Wall clock time and date at job start Tue Mar 31 2020 14:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47156 * 2 1 4 4 C 1.34705 * 116.99786 * 180.02562 * 3 2 1 5 5 O 1.21465 * 120.00545 * 359.97438 * 4 3 2 6 6 C 1.47733 * 119.99481 * 179.97438 * 4 3 2 7 7 C 1.39935 * 121.15800 * 0.02562 * 6 4 3 8 8 C 1.39294 * 117.80119 * 179.97438 * 7 6 4 9 9 N 1.39364 * 120.01712 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99718 * 0.28436 * 9 8 7 11 11 C 1.52996 * 109.47059 * 179.72110 * 10 9 8 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47008 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00362 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99653 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00420 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46710 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47158 * 119.99784 * 17 15 13 20 20 H 1.48502 * 109.46769 * 240.00242 * 17 15 13 21 21 N 1.32358 * 119.96691 * 0.25669 * 8 7 6 22 22 N 1.28265 * 122.53573 * 359.45588 * 21 8 7 23 23 C 1.32289 * 122.34839 * 0.55886 * 22 21 8 24 24 O 1.35545 * 120.17021 * 179.75141 * 23 22 21 25 25 C 1.42898 * 117.00291 * 359.97205 * 24 23 22 26 26 C 1.52999 * 109.47373 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47028 * 300.00335 * 1 2 3 29 29 H 1.08994 * 109.47362 * 60.00284 * 1 2 3 30 30 H 1.08998 * 109.46775 * 239.99589 * 2 1 3 31 31 H 1.09002 * 109.47215 * 119.99437 * 2 1 3 32 32 H 1.08001 * 121.10316 * 359.95295 * 7 6 4 33 33 H 0.97001 * 119.99836 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46963 * 299.71906 * 10 9 8 35 35 H 1.08994 * 109.47567 * 59.72058 * 10 9 8 36 36 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 37 37 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 38 38 H 1.08990 * 109.47021 * 299.99845 * 12 11 10 39 39 H 1.09002 * 109.46620 * 60.00037 * 12 11 10 40 40 H 0.97000 * 120.00497 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47575 * 300.00341 * 25 24 23 42 42 H 1.09008 * 109.47049 * 60.00114 * 25 24 23 43 43 H 1.09000 * 109.47348 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47142 * 300.00720 * 26 25 24 45 45 H 1.09008 * 109.46847 * 60.00104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0895 0.5822 -0.0005 6 6 3.9141 2.9106 -0.0011 7 6 3.0842 4.0373 -0.0006 8 6 3.6910 5.2911 -0.0007 9 7 2.9085 6.4444 -0.0008 10 6 1.4474 6.3381 0.0056 11 6 0.8342 7.7398 0.0111 12 6 -0.6918 7.6289 0.0171 13 6 -1.2958 9.0095 0.0232 14 1 -0.6554 9.8791 0.0225 15 6 -2.6660 9.1625 0.0287 16 7 -3.4460 8.1035 0.0291 17 14 -3.4148 10.8739 0.0356 18 1 -2.3305 11.8885 0.0345 19 1 -4.2590 11.0497 -1.1734 20 1 -4.2500 11.0439 1.2517 21 7 5.0111 5.3867 -0.0064 22 7 5.7773 4.3581 -0.0017 23 6 5.3038 3.1228 -0.0017 24 8 6.1542 2.0673 -0.0017 25 6 7.5527 2.3609 -0.0023 26 6 8.3482 1.0540 -0.0015 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0088 3.9381 -0.0006 33 1 3.3314 7.3174 -0.0004 34 1 1.1183 5.8011 -0.8841 35 1 1.1262 5.7975 0.8958 36 1 1.1632 8.2768 0.9008 37 1 1.1553 8.2805 -0.8791 38 1 -1.0205 7.0921 -0.8727 39 1 -1.0133 7.0881 0.9072 40 1 -4.4100 8.2111 0.0326 41 1 7.8025 2.9382 -0.8925 42 1 7.8031 2.9387 0.8875 43 1 9.4150 1.2779 -0.0025 44 1 8.0984 0.4770 0.8889 45 1 8.0979 0.4758 -0.8911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:50 Heat of formation + Delta-G solvation = -93.752332 kcal Electronic energy + Delta-G solvation = -26644.782543 eV Core-core repulsion = 22662.489544 eV Total energy + Delta-G solvation = -3982.293000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.59864 -41.25358 -39.85004 -37.86958 -37.72882 -35.60951 -34.68826 -33.65357 -32.67965 -32.24798 -30.85506 -28.17289 -27.22127 -25.86011 -24.73351 -23.83149 -23.43374 -22.46755 -22.01940 -19.92823 -19.45162 -18.90671 -18.41436 -18.12243 -17.92041 -17.36417 -16.79091 -16.45738 -16.40806 -15.83300 -15.69418 -15.47493 -15.12363 -15.08102 -14.48872 -14.25241 -14.12493 -13.76332 -13.62677 -13.53618 -13.46316 -12.98557 -12.91169 -12.82195 -12.57732 -12.53644 -12.48866 -12.30314 -12.12320 -12.01953 -11.82014 -11.56884 -11.46751 -11.44238 -11.15033 -10.92666 -10.81022 -10.51800 -8.88473 -8.17539 -6.26674 -1.02290 -0.04319 1.25244 1.30811 1.42014 1.43839 1.55268 1.66529 1.97594 2.39051 2.43838 2.92053 3.17043 3.27669 3.37551 3.65566 3.94550 4.02027 4.02440 4.05842 4.06028 4.13910 4.17898 4.27020 4.35082 4.42866 4.59923 4.68865 4.80443 4.84979 4.93105 4.94163 5.00001 5.01780 5.08378 5.20423 5.22053 5.35916 5.55775 5.78383 5.80384 5.89515 6.03413 6.28500 6.48809 6.51950 6.90781 7.42391 7.51678 8.94038 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002532 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.830104 B =11055.241661 C =13019.086203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.352 6.352 4 C 0.520 3.480 5 O -0.498 6.498 6 C -0.111 4.111 7 C -0.068 4.068 8 C 0.313 3.687 9 N -0.700 5.700 10 C 0.130 3.870 11 C -0.105 4.105 12 C 0.026 3.974 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.281 1.281 21 N -0.270 5.270 22 N -0.269 5.269 23 C 0.251 3.749 24 O -0.292 6.292 25 C 0.051 3.949 26 C -0.144 4.144 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.186 0.814 33 H 0.416 0.584 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.001 0.999 39 H 0.000 1.000 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.173 -16.122 -0.076 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.269 6.269 4 C 0.363 3.637 5 O -0.385 6.385 6 C -0.124 4.124 7 C -0.103 4.103 8 C 0.069 3.931 9 N -0.336 5.336 10 C 0.006 3.994 11 C -0.143 4.143 12 C -0.012 4.012 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.207 1.207 21 N -0.123 5.123 22 N -0.124 5.124 23 C 0.060 3.940 24 O -0.195 6.195 25 C -0.023 4.023 26 C -0.201 4.201 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.204 0.796 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.312 -15.934 -0.081 23.529 hybrid contribution -1.594 0.271 0.011 1.617 sum 15.718 -15.662 -0.070 22.190 Atomic orbital electron populations 1.21866 0.90532 1.04557 1.03772 1.23399 0.96818 0.78147 1.03217 1.86557 1.21957 1.34755 1.83630 1.20444 0.81480 0.88398 0.73424 1.90872 1.60791 1.41946 1.44939 1.19382 0.90908 0.92709 1.09415 1.22423 1.03236 0.88990 0.95609 1.19940 0.89908 0.88497 0.94729 1.44577 1.05117 1.04908 1.79007 1.21599 0.76620 0.99081 1.02089 1.21577 0.96221 0.94695 1.01855 1.18931 0.90900 0.95659 0.95716 1.21717 0.91969 0.94018 1.50093 0.92195 1.25887 0.98159 1.00617 0.95027 1.70072 1.04354 1.30773 1.51845 0.85499 0.78475 0.80078 0.77598 1.18727 1.20650 1.20662 1.72486 1.02252 1.21428 1.16180 1.72949 1.28968 0.94540 1.15970 1.21214 0.88295 0.88486 0.95956 1.86425 1.18955 1.27138 1.86999 1.23013 0.76326 1.00167 1.02840 1.21803 1.00080 0.95063 1.03173 0.87768 0.91432 0.91425 0.90572 0.90574 0.79643 0.74687 0.91042 0.91061 0.91955 0.91951 0.98106 0.98117 0.92855 0.91204 0.91215 0.87652 0.91906 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.29 71.98 0.74 -1.21 16 2 C 0.06 0.98 6.19 71.98 0.45 1.42 16 3 O -0.35 -7.96 9.62 -56.15 -0.54 -8.50 16 4 C 0.52 13.69 7.92 70.33 0.56 14.25 16 5 O -0.50 -14.97 15.10 26.76 0.40 -14.56 16 6 C -0.11 -2.95 5.93 -19.78 -0.12 -3.07 16 7 C -0.07 -1.65 9.00 22.94 0.21 -1.44 16 8 C 0.31 8.22 7.74 132.99 1.03 9.25 16 9 N -0.70 -17.29 5.74 -344.65 -1.98 -19.27 16 10 C 0.13 3.49 4.92 86.38 0.42 3.92 16 11 C -0.11 -3.61 5.27 30.59 0.16 -3.45 16 12 C 0.03 1.20 4.97 29.85 0.15 1.35 16 13 C -0.54 -28.70 9.11 25.60 0.23 -28.47 16 14 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 17 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 N -0.27 -7.82 11.50 -55.09 -0.63 -8.45 16 22 N -0.27 -7.79 10.39 -169.58 -1.76 -9.55 16 23 C 0.25 7.08 7.59 85.20 0.65 7.73 16 24 O -0.29 -7.91 8.35 -68.20 -0.57 -8.48 16 25 C 0.05 1.03 6.05 71.98 0.44 1.46 16 26 C -0.14 -2.09 10.28 71.98 0.74 -1.35 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.19 3.84 6.54 -2.91 -0.02 3.82 16 33 H 0.42 9.61 8.60 -92.71 -0.80 8.81 16 34 H 0.07 1.86 7.96 -2.38 -0.02 1.84 16 35 H 0.07 1.85 7.96 -2.39 -0.02 1.83 16 36 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 42 H 0.07 1.35 8.11 -2.38 -0.02 1.33 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -66.38 386.59 3.55 -62.83 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.20 Total: 14.08 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.11 Total: 0.91 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -4.09 Total: -90.88 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.71 Total: -31.54 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.38 3.55 -62.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.922 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds