532 14.726 24.168 hybrid contribution 0.299 -0.323 -1.285 1.359 sum -18.858 0.209 13.440 23.158 Atomic orbital electron populations 1.21827 0.89957 1.04690 1.03828 1.23124 0.97626 0.79285 1.02545 1.86235 1.12168 1.32021 1.89055 1.21990 0.86413 0.90449 1.00510 1.22427 0.89773 0.99922 1.05200 1.23902 0.96470 0.84316 1.07709 1.16474 0.81430 0.85739 0.77276 1.90875 1.85340 1.13998 1.51575 1.45886 1.04749 1.12111 1.72143 1.21393 0.82806 0.92331 1.02580 1.21145 0.90764 0.96898 1.03185 1.21387 0.98036 1.03374 0.91273 1.20258 0.96391 0.89094 0.88261 1.42459 1.86240 1.04495 1.04676 1.19590 1.39200 0.92712 0.85976 0.91159 1.25461 1.03859 0.95146 1.02018 1.69790 1.58611 0.97376 1.35801 0.85231 0.77594 0.76752 0.80748 1.21484 1.22179 1.19806 1.23058 0.94781 1.01062 1.01451 1.23072 1.02525 0.94189 0.98838 1.84958 1.22805 1.18503 1.68568 1.73998 0.90665 1.22503 1.25301 0.91302 0.87812 0.91038 0.91688 0.91279 0.77691 0.74477 0.92724 0.89443 0.88962 0.92098 0.96232 0.96882 0.78990 0.94060 0.87400 0.90083 0.88483 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.73 6.38 71.98 0.46 1.19 16 3 O -0.29 -5.86 10.21 -90.54 -0.92 -6.78 16 4 C 0.20 4.62 8.00 85.78 0.69 5.30 16 5 C -0.15 -3.24 10.97 22.79 0.25 -2.99 16 6 C -0.06 -1.34 7.29 24.36 0.18 -1.16 16 7 C 0.61 15.57 7.82 86.70 0.68 16.24 16 8 O -0.54 -16.83 16.91 -3.99 -0.07 -16.89 16 9 N -0.70 -16.21 5.55 -466.29 -2.59 -18.80 16 10 C 0.13 3.29 5.49 86.38 0.47 3.77 16 11 C -0.08 -2.16 5.20 30.60 0.16 -2.00 16 12 C -0.14 -4.07 1.65 -52.18 -0.09 -4.15 16 13 C 0.19 7.32 6.15 86.38 0.53 7.85 16 14 N -0.74 -36.56 5.23 -343.45 -1.80 -38.35 16 15 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 16 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 18 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 19 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.17 -4.26 9.87 30.59 0.30 -3.96 16 24 C -0.15 -3.28 9.57 30.59 0.29 -2.99 16 25 O 0.12 2.76 11.03 65.64 0.72 3.48 16 26 N -0.40 -9.71 11.50 -172.01 -1.98 -11.68 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.42 8.24 8.30 -92.71 -0.77 7.47 16 34 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 35 H 0.09 1.93 7.72 -2.39 -0.02 1.91 16 36 H 0.09 1.93 7.93 -2.39 -0.02 1.91 16 37 H 0.06 2.02 6.94 -2.39 -0.02 2.00 16 38 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 39 H 0.01 0.53 8.10 -2.38 -0.02 0.51 16 40 H 0.38 19.68 6.80 -92.71 -0.63 19.05 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 43 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.12 2.02 7.90 -2.39 -0.02 2.00 16 Total: -1.00 -68.98 387.38 1.27 -67.71 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.38 Total: 30.83 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 5.97 Total: 0.12 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -6.08 Total: -126.86 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.27 Total: -20.19 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -68.98 1.27 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166205697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.826 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds