Wall clock time and date at job start Tue Mar 31 2020 14:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 5 5 O 1.21284 * 120.00109 * 239.99936 * 4 2 1 6 6 N 1.34777 * 120.00137 * 60.00151 * 4 2 1 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47035 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46969 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46987 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00171 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47199 * 180.02562 * 11 10 9 13 13 O 1.21284 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00071 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99830 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99744 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47248 * 60.00713 * 19 17 15 21 21 H 1.48505 * 109.46936 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47370 * 300.00129 * 19 17 15 23 23 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 24 24 C 1.34519 * 125.78768 * 240.00128 * 23 2 1 25 25 C 1.41386 * 106.83815 * 179.97438 * 24 23 2 26 26 C 1.34514 * 106.83824 * 0.02562 * 25 24 23 27 27 O 1.34294 * 108.42523 * 359.73429 * 26 25 24 28 28 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 30 30 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 32 32 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 33 33 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 34 34 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 35 35 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 36 36 H 1.08992 * 109.47534 * 299.99582 * 9 8 7 37 37 H 1.08996 * 109.47134 * 60.00388 * 9 8 7 38 38 H 1.00902 * 110.99423 * 56.04590 * 10 9 8 39 39 H 1.09002 * 109.47087 * 300.00137 * 11 10 9 40 40 H 1.09001 * 109.46853 * 60.00161 * 11 10 9 41 41 H 0.97005 * 120.00552 * 0.02562 * 14 12 11 42 42 H 0.96994 * 120.00070 * 179.97438 * 18 17 15 43 43 H 1.07997 * 126.57993 * 359.95813 * 24 23 2 44 44 H 1.07998 * 126.58034 * 180.02562 * 25 24 23 45 45 H 1.08004 * 125.78437 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 6 1.6841 -0.2197 -4.9000 9 6 2.1941 -0.9409 -6.1492 10 7 1.7036 -0.2490 -7.3487 11 6 2.1740 -0.9154 -8.5703 12 6 1.6525 -0.1787 -9.7771 13 8 0.9577 0.8050 -9.6336 14 7 1.9582 -0.6129 -11.0158 15 6 1.4843 0.0576 -12.1137 16 1 0.8655 0.9336 -11.9859 17 6 1.7999 -0.3898 -13.3908 18 7 2.5531 -1.4553 -13.5463 19 14 1.1534 0.5235 -14.8866 20 1 1.6489 1.9232 -14.8643 21 1 1.6285 -0.1506 -16.1216 22 1 -0.3314 0.5234 -14.8632 23 6 2.0323 -0.7104 1.2304 24 6 2.8089 -0.1720 2.1877 25 6 3.0378 -1.1848 3.1473 26 6 2.3878 -2.2817 2.7186 27 8 1.7761 -1.9870 1.5600 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.1487 0.5387 -2.5435 32 1 3.2846 -0.9412 -3.6510 33 1 1.8308 -1.9683 -3.6506 34 1 0.5941 -0.2197 -4.8996 35 1 2.0475 0.8080 -4.9003 36 1 3.2841 -0.9406 -6.1495 37 1 1.8311 -1.9687 -6.1491 38 1 1.9724 0.7235 -7.3404 39 1 3.2639 -0.9149 -8.5877 40 1 1.8108 -1.9430 -8.5865 41 1 2.5136 -1.3999 -11.1306 42 1 2.7731 -1.7678 -14.4377 43 1 3.1856 0.8398 2.2175 44 1 3.6223 -1.0950 4.0510 45 1 2.3587 -3.2361 3.2233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166509981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:46 Heat of formation + Delta-G solvation = -94.220940 kcal Electronic energy + Delta-G solvation = -25403.100640 eV Core-core repulsion = 21420.787320 eV Total energy + Delta-G solvation = -3982.313320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.50846 -40.83081 -40.15159 -37.66819 -36.12529 -35.67437 -35.23385 -33.77736 -33.28363 -32.23508 -29.54448 -28.55530 -26.65457 -25.55132 -24.30757 -22.69619 -22.59739 -22.09036 -21.09908 -20.74101 -19.89894 -18.60034 -18.00810 -17.76909 -17.24752 -16.98537 -16.79582 -16.62469 -16.38409 -15.95313 -15.69561 -15.46028 -15.12144 -15.04706 -14.63694 -14.39428 -14.14689 -13.69573 -13.56713 -13.53999 -13.40010 -13.31792 -13.16704 -12.85511 -12.76839 -12.58608 -12.49703 -12.42127 -12.41042 -12.11617 -11.84077 -11.49580 -10.96016 -10.79194 -10.35139 -10.14384 -10.01675 -9.39111 -9.33485 -8.46221 -5.95351 0.79155 1.40655 1.42636 1.53639 1.54313 1.68791 2.05310 2.09624 2.19963 2.30594 2.95062 3.21081 3.52397 3.53707 3.71023 3.98047 4.01569 4.11040 4.15865 4.18591 4.22569 4.33105 4.34581 4.48681 4.56620 4.58935 4.70855 4.73467 4.77197 4.80524 4.94794 5.01932 5.15113 5.15959 5.20699 5.27493 5.40716 5.40987 5.63171 5.88382 6.09607 6.24771 6.41742 6.49697 6.60068 7.12464 7.18547 7.56230 8.11165 8.70889 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.050913 B = 0.001418 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.823925 B =19737.926129 C =20046.206731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.025 4.025 3 H 0.158 0.842 4 C 0.511 3.489 5 O -0.580 6.580 6 N -0.713 5.713 7 C 0.127 3.873 8 C -0.114 4.114 9 C 0.062 3.938 10 N -0.682 5.682 11 C 0.064 3.936 12 C 0.437 3.563 13 O -0.623 6.623 14 N -0.573 5.573 15 C -0.337 4.337 16 H 0.080 0.920 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.013 4.013 24 C -0.215 4.215 25 C -0.227 4.227 26 C -0.051 4.051 27 O -0.189 6.189 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.419 0.581 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.346 0.654 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 1.735 31.679 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 H 0.176 0.824 4 C 0.298 3.702 5 O -0.459 6.459 6 N -0.365 5.365 7 C 0.002 3.998 8 C -0.152 4.152 9 C -0.067 4.067 10 N -0.315 5.315 11 C -0.068 4.068 12 C 0.224 3.776 13 O -0.509 6.509 14 N -0.210 5.210 15 C -0.466 4.466 16 H 0.098 0.902 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.064 4.064 24 C -0.234 4.234 25 C -0.246 4.246 26 C -0.118 4.118 27 O -0.086 6.086 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.256 0.744 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.185 0.815 44 H 0.186 0.814 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.518 1.061 31.475 31.497 hybrid contribution 1.026 0.297 -0.878 1.383 sum 0.508 1.358 30.596 30.631 Atomic orbital electron populations 1.21834 0.89715 1.03047 1.05300 1.20051 0.99354 1.00001 0.85167 0.82430 1.20940 0.79585 0.84180 0.85496 1.90734 1.39651 1.28174 1.87358 1.45842 1.53510 1.32511 1.04679 1.21190 0.98985 0.96210 0.83401 1.21583 1.02458 0.99932 0.91254 1.21909 0.97657 0.98713 0.88470 1.60049 1.64309 1.06768 1.00372 1.21533 0.98539 0.98759 0.88019 1.20878 0.84612 0.86988 0.85081 1.90480 1.43412 1.30445 1.86602 1.41940 1.46517 1.27963 1.04613 1.19662 1.30683 1.11158 0.85137 0.90201 1.26051 0.96687 0.97204 1.01263 1.69666 1.37183 1.24138 1.25128 0.84978 0.78535 0.78138 0.76619 1.19598 1.19542 1.19715 1.22051 1.02844 0.82831 0.98637 1.21936 1.03164 1.02450 0.95891 1.22158 1.05883 0.93365 1.03153 1.24729 0.98605 1.02205 0.86304 1.84009 1.59549 1.28714 1.36287 0.93376 0.89430 0.88634 0.74380 0.92074 0.92278 0.90034 0.90093 0.94155 0.90495 0.83526 0.91585 0.87923 0.76984 0.91293 0.81487 0.81437 0.75568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.07 71.98 0.65 -0.58 16 2 C -0.02 -0.31 3.13 -12.29 -0.04 -0.35 16 3 H 0.16 0.88 8.10 -2.39 -0.02 0.86 16 4 C 0.51 9.80 7.15 87.66 0.63 10.42 16 5 O -0.58 -17.27 15.81 3.10 0.05 -17.22 16 6 N -0.71 -9.86 5.45 -463.04 -2.52 -12.38 16 7 C 0.13 2.11 5.67 86.38 0.49 2.60 16 8 C -0.11 -1.82 5.59 30.59 0.17 -1.65 16 9 C 0.06 1.30 5.69 86.30 0.49 1.79 16 10 N -0.68 -20.29 6.13 -517.95 -3.17 -23.46 16 11 C 0.06 2.15 6.17 85.56 0.53 2.68 16 12 C 0.44 20.65 7.82 87.66 0.69 21.34 16 13 O -0.62 -34.17 15.78 -3.04 -0.05 -34.21 16 14 N -0.57 -29.39 5.29 -306.99 -1.62 -31.02 16 15 C -0.34 -19.12 9.68 84.04 0.81 -18.31 16 16 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 17 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 18 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 19 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.01 -0.24 5.20 24.83 0.13 -0.11 16 24 C -0.22 -3.46 10.78 22.19 0.24 -3.22 16 25 C -0.23 -3.46 10.91 22.19 0.24 -3.22 16 26 C -0.05 -0.84 12.09 66.97 0.81 -0.03 16 27 O -0.19 -4.23 10.36 3.73 0.04 -4.20 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.38 7.56 -2.39 -0.02 0.36 16 31 H 0.42 2.99 7.89 -92.71 -0.73 2.26 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.35 10.59 8.43 -89.69 -0.76 9.83 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.40 19.31 7.90 -92.70 -0.73 18.58 16 42 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.23 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -79.40 388.11 0.15 -79.26 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -1.19 Total: 36.69 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.31 Total: 11.17 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -7.04 Total: -116.22 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: 0.04 Total: -55.63 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -79.40 0.15 -79.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166509981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.963 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds