Wall clock time and date at job start Tue Mar 31 2020 14:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47446 * 2 1 4 4 C 1.53004 * 109.47112 * 119.99899 * 2 1 3 5 5 C 1.53001 * 109.47153 * 183.92636 * 4 2 1 6 6 C 1.50703 * 109.47201 * 175.93572 * 5 4 2 7 7 H 1.08005 * 119.99796 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00251 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99390 * 359.97438 * 8 6 5 10 10 Si 1.86789 * 120.00112 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47286 * 119.99898 * 10 8 6 13 13 H 1.48498 * 109.47467 * 240.00064 * 10 8 6 14 14 N 1.46898 * 109.47510 * 239.99685 * 2 1 3 15 15 C 1.46965 * 111.00017 * 308.55415 * 14 2 1 16 16 C 1.53043 * 109.36697 * 183.18525 * 15 14 2 17 17 N 1.46955 * 109.36526 * 301.60248 * 16 15 14 18 18 C 1.39073 * 111.00261 * 183.18965 * 17 16 15 19 19 C 1.39117 * 119.69345 * 179.97438 * 18 17 16 20 20 C 1.38300 * 119.10778 * 179.97438 * 19 18 17 21 21 C 1.38967 * 118.50079 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 120.35335 * 179.97438 * 21 20 19 23 23 C 1.38132 * 119.29858 * 359.97438 * 21 20 19 24 24 N 1.31978 * 120.83856 * 0.02562 * 23 21 20 25 25 C 1.46948 * 110.88325 * 59.31793 * 17 16 15 26 26 C 1.46954 * 110.99896 * 72.35097 * 14 2 1 27 27 H 1.08999 * 109.46585 * 60.00483 * 1 2 3 28 28 H 1.08999 * 109.46714 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.46815 * 300.00238 * 1 2 3 30 30 H 1.09001 * 109.46971 * 303.92009 * 4 2 1 31 31 H 1.08993 * 109.47374 * 63.91850 * 4 2 1 32 32 H 1.09000 * 109.46780 * 295.93192 * 5 4 2 33 33 H 1.08991 * 109.47580 * 55.93229 * 5 4 2 34 34 H 0.97003 * 119.99584 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.48608 * 63.21500 * 15 14 2 36 36 H 1.09000 * 109.48479 * 303.15903 * 15 14 2 37 37 H 1.09002 * 109.49190 * 181.62906 * 16 15 14 38 38 H 1.08999 * 109.49113 * 61.56389 * 16 15 14 39 39 H 1.08004 * 120.44675 * 0.02562 * 19 18 17 40 40 H 1.08003 * 120.75074 * 180.27078 * 20 19 18 41 41 H 1.08003 * 119.57746 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.49270 * 60.64777 * 25 17 16 43 43 H 1.09001 * 109.49103 * 180.71509 * 25 17 16 44 44 H 1.08999 * 109.48989 * 296.77972 * 26 14 2 45 45 H 1.08996 * 109.49002 * 56.83123 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5668 -0.6363 1.2997 6 6 4.0627 -1.2590 2.5793 7 1 3.3591 -1.6734 3.2862 8 6 5.4145 -1.2995 2.8477 9 7 6.2711 -0.7952 1.9867 10 14 6.0290 -2.0707 4.4341 11 1 4.8726 -2.5607 5.2268 12 1 6.9289 -3.2081 4.1155 13 1 6.7738 -1.0559 5.2218 14 7 2.0197 -0.6925 -1.1994 15 6 1.3891 -2.0126 -1.3397 16 6 1.9828 -2.7322 -2.5530 17 7 1.7663 -1.9176 -3.7568 18 6 2.2298 -2.5732 -4.8923 19 6 2.1137 -1.9620 -6.1366 20 6 2.5792 -2.6247 -7.2577 21 6 3.1474 -3.8826 -7.0963 22 17 3.7466 -4.7574 -8.4707 23 6 3.2304 -4.4294 -5.8305 24 7 2.7775 -3.7731 -4.7789 25 6 2.3968 -0.5977 -3.6164 26 6 1.8032 0.1220 -2.4031 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8899 30 1 1.6204 -0.2495 2.1379 31 1 1.7352 -1.7671 1.2149 32 1 3.9887 -1.1705 0.4484 33 1 3.8741 0.4087 1.2612 34 1 7.2222 -0.8241 2.1753 35 1 0.3151 -1.8895 -1.4795 36 1 1.5741 -2.6012 -0.4412 37 1 1.4960 -3.6997 -2.6761 38 1 3.0520 -2.8795 -2.4011 39 1 1.6668 -0.9828 -6.2258 40 1 2.5063 -2.1731 -8.2361 41 1 3.6708 -5.4069 -5.7000 42 1 3.4708 -0.7207 -3.4766 43 1 2.2119 -0.0089 -4.5149 44 1 0.7339 0.2693 -2.5551 45 1 2.2897 1.0896 -2.2799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:24 Heat of formation + Delta-G solvation = 24.453436 kcal Electronic energy + Delta-G solvation = -25130.656826 eV Core-core repulsion = 21594.198778 eV Total energy + Delta-G solvation = -3536.458048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.87896 -40.27011 -38.00360 -37.24804 -35.35143 -33.70818 -33.45212 -31.97168 -31.32793 -30.14042 -27.26969 -26.79491 -25.61189 -23.82452 -23.71920 -23.04801 -21.54089 -20.17342 -18.81512 -18.36030 -17.78062 -17.48486 -16.89941 -16.51927 -16.18088 -15.86465 -15.55481 -15.50216 -15.27099 -14.77710 -14.49831 -14.36946 -14.29401 -14.11003 -13.59563 -13.32226 -13.16725 -13.15694 -12.94334 -12.82954 -12.77875 -12.41182 -12.32677 -12.23806 -12.06678 -11.81240 -11.63996 -11.38847 -11.19054 -10.96223 -10.89886 -10.80767 -10.56123 -10.49220 -9.15225 -9.00938 -8.13961 -6.24050 -0.11780 0.15124 1.05462 1.39113 1.39611 1.52473 2.31631 2.43195 2.70691 2.99248 3.18598 3.33294 3.75004 3.78349 3.89353 3.94424 3.98161 4.15282 4.28380 4.29662 4.30563 4.41627 4.48412 4.52475 4.61968 4.72571 4.77151 4.78219 4.84670 4.88132 4.92221 5.00944 5.04123 5.07498 5.14825 5.27753 5.32884 5.47890 5.54984 5.59821 5.89628 5.99299 6.02553 6.26439 6.31637 6.35764 6.84108 6.96260 7.44129 8.97332 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002793 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.103844 B =10023.617440 C =11427.105310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.071 0.929 4 C -0.091 4.091 5 C 0.044 3.956 6 C -0.540 4.540 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.278 1.278 14 N -0.549 5.549 15 C 0.060 3.940 16 C 0.081 3.919 17 N -0.472 5.472 18 C 0.299 3.701 19 C -0.170 4.170 20 C -0.039 4.039 21 C -0.123 4.123 22 Cl -0.053 7.053 23 C 0.130 3.870 24 N -0.535 5.535 25 C 0.066 3.934 26 C 0.058 3.942 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.047 0.953 32 H -0.003 1.003 33 H -0.020 1.020 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.031 0.969 43 H 0.119 0.881 44 H 0.059 0.941 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 -1.644 -21.413 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.129 4.129 5 C 0.007 3.993 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.204 1.204 14 N -0.274 5.274 15 C -0.068 4.068 16 C -0.046 4.046 17 N -0.189 5.189 18 C 0.067 3.933 19 C -0.192 4.192 20 C -0.065 4.065 21 C -0.153 4.153 22 Cl -0.025 7.025 23 C -0.028 4.028 24 N -0.249 5.249 25 C -0.059 4.059 26 C -0.070 4.070 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.016 0.984 33 H -0.002 1.002 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.188 0.812 40 H 0.193 0.807 41 H 0.190 0.810 42 H 0.050 0.950 43 H 0.137 0.863 44 H 0.077 0.923 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.924 -2.010 -20.651 23.931 hybrid contribution 0.801 -0.289 0.124 0.861 sum -11.123 -2.299 -20.527 23.460 Atomic orbital electron populations 1.22348 0.95668 1.02341 1.02675 1.21653 0.93431 0.97278 0.89489 0.91074 1.21525 0.96680 0.99014 0.95702 1.18758 0.91914 0.94065 0.94570 1.21846 0.92276 1.37980 1.05765 0.92700 1.25937 0.97450 0.96224 1.00271 1.70130 1.02242 1.47377 1.37511 0.85493 0.78419 0.78159 0.79540 1.18646 1.20636 1.20385 1.62216 1.58867 1.03436 1.02855 1.22159 0.96966 0.90561 0.97098 1.21881 0.99410 0.96030 0.87325 1.59433 1.52730 1.04883 1.01888 1.20305 0.90395 0.90378 0.92181 1.21820 1.04102 1.03364 0.89949 1.21712 0.92456 0.91463 1.00839 1.21966 1.06701 0.96602 0.90066 1.98374 1.86717 1.75608 1.41758 1.22782 0.94378 0.99650 0.85986 1.67769 1.12948 1.10384 1.33818 1.22416 0.96160 0.87178 1.00193 1.22200 1.00138 0.96465 0.88181 0.91487 0.92276 0.91527 0.92908 0.93454 0.98427 1.00165 0.93114 0.92520 0.91163 0.89551 0.95239 0.81187 0.80702 0.80958 0.95003 0.86296 0.92298 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.39 71.98 0.60 -3.64 16 2 C 0.09 2.91 2.31 44.92 0.10 3.02 16 3 H 0.07 2.39 7.98 -2.39 -0.02 2.37 16 4 C -0.09 -3.76 4.57 30.60 0.14 -3.62 16 5 C 0.04 2.38 4.80 29.85 0.14 2.52 16 6 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 7 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.93 -58.58 13.29 21.45 0.28 -58.30 16 10 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 11 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 N -0.55 -17.65 4.12 -870.47 -3.59 -21.24 16 15 C 0.06 1.81 4.70 86.31 0.41 2.21 16 16 C 0.08 2.42 4.79 86.31 0.41 2.83 16 17 N -0.47 -11.83 4.73 -701.37 -3.32 -15.15 16 18 C 0.30 7.19 6.40 133.04 0.85 8.04 16 19 C -0.17 -2.89 9.21 22.50 0.21 -2.68 16 20 C -0.04 -0.57 9.97 22.46 0.22 -0.35 16 21 C -0.12 -2.20 6.34 22.42 0.14 -2.06 16 22 Cl -0.05 -0.83 28.98 -2.72 -0.08 -0.91 16 23 C 0.13 2.82 10.97 84.65 0.93 3.75 16 24 N -0.53 -14.26 8.71 -193.14 -1.68 -15.94 16 25 C 0.07 1.53 5.37 86.31 0.46 2.00 16 26 C 0.06 1.43 5.36 86.31 0.46 1.89 16 27 H 0.07 1.41 6.85 -2.39 -0.02 1.40 16 28 H 0.06 1.45 6.39 -2.39 -0.02 1.43 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.93 6.42 -2.39 -0.02 1.92 16 32 H 0.00 -0.16 7.84 -2.39 -0.02 -0.18 16 33 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 34 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.06 1.50 6.41 -2.38 -0.02 1.49 16 36 H 0.07 2.38 6.36 -2.39 -0.02 2.36 16 37 H 0.09 2.51 7.82 -2.39 -0.02 2.49 16 38 H 0.03 1.07 8.05 -2.39 -0.02 1.05 16 39 H 0.17 1.93 7.17 -2.91 -0.02 1.91 16 40 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.12 1.88 6.79 -2.39 -0.02 1.86 16 44 H 0.06 1.26 6.85 -2.39 -0.02 1.24 16 45 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 Total: -1.00 -70.17 366.16 0.40 -69.77 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.98 Total: 11.25 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.79 Total: -17.18 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -8.31 Total: -110.63 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -70.17 0.40 -69.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.222 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds