Wall clock time and date at job start Tue Mar 31 2020 14:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47028 * 2 1 4 4 C 1.53007 * 109.46535 * 240.00345 * 2 1 3 5 5 C 1.53008 * 109.46523 * 175.40491 * 4 2 1 6 6 C 1.50704 * 109.46564 * 184.99736 * 5 4 2 7 7 H 1.07997 * 120.00140 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99569 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00074 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47248 * 89.99686 * 10 8 6 12 12 H 1.48504 * 109.46660 * 209.99883 * 10 8 6 13 13 H 1.48503 * 109.47158 * 329.99386 * 10 8 6 14 14 N 1.46897 * 109.47163 * 120.00458 * 2 1 3 15 15 C 1.46957 * 111.00194 * 58.87413 * 14 2 1 16 16 C 1.53054 * 109.36615 * 176.81224 * 15 14 2 17 17 N 1.46960 * 109.38154 * 58.38573 * 16 15 14 18 18 C 1.39063 * 110.99349 * 176.82554 * 17 16 15 19 19 C 1.39125 * 119.68544 * 179.72918 * 18 17 16 20 20 C 1.38307 * 119.10775 * 179.73163 * 19 18 17 21 21 C 1.38966 * 118.49345 * 0.52544 * 20 19 18 22 22 Cl 1.73603 * 120.34558 * 179.75258 * 21 20 19 23 23 C 1.38119 * 119.30630 * 359.73721 * 21 20 19 24 24 N 1.31986 * 120.83856 * 359.97438 * 23 21 20 25 25 C 1.46953 * 110.87869 * 300.71144 * 17 16 15 26 26 C 1.46951 * 111.00011 * 295.07033 * 14 2 1 27 27 H 1.08995 * 109.47402 * 59.99415 * 1 2 3 28 28 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46790 * 299.99382 * 1 2 3 30 30 H 1.08994 * 109.47074 * 295.39835 * 4 2 1 31 31 H 1.08993 * 109.47169 * 55.40758 * 4 2 1 32 32 H 1.09005 * 109.47107 * 304.99149 * 5 4 2 33 33 H 1.08998 * 109.47133 * 64.99524 * 5 4 2 34 34 H 0.96995 * 119.99950 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.49091 * 56.83930 * 15 14 2 36 36 H 1.09008 * 109.50507 * 296.78965 * 15 14 2 37 37 H 1.08997 * 109.48682 * 178.36526 * 16 15 14 38 38 H 1.08996 * 109.48658 * 298.40611 * 16 15 14 39 39 H 1.07997 * 120.44979 * 359.97438 * 19 18 17 40 40 H 1.07997 * 120.75206 * 180.26419 * 20 19 18 41 41 H 1.08002 * 119.58682 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.47796 * 299.32517 * 25 17 16 43 43 H 1.08999 * 109.50863 * 179.27608 * 25 17 16 44 44 H 1.08997 * 109.49045 * 303.15456 * 26 14 2 45 45 H 1.08996 * 109.49060 * 63.20027 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5656 -0.6219 -1.3085 6 6 4.0585 -1.2243 -2.5990 7 1 3.3541 -1.6370 -3.3060 8 6 5.4088 -1.2493 -2.8766 9 7 6.2666 -0.7472 -2.0154 10 14 6.0198 -1.9966 -4.4759 11 1 6.0767 -0.9456 -5.5234 12 1 7.3765 -2.5646 -4.2702 13 1 5.0921 -3.0738 -4.9052 14 7 2.0197 -0.6926 1.1993 15 6 1.5266 -2.0761 1.2468 16 6 2.1216 -2.7855 2.4656 17 7 1.7495 -2.0546 3.6850 18 6 2.2136 -2.7105 4.8201 19 6 1.9658 -2.1699 6.0779 20 6 2.4280 -2.8350 7.1990 21 6 3.1353 -4.0183 7.0233 22 17 3.7429 -4.8891 8.3967 23 6 3.3495 -4.4943 5.7445 24 7 2.8912 -3.8406 4.6936 25 6 2.2423 -0.6710 3.6373 26 6 1.6472 0.0384 2.4185 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7454 -1.7699 -1.2092 31 1 1.6109 -0.2571 -2.1373 32 1 3.8637 0.4254 -1.2592 33 1 3.9978 -1.1627 -0.4666 34 1 7.2165 -0.7645 -2.2108 35 1 1.8258 -2.6001 0.3391 36 1 0.4392 -2.0726 1.3230 37 1 1.7345 -3.8030 2.5190 38 1 3.2075 -2.8138 2.3756 39 1 1.4166 -1.2454 6.1777 40 1 2.2470 -2.4416 8.1883 41 1 3.8982 -5.4137 5.6028 42 1 3.3296 -0.6748 3.5608 43 1 1.9434 -0.1467 4.5450 44 1 2.0343 1.0559 2.3651 45 1 0.5613 0.0666 2.5081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:21 Heat of formation + Delta-G solvation = 25.135470 kcal Electronic energy + Delta-G solvation = -25144.371348 eV Core-core repulsion = 21607.942875 eV Total energy + Delta-G solvation = -3536.428473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88164 -40.28761 -38.01085 -37.24955 -35.34651 -33.70672 -33.43550 -32.00840 -31.29250 -30.15054 -27.26802 -26.81822 -25.59197 -23.82630 -23.72279 -23.03366 -21.58551 -20.13970 -18.81580 -18.36080 -17.77961 -17.48483 -16.90309 -16.51987 -16.20565 -15.85698 -15.55874 -15.50108 -15.28871 -14.78296 -14.50589 -14.38610 -14.28198 -14.09577 -13.58919 -13.29823 -13.18809 -13.16006 -12.97385 -12.80545 -12.74611 -12.42022 -12.34480 -12.23949 -12.04878 -11.79659 -11.67833 -11.37030 -11.19796 -10.95337 -10.89685 -10.80861 -10.56002 -10.48924 -9.15124 -9.01499 -8.13939 -6.24357 -0.11603 0.15252 1.05504 1.39241 1.40787 1.51505 2.31984 2.43173 2.70600 2.99611 3.18510 3.33323 3.75075 3.78461 3.89282 3.94650 3.98182 4.15759 4.27652 4.29577 4.30813 4.40692 4.48210 4.52566 4.62083 4.72335 4.77191 4.78194 4.84297 4.88355 4.92470 5.01057 5.02730 5.07988 5.15928 5.27805 5.33656 5.47270 5.55151 5.59437 5.88900 5.99252 6.01518 6.25360 6.31446 6.35395 6.84488 6.95751 7.43921 8.97150 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.002798 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.450592 B =10005.470298 C =11451.354489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 H 0.071 0.929 4 C -0.094 4.094 5 C 0.044 3.956 6 C -0.542 4.542 7 H 0.055 0.945 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.548 5.548 15 C 0.060 3.940 16 C 0.082 3.918 17 N -0.472 5.472 18 C 0.299 3.701 19 C -0.170 4.170 20 C -0.038 4.038 21 C -0.123 4.123 22 Cl -0.053 7.053 23 C 0.130 3.870 24 N -0.535 5.535 25 C 0.066 3.934 26 C 0.057 3.943 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.053 0.947 32 H -0.020 1.020 33 H -0.004 1.004 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.032 0.968 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.553 -2.208 21.380 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.132 4.132 5 C 0.007 3.993 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 N -0.273 5.273 15 C -0.069 4.069 16 C -0.046 4.046 17 N -0.190 5.190 18 C 0.068 3.932 19 C -0.192 4.192 20 C -0.064 4.064 21 C -0.153 4.153 22 Cl -0.025 7.025 23 C -0.028 4.028 24 N -0.250 5.250 25 C -0.060 4.060 26 C -0.071 4.071 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.072 0.928 32 H -0.002 1.002 33 H 0.015 0.985 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.189 0.811 40 H 0.193 0.807 41 H 0.190 0.810 42 H 0.051 0.949 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.193 -2.528 20.615 24.084 hybrid contribution 0.747 -0.314 -0.156 0.826 sum -11.445 -2.842 20.459 23.615 Atomic orbital electron populations 1.22354 0.95723 1.02248 1.02788 1.21657 0.93398 0.97420 0.89388 0.91059 1.21579 0.96719 0.99130 0.95774 1.18760 0.91886 0.94105 0.94531 1.21815 0.92377 1.38598 1.05210 0.92643 1.25942 0.97418 0.96120 1.00365 1.70123 1.02313 1.47380 1.37438 0.85544 0.77554 0.78895 0.79626 1.19750 1.20967 1.18856 1.62231 1.60345 1.02250 1.02481 1.22152 0.97854 0.89575 0.97278 1.21865 0.98424 0.97142 0.87128 1.59426 1.54241 1.04092 1.01205 1.20306 0.90022 0.91012 0.91909 1.21825 1.04111 1.03561 0.89721 1.21715 0.92351 0.91347 1.01029 1.21963 1.05625 0.97900 0.89842 1.98374 1.86556 1.75660 1.41880 1.22775 0.95242 0.98826 0.85967 1.67773 1.12201 1.10597 1.34420 1.22430 0.97695 0.85438 1.00418 1.22224 0.99395 0.97569 0.87922 0.91533 0.92486 0.91260 0.93193 0.92840 1.00153 0.98518 0.93095 0.91181 0.92755 0.89689 0.95224 0.81134 0.80672 0.81011 0.94914 0.86221 0.89170 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.49 71.98 0.61 -3.64 16 2 C 0.09 2.91 2.36 44.92 0.11 3.02 16 3 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 4 C -0.09 -3.87 4.44 30.60 0.14 -3.74 16 5 C 0.04 2.39 4.80 29.85 0.14 2.54 16 6 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 7 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 8 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 9 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 10 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 14 N -0.55 -17.63 4.23 -870.47 -3.68 -21.31 16 15 C 0.06 1.83 4.82 86.31 0.42 2.25 16 16 C 0.08 2.49 4.79 86.31 0.41 2.90 16 17 N -0.47 -11.87 4.74 -701.33 -3.32 -15.19 16 18 C 0.30 7.20 6.41 133.05 0.85 8.05 16 19 C -0.17 -2.87 9.21 22.50 0.21 -2.66 16 20 C -0.04 -0.56 9.97 22.46 0.22 -0.34 16 21 C -0.12 -2.20 6.34 22.42 0.14 -2.06 16 22 Cl -0.05 -0.84 28.98 -2.72 -0.08 -0.91 16 23 C 0.13 2.83 10.97 84.64 0.93 3.76 16 24 N -0.54 -14.38 8.70 -193.15 -1.68 -16.06 16 25 C 0.07 1.50 5.36 86.31 0.46 1.96 16 26 C 0.06 1.37 5.25 86.31 0.45 1.82 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.40 6.45 -2.39 -0.02 1.38 16 29 H 0.07 1.44 6.59 -2.39 -0.02 1.43 16 30 H 0.05 2.02 6.13 -2.39 -0.01 2.01 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 33 H 0.00 -0.22 7.88 -2.39 -0.02 -0.24 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.07 2.48 6.08 -2.39 -0.01 2.47 16 36 H 0.05 1.49 6.47 -2.38 -0.02 1.47 16 37 H 0.08 2.54 7.82 -2.39 -0.02 2.52 16 38 H 0.03 1.09 8.05 -2.39 -0.02 1.07 16 39 H 0.17 1.90 7.16 -2.91 -0.02 1.88 16 40 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.12 1.83 6.78 -2.39 -0.02 1.81 16 44 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 45 H 0.06 1.26 6.59 -2.39 -0.02 1.24 16 Total: -1.00 -70.18 365.55 0.32 -69.86 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.98 Total: 11.56 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 5.79 Total: -17.22 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -8.40 Total: -110.91 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.91 kcal Total: -70.18 0.32 -69.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.992 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds