Wall clock time and date at job start Tue Mar 31 2020 14:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47156 * 2 1 4 4 C 1.34705 * 116.99786 * 180.02562 * 3 2 1 5 5 O 1.21465 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.47733 * 119.99481 * 179.97438 * 4 3 2 7 7 C 1.39935 * 121.15800 * 0.02562 * 6 4 3 8 8 C 1.39294 * 117.80119 * 179.97438 * 7 6 4 9 9 N 1.39364 * 120.01712 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99718 * 0.28436 * 9 8 7 11 11 C 1.52996 * 109.47059 * 179.72110 * 10 9 8 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47008 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00362 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99653 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00420 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46710 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47158 * 119.99784 * 17 15 13 20 20 H 1.48502 * 109.46769 * 240.00242 * 17 15 13 21 21 N 1.32358 * 119.96691 * 0.25669 * 8 7 6 22 22 N 1.28265 * 122.53573 * 359.45588 * 21 8 7 23 23 C 1.32289 * 122.34839 * 0.55886 * 22 21 8 24 24 O 1.35545 * 120.17021 * 179.75141 * 23 22 21 25 25 C 1.42898 * 117.00291 * 359.97205 * 24 23 22 26 26 C 1.52999 * 109.47373 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47028 * 300.00335 * 1 2 3 29 29 H 1.08994 * 109.47362 * 60.00284 * 1 2 3 30 30 H 1.08998 * 109.46775 * 239.99589 * 2 1 3 31 31 H 1.09002 * 109.47215 * 119.99437 * 2 1 3 32 32 H 1.08001 * 121.10316 * 359.95295 * 7 6 4 33 33 H 0.97001 * 119.99836 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46963 * 299.71906 * 10 9 8 35 35 H 1.08994 * 109.47567 * 59.72058 * 10 9 8 36 36 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 37 37 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 38 38 H 1.08990 * 109.47021 * 299.99845 * 12 11 10 39 39 H 1.09002 * 109.46620 * 60.00037 * 12 11 10 40 40 H 0.97000 * 120.00497 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47575 * 300.00341 * 25 24 23 42 42 H 1.09008 * 109.47049 * 60.00114 * 25 24 23 43 43 H 1.09000 * 109.47348 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47142 * 300.00720 * 26 25 24 45 45 H 1.09008 * 109.46847 * 60.00104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0895 0.5822 -0.0005 6 6 3.9141 2.9106 -0.0011 7 6 3.0842 4.0373 -0.0006 8 6 3.6910 5.2911 -0.0007 9 7 2.9085 6.4444 -0.0008 10 6 1.4474 6.3381 0.0056 11 6 0.8342 7.7398 0.0111 12 6 -0.6918 7.6289 0.0171 13 6 -1.2958 9.0095 0.0232 14 1 -0.6554 9.8791 0.0225 15 6 -2.6660 9.1625 0.0287 16 7 -3.4460 8.1035 0.0291 17 14 -3.4148 10.8739 0.0356 18 1 -2.3305 11.8885 0.0345 19 1 -4.2590 11.0497 -1.1734 20 1 -4.2500 11.0439 1.2517 21 7 5.0111 5.3867 -0.0064 22 7 5.7773 4.3581 -0.0017 23 6 5.3038 3.1228 -0.0017 24 8 6.1542 2.0673 -0.0017 25 6 7.5527 2.3609 -0.0023 26 6 8.3482 1.0540 -0.0015 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0088 3.9381 -0.0006 33 1 3.3314 7.3174 -0.0004 34 1 1.1183 5.8011 -0.8841 35 1 1.1262 5.7975 0.8958 36 1 1.1632 8.2768 0.9008 37 1 1.1553 8.2805 -0.8791 38 1 -1.0205 7.0921 -0.8727 39 1 -1.0133 7.0881 0.9072 40 1 -4.4100 8.2111 0.0326 41 1 7.8025 2.9382 -0.8925 42 1 7.8031 2.9387 0.8875 43 1 9.4150 1.2779 -0.0025 44 1 8.0984 0.4770 0.8889 45 1 8.0979 0.4758 -0.8911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:51 Heat of formation + Delta-G solvation = -74.919796 kcal Electronic energy + Delta-G solvation = -26643.965903 eV Core-core repulsion = 22662.489544 eV Total energy + Delta-G solvation = -3981.476360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54620 -40.24974 -38.84819 -36.77941 -36.64230 -33.90815 -33.62226 -32.20473 -31.82676 -31.33896 -29.56962 -26.58618 -26.19735 -24.71682 -23.46035 -23.06643 -22.24818 -21.45912 -20.55433 -18.87009 -18.43340 -17.84638 -17.10309 -16.96092 -16.45056 -16.42422 -15.67770 -15.30303 -14.76293 -14.59512 -14.49547 -14.47113 -14.18165 -14.08428 -13.57160 -13.09320 -13.03085 -12.83588 -12.38097 -12.20812 -12.19126 -12.08589 -11.85433 -11.79369 -11.70410 -11.21781 -10.99200 -10.96463 -10.84435 -10.76640 -10.62618 -10.60932 -10.05467 -9.80466 -9.76518 -9.57210 -9.20438 -8.44513 -7.80537 -6.09394 -4.12175 0.03200 1.02601 2.23752 2.30218 2.65290 3.04355 3.25908 3.34020 3.37717 3.46669 3.95682 4.24172 4.38458 4.43235 4.64382 4.69401 4.72461 4.79877 4.87359 4.92682 5.01052 5.10421 5.18308 5.27145 5.38737 5.42247 5.49130 5.52338 5.55863 5.61641 5.76110 5.77283 5.84103 5.90920 6.14303 6.43518 6.44082 6.85629 6.90975 7.04404 7.48384 7.53577 7.57105 7.64596 7.88846 8.30008 8.59757 8.94403 9.52762 11.01843 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002532 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.830104 B =11055.241661 C =13019.086203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.065 3.935 3 O -0.351 6.351 4 C 0.515 3.485 5 O -0.476 6.476 6 C -0.103 4.103 7 C -0.080 4.080 8 C 0.315 3.685 9 N -0.706 5.706 10 C 0.117 3.883 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.255 5.255 22 N -0.259 5.259 23 C 0.255 3.745 24 O -0.278 6.278 25 C 0.059 3.941 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.171 0.829 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.805 -16.245 -0.074 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.268 6.268 4 C 0.357 3.643 5 O -0.362 6.362 6 C -0.116 4.116 7 C -0.115 4.115 8 C 0.072 3.928 9 N -0.341 5.341 10 C -0.006 4.006 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.109 5.109 22 N -0.114 5.114 23 C 0.065 3.935 24 O -0.182 6.182 25 C -0.017 4.017 26 C -0.207 4.207 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.924 -16.063 -0.079 23.334 hybrid contribution -1.487 0.372 0.011 1.532 sum 15.438 -15.692 -0.068 22.013 Atomic orbital electron populations 1.21839 0.92107 1.03130 1.04143 1.23101 0.95649 0.79346 1.02725 1.86556 1.23037 1.33050 1.84141 1.20480 0.81064 0.88758 0.73969 1.90888 1.60197 1.41385 1.43734 1.19267 0.90872 0.92266 1.09193 1.22280 1.02605 0.89622 0.96983 1.19933 0.90099 0.88212 0.94578 1.44798 1.05742 1.04714 1.78880 1.21863 0.76168 1.01256 1.01309 1.21872 1.00070 0.92410 1.01464 1.19038 0.87050 0.97597 0.97632 1.21225 0.91491 0.92464 1.50883 0.92526 1.25019 0.97409 0.96808 0.95188 1.69959 1.04066 1.28643 1.50634 0.86528 0.79259 0.84546 0.77631 1.19717 1.20976 1.20980 1.72550 1.01726 1.21087 1.15505 1.72982 1.28834 0.94410 1.15210 1.21050 0.87758 0.88415 0.96253 1.86418 1.17539 1.26999 1.87203 1.22743 0.77617 0.98637 1.02654 1.21780 0.98987 0.96449 1.03527 0.90081 0.91095 0.91094 0.91022 0.91022 0.81184 0.75246 0.91747 0.91762 0.92347 0.92345 0.96220 0.96226 0.92949 0.91405 0.91414 0.90301 0.91586 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.07 0.60 6.19 37.16 0.23 0.83 16 3 O -0.35 -4.13 9.62 -40.50 -0.39 -4.52 16 4 C 0.52 6.93 7.92 34.61 0.27 7.21 16 5 O -0.48 -7.22 15.10 -26.36 -0.40 -7.62 16 6 C -0.10 -1.40 5.93 -104.50 -0.62 -2.02 16 7 C -0.08 -1.02 9.00 -38.55 -0.35 -1.37 16 8 C 0.32 4.33 7.74 -154.64 -1.20 3.13 16 9 N -0.71 -9.30 5.74 -60.29 -0.35 -9.65 16 10 C 0.12 1.67 4.92 -4.04 -0.02 1.65 16 11 C -0.12 -2.12 5.27 -26.73 -0.14 -2.27 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -13.95 9.11 -34.44 -0.31 -14.27 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 N -0.25 -3.79 11.50 31.24 0.36 -3.43 16 22 N -0.26 -3.80 10.39 30.74 0.32 -3.48 16 23 C 0.25 3.64 7.59 -16.47 -0.13 3.51 16 24 O -0.28 -3.80 8.35 -39.55 -0.33 -4.13 16 25 C 0.06 0.60 6.05 37.16 0.22 0.83 16 26 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.17 1.91 6.54 -52.49 -0.34 1.57 16 33 H 0.41 5.10 8.60 -40.82 -0.35 4.75 16 34 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 35 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 42 H 0.07 0.67 8.11 -51.92 -0.42 0.25 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -31.25 386.59 -7.73 -38.97 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.98 Total: -0.50 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.51 Total: -2.38 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 1.07 Total: -41.54 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.12 Total: -16.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.25 -7.73 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.947 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds