Wall clock time and date at job start Tue Mar 31 2020 14:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46969 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46987 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00171 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47199 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00071 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99830 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99744 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47248 * 60.00713 * 19 17 15 21 21 H 1.48505 * 109.46936 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47370 * 300.00129 * 19 17 15 23 23 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 24 24 C 1.34519 * 125.78768 * 240.00128 * 23 2 1 25 25 C 1.41386 * 106.83815 * 179.97438 * 24 23 2 26 26 C 1.34514 * 106.83824 * 0.02562 * 25 24 23 27 27 O 1.34294 * 108.42523 * 359.73429 * 26 25 24 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 30 30 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 32 32 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 33 33 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 34 34 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 35 35 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 36 36 H 1.08992 * 109.47534 * 299.99582 * 9 8 7 37 37 H 1.08996 * 109.47134 * 60.00388 * 9 8 7 38 38 H 1.00902 * 110.99423 * 56.04590 * 10 9 8 39 39 H 1.09002 * 109.47087 * 300.00137 * 11 10 9 40 40 H 1.09001 * 109.46853 * 60.00161 * 11 10 9 41 41 H 0.97005 * 120.00552 * 0.02562 * 14 12 11 42 42 H 0.96994 * 120.00070 * 179.97438 * 18 17 15 43 43 H 1.07997 * 126.57993 * 359.95813 * 24 23 2 44 44 H 1.07998 * 126.58034 * 180.02562 * 25 24 23 45 45 H 1.08004 * 125.78437 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 6 2.1941 -0.9409 -6.1492 10 7 1.7036 -0.2490 -7.3487 11 6 2.1740 -0.9154 -8.5703 12 6 1.6525 -0.1787 -9.7771 13 8 0.9577 0.8050 -9.6336 14 7 1.9582 -0.6129 -11.0158 15 6 1.4843 0.0576 -12.1137 16 1 0.8655 0.9336 -11.9859 17 6 1.7999 -0.3898 -13.3908 18 7 2.5531 -1.4553 -13.5463 19 14 1.1534 0.5235 -14.8866 20 1 1.6489 1.9232 -14.8643 21 1 1.6285 -0.1506 -16.1216 22 1 -0.3314 0.5234 -14.8632 23 6 2.0323 -0.7104 1.2304 24 6 2.8089 -0.1720 2.1877 25 6 3.0378 -1.1848 3.1473 26 6 2.3878 -2.2817 2.7186 27 8 1.7761 -1.9870 1.5600 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.1487 0.5387 -2.5435 32 1 3.2846 -0.9412 -3.6510 33 1 1.8308 -1.9683 -3.6506 34 1 0.5941 -0.2197 -4.8996 35 1 2.0475 0.8080 -4.9003 36 1 3.2841 -0.9406 -6.1495 37 1 1.8311 -1.9687 -6.1491 38 1 1.9724 0.7235 -7.3404 39 1 3.2639 -0.9149 -8.5877 40 1 1.8108 -1.9430 -8.5865 41 1 2.5136 -1.3999 -11.1306 42 1 2.7731 -1.7678 -14.4377 43 1 3.1856 0.8398 2.2175 44 1 3.6223 -1.0950 4.0510 45 1 2.3587 -3.2361 3.2233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166509981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:47 Heat of formation + Delta-G solvation = -66.648242 kcal Electronic energy + Delta-G solvation = -25401.904998 eV Core-core repulsion = 21420.787320 eV Total energy + Delta-G solvation = -3981.117678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.88395 -40.06404 -38.32898 -36.61310 -34.94060 -34.63415 -33.83929 -33.15476 -31.44327 -31.08221 -28.94944 -27.21688 -25.39561 -24.47687 -23.18425 -22.07561 -21.75668 -21.38719 -20.12085 -19.22566 -17.99220 -17.84907 -17.27730 -16.50885 -16.28097 -16.07982 -15.85912 -15.51847 -14.83095 -14.77327 -14.55125 -14.35854 -14.04216 -13.74874 -13.50127 -13.41120 -13.10760 -13.06149 -12.93201 -12.73495 -12.18681 -12.12168 -11.99512 -11.83992 -11.78996 -11.47414 -11.43750 -11.07963 -10.94964 -10.44546 -10.23367 -10.21583 -10.10301 -9.50533 -9.39175 -8.78319 -8.48217 -8.08625 -7.96583 -6.41965 -3.82997 1.41751 2.26917 2.29524 2.65323 2.86512 3.19904 3.25694 3.30002 3.90259 4.06378 4.07484 4.26610 4.29638 4.45970 4.59186 4.75421 4.79154 4.83103 4.94190 5.02387 5.10308 5.16532 5.20908 5.25491 5.40932 5.47701 5.49571 5.54224 5.60360 5.61378 5.77800 5.79103 5.94115 5.97383 6.00862 6.12135 6.18013 6.26161 6.85863 7.12029 7.17748 7.54576 7.63032 7.86494 8.05600 8.60777 9.17247 9.53794 10.05174 10.75673 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.050913 B = 0.001418 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.823925 B =19737.926129 C =20046.206731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 H 0.126 0.874 4 C 0.514 3.486 5 O -0.526 6.526 6 N -0.727 5.727 7 C 0.120 3.880 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.051 3.949 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.011 3.989 24 C -0.207 4.207 25 C -0.217 4.217 26 C -0.037 4.037 27 O -0.161 6.161 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.402 0.598 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.349 0.651 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 0.924 31.019 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 H 0.143 0.857 4 C 0.299 3.701 5 O -0.401 6.401 6 N -0.379 5.379 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.469 6.469 14 N -0.200 5.200 15 C -0.431 4.431 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.040 4.040 24 C -0.226 4.226 25 C -0.236 4.236 26 C -0.105 4.105 27 O -0.056 6.056 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.237 0.763 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.526 0.238 30.804 30.810 hybrid contribution 1.016 0.563 -0.750 1.382 sum 0.490 0.800 30.054 30.069 Atomic orbital electron populations 1.21828 0.91122 1.03859 1.03563 1.19897 0.98319 0.99257 0.87615 0.85651 1.20383 0.80519 0.84829 0.84350 1.90760 1.37063 1.25719 1.86578 1.45963 1.54038 1.32378 1.05540 1.21353 0.99436 0.96602 0.82950 1.21744 1.02600 0.99747 0.92609 1.21826 0.96941 0.98709 0.89326 1.60049 1.63562 1.06691 0.99886 1.21670 0.97507 0.99033 0.89999 1.19803 0.86018 0.87542 0.84075 1.90513 1.41900 1.28625 1.85839 1.41860 1.46062 1.27764 1.04276 1.19664 1.29277 1.10690 0.83452 0.87963 1.25264 0.96916 0.96575 0.99124 1.69602 1.36992 1.23499 1.24185 0.85910 0.79200 0.79226 0.79830 1.19921 1.20970 1.19876 1.21504 1.02047 0.82987 0.97460 1.21545 1.03645 1.01374 0.96034 1.21783 1.05815 0.93530 1.02443 1.24049 0.98863 1.00775 0.86777 1.84027 1.58661 1.27685 1.35183 0.91314 0.90717 0.90848 0.76322 0.91373 0.91138 0.90059 0.91214 0.95234 0.90766 0.83196 0.93819 0.89540 0.77432 0.91804 0.83503 0.83474 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.07 37.16 0.34 -0.42 16 2 C -0.03 -0.21 3.13 -92.93 -0.29 -0.50 16 3 H 0.13 0.52 8.10 -51.93 -0.42 0.10 16 4 C 0.51 5.10 7.15 -10.99 -0.08 5.03 16 5 O -0.53 -7.68 15.81 -0.87 -0.01 -7.70 16 6 N -0.73 -5.59 5.45 -60.29 -0.33 -5.92 16 7 C 0.12 1.08 5.67 -4.04 -0.02 1.05 16 8 C -0.13 -1.15 5.59 -26.73 -0.15 -1.30 16 9 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 10 N -0.67 -10.45 6.13 -115.06 -0.70 -11.15 16 11 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 12 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 13 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 14 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 16 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 19 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.01 0.11 5.20 -35.62 -0.19 -0.08 16 24 C -0.21 -1.77 10.78 -39.70 -0.43 -2.20 16 25 C -0.22 -1.74 10.91 -39.70 -0.43 -2.18 16 26 C -0.04 -0.30 12.09 29.42 0.36 0.05 16 27 O -0.16 -1.76 10.36 -0.69 -0.01 -1.77 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.24 7.56 -51.93 -0.39 -0.15 16 31 H 0.40 1.95 7.89 -40.82 -0.32 1.62 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.55 8.43 -39.29 -0.33 5.22 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.20 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -35.89 388.11 -7.55 -43.43 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.80 Total: 11.89 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.27 Total: 3.27 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.37 Total: -55.22 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.07 Total: -25.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.89 -7.55 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166509981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.215 kcal (2) G-P(sol) polarization free energy of solvation -35.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds