Wall clock time and date at job start Tue Mar 31 2020 14:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47371 * 2 1 4 4 C 1.53001 * 109.47418 * 239.99220 * 2 1 3 5 5 C 1.52996 * 109.46898 * 174.99936 * 4 2 1 6 6 C 1.50708 * 109.46861 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99749 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00056 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99737 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00058 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47044 * 60.00264 * 10 8 6 12 12 H 1.48503 * 109.47142 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47362 * 300.00044 * 10 8 6 14 14 N 1.46910 * 109.46723 * 119.99226 * 2 1 3 15 15 C 1.46950 * 111.00253 * 300.00106 * 14 2 1 16 16 C 1.53049 * 109.36564 * 183.18652 * 15 14 2 17 17 N 1.46956 * 109.36454 * 301.60275 * 16 15 14 18 18 C 1.39070 * 110.99865 * 183.18576 * 17 16 15 19 19 N 1.32394 * 119.71209 * 296.36820 * 18 17 16 20 20 C 1.31961 * 121.63492 * 179.97438 * 19 18 17 21 21 C 1.38050 * 120.87960 * 0.02562 * 20 19 18 22 22 C 1.38847 * 119.33669 * 0.02562 * 21 20 19 23 23 C 1.38425 * 118.49562 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 120.46311 * 179.97438 * 23 22 21 25 25 C 1.46950 * 110.88300 * 59.31743 * 17 16 15 26 26 C 1.46962 * 110.99466 * 63.80376 * 14 2 1 27 27 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47254 * 300.00846 * 1 2 3 29 29 H 1.09010 * 109.46680 * 60.00585 * 1 2 3 30 30 H 1.08993 * 109.46956 * 295.00475 * 4 2 1 31 31 H 1.09000 * 109.46516 * 55.00810 * 4 2 1 32 32 H 1.08999 * 109.47972 * 300.00425 * 5 4 2 33 33 H 1.09005 * 109.47052 * 60.00661 * 5 4 2 34 34 H 0.97004 * 119.99402 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.48698 * 63.22012 * 15 14 2 36 36 H 1.09003 * 109.50859 * 303.16781 * 15 14 2 37 37 H 1.08997 * 109.49036 * 181.63476 * 16 15 14 38 38 H 1.09004 * 109.50186 * 61.57513 * 16 15 14 39 39 H 1.07997 * 119.56154 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.33629 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.75568 * 179.72571 * 22 21 20 42 42 H 1.09002 * 109.49427 * 60.64908 * 25 17 16 43 43 H 1.09001 * 109.49073 * 180.71234 * 25 17 16 44 44 H 1.08994 * 109.48740 * 296.77212 * 26 14 2 45 45 H 1.08999 * 109.49135 * 56.82051 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5442 7 1 3.3687 -1.8033 -3.2136 8 6 5.4185 -1.3604 -2.8155 9 7 6.2691 -0.7764 -1.9999 10 14 6.0411 -2.2399 -4.3413 11 1 5.4496 -1.6125 -5.5502 12 1 7.5212 -2.1362 -4.4031 13 1 5.6476 -3.6706 -4.2833 14 7 2.0196 -0.6924 1.1996 15 6 1.5484 -0.0259 2.4216 16 6 2.1433 -0.7283 3.6444 17 7 1.7478 -2.1436 3.6338 18 6 2.2113 -2.7990 4.7694 19 7 3.5141 -2.9138 4.9750 20 6 3.9954 -3.5275 6.0395 21 6 3.1507 -4.0763 6.9834 22 6 1.7771 -3.9791 6.8055 23 6 1.3013 -3.3297 5.6794 24 17 -0.4064 -3.1792 5.4058 25 6 2.2190 -2.8100 2.4118 26 6 1.6240 -2.1077 1.1890 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.7516 -1.7716 -1.2054 31 1 1.6055 -0.2619 -2.1369 32 1 3.8533 0.4368 -1.3572 33 1 3.9994 -1.0729 -0.4257 34 1 7.2199 -0.8028 -2.1906 35 1 0.4605 -0.0763 2.4668 36 1 1.8640 1.0174 2.4121 37 1 1.7721 -0.2537 4.5527 38 1 3.2304 -0.6543 3.6134 39 1 5.0644 -3.6021 6.1736 40 1 3.5541 -4.5770 7.8511 41 1 1.0953 -4.4040 7.5273 42 1 3.3069 -2.7597 2.3665 43 1 1.9030 -3.8532 2.4216 44 1 0.5370 -2.1817 1.2203 45 1 1.9948 -2.5822 0.2805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:27 Heat of formation + Delta-G solvation = 26.225075 kcal Electronic energy + Delta-G solvation = -25535.798231 eV Core-core repulsion = 21999.417006 eV Total energy + Delta-G solvation = -3536.381224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77269 -40.28076 -37.65122 -37.49076 -35.34451 -33.62795 -33.12268 -32.04716 -31.35678 -30.22059 -27.25521 -26.80828 -24.75692 -24.59147 -23.73158 -23.04434 -21.54849 -20.06229 -18.66902 -18.34737 -17.83048 -17.35431 -16.88328 -16.54160 -16.34547 -15.87100 -15.73051 -15.30144 -14.93984 -14.86285 -14.50753 -14.35000 -14.26798 -13.99642 -13.45762 -13.24817 -13.15645 -13.13095 -12.97885 -12.86455 -12.74540 -12.42216 -12.36449 -12.06471 -12.02643 -11.78846 -11.68492 -11.37718 -11.19174 -10.89579 -10.77935 -10.69231 -10.47896 -9.81944 -9.75971 -9.00297 -8.12857 -6.23720 -0.13744 0.11192 1.13279 1.39365 1.42768 1.50374 2.43755 2.49261 2.57495 3.00053 3.19359 3.48426 3.82701 3.84018 3.94247 3.96888 4.11156 4.17432 4.27608 4.32100 4.34949 4.37863 4.43893 4.49327 4.53360 4.73640 4.78511 4.81800 4.88976 4.91065 4.99133 5.02063 5.04930 5.08851 5.17313 5.33926 5.39521 5.47351 5.59986 5.68688 5.88802 6.02117 6.08876 6.27187 6.33877 6.35589 6.82630 6.96185 7.44468 8.98136 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003264 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.577448 B = 8577.010498 C = 9705.097439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 H 0.069 0.931 4 C -0.094 4.094 5 C 0.042 3.958 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.544 5.544 15 C 0.063 3.937 16 C 0.073 3.927 17 N -0.477 5.477 18 C 0.280 3.720 19 N -0.529 5.529 20 C 0.099 3.901 21 C -0.147 4.147 22 C -0.064 4.064 23 C -0.071 4.071 24 Cl -0.043 7.043 25 C 0.077 3.923 26 C 0.065 3.935 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.053 0.947 32 H -0.022 1.022 33 H -0.001 1.001 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.177 0.823 42 H 0.028 0.972 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 -5.910 21.633 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.132 4.132 5 C 0.005 3.995 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.193 1.193 14 N -0.269 5.269 15 C -0.065 4.065 16 C -0.054 4.054 17 N -0.201 5.201 18 C 0.051 3.949 19 N -0.242 5.242 20 C -0.059 4.059 21 C -0.167 4.167 22 C -0.090 4.090 23 C -0.101 4.101 24 Cl -0.014 7.014 25 C -0.051 4.051 26 C -0.063 4.063 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.072 0.928 32 H -0.004 1.004 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.197 0.803 40 H 0.202 0.798 41 H 0.194 0.806 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.390 -5.485 20.993 24.986 hybrid contribution 0.255 -0.513 -0.458 0.733 sum -12.135 -5.998 20.534 24.595 Atomic orbital electron populations 1.22344 0.95755 1.02221 1.02687 1.21665 0.93396 0.97472 0.89459 0.91324 1.21593 0.96734 0.99220 0.95612 1.18780 0.91882 0.93966 0.94846 1.21770 0.92470 1.34469 1.09377 0.92580 1.25948 0.97430 0.96493 0.99929 1.70134 1.02528 1.45614 1.38982 0.85588 0.76989 0.79268 0.79709 1.19164 1.20973 1.19306 1.62220 1.60263 1.02249 1.02145 1.22137 0.98407 0.97882 0.88104 1.22081 0.98324 0.86205 0.98755 1.60462 1.56705 1.03011 0.99895 1.19839 0.87049 0.95406 0.92583 1.67954 1.15228 1.17289 1.23696 1.23239 1.02356 0.91977 0.88358 1.22563 0.92416 1.00088 1.01593 1.21944 0.97181 0.94940 0.94963 1.21848 0.86665 1.03862 0.97774 1.98371 1.10002 1.96617 1.96379 1.21993 0.97648 0.97479 0.87943 1.22067 0.98351 0.88941 0.96977 0.92490 0.91457 0.91478 0.92888 0.92839 1.00399 0.98223 0.93096 0.92600 0.89841 0.89364 0.95062 0.80278 0.79754 0.80604 0.95338 0.90263 0.92891 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 8.50 71.98 0.61 -3.96 16 2 C 0.09 3.05 2.43 44.91 0.11 3.16 16 3 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.09 -3.96 4.32 30.59 0.13 -3.83 16 5 C 0.04 2.33 4.86 29.85 0.15 2.48 16 6 C -0.54 -32.09 9.11 25.60 0.23 -31.85 16 7 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 9 N -0.93 -59.25 13.29 21.45 0.28 -58.96 16 10 Si 0.96 45.87 29.54 68.60 2.03 47.89 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 N -0.54 -18.93 4.19 -870.46 -3.65 -22.58 16 15 C 0.06 1.78 5.13 86.31 0.44 2.22 16 16 C 0.07 2.10 5.45 86.31 0.47 2.57 16 17 N -0.48 -13.54 4.09 -701.25 -2.87 -16.41 16 18 C 0.28 7.38 5.34 133.06 0.71 8.09 16 19 N -0.53 -14.41 9.64 -193.15 -1.86 -16.27 16 20 C 0.10 1.82 11.17 84.63 0.95 2.76 16 21 C -0.15 -1.76 10.10 22.37 0.23 -1.54 16 22 C -0.06 -0.89 9.97 22.46 0.22 -0.67 16 23 C -0.07 -1.48 6.36 22.55 0.14 -1.34 16 24 Cl -0.04 -0.86 28.47 -2.72 -0.08 -0.94 16 25 C 0.08 2.47 5.42 86.31 0.47 2.94 16 26 C 0.06 2.14 4.84 86.31 0.42 2.56 16 27 H 0.06 1.50 6.56 -2.39 -0.02 1.48 16 28 H 0.07 1.58 6.48 -2.39 -0.02 1.56 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.05 2.19 6.00 -2.39 -0.01 2.18 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 33 H 0.00 -0.04 7.75 -2.38 -0.02 -0.06 16 34 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 35 H 0.06 1.44 6.48 -2.39 -0.02 1.42 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.09 2.19 8.13 -2.39 -0.02 2.17 16 38 H 0.03 1.07 7.99 -2.38 -0.02 1.05 16 39 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.03 1.10 7.93 -2.39 -0.02 1.09 16 43 H 0.08 2.38 8.13 -2.39 -0.02 2.36 16 44 H 0.05 1.58 6.57 -2.39 -0.02 1.57 16 45 H 0.07 2.69 5.95 -2.39 -0.01 2.68 16 Total: -1.00 -72.49 367.91 0.57 -71.92 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.97 Total: 11.32 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 5.74 Total: -15.97 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -8.09 Total: -114.22 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -72.49 0.57 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds