Wall clock time and date at job start Tue Mar 31 2020 14:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47201 * 2 1 4 4 C 1.53000 * 109.47573 * 120.00730 * 2 1 3 5 5 C 1.52992 * 109.47368 * 183.76563 * 4 2 1 6 6 C 1.50697 * 109.47106 * 175.02728 * 5 4 2 7 7 H 1.08005 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00338 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00497 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99778 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46961 * 90.00108 * 10 8 6 12 12 H 1.48491 * 109.47209 * 210.00002 * 10 8 6 13 13 H 1.48504 * 109.47330 * 330.00427 * 10 8 6 14 14 N 1.46902 * 109.46960 * 240.00602 * 2 1 3 15 15 C 1.46955 * 111.00031 * 72.43637 * 14 2 1 16 16 C 1.53057 * 109.36475 * 176.81124 * 15 14 2 17 17 N 1.46952 * 109.36193 * 58.40197 * 16 15 14 18 18 C 1.39074 * 110.99896 * 176.80966 * 17 16 15 19 19 N 1.32397 * 119.70748 * 68.01638 * 18 17 16 20 20 C 1.31964 * 121.63498 * 180.02562 * 19 18 17 21 21 C 1.38049 * 120.87451 * 359.97438 * 20 19 18 22 22 C 1.38844 * 119.33973 * 359.97438 * 21 20 19 23 23 C 1.38426 * 118.49350 * 359.73630 * 22 21 20 24 24 Cl 1.73593 * 120.45955 * 180.25730 * 23 22 21 25 25 C 1.46955 * 110.88095 * 300.67846 * 17 16 15 26 26 C 1.46953 * 111.00108 * 308.63533 * 14 2 1 27 27 H 1.09000 * 109.47519 * 59.99579 * 1 2 3 28 28 H 1.09003 * 109.47495 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47325 * 299.99066 * 1 2 3 30 30 H 1.09003 * 109.46358 * 303.76857 * 4 2 1 31 31 H 1.09000 * 109.46793 * 63.75930 * 4 2 1 32 32 H 1.09000 * 109.47207 * 295.02719 * 5 4 2 33 33 H 1.09001 * 109.47282 * 55.02882 * 5 4 2 34 34 H 0.96994 * 120.00192 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.49299 * 296.77791 * 15 14 2 36 36 H 1.09004 * 109.49195 * 56.84287 * 15 14 2 37 37 H 1.08998 * 109.49002 * 298.43413 * 16 15 14 38 38 H 1.08999 * 109.50494 * 178.37840 * 16 15 14 39 39 H 1.08000 * 119.56296 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.32921 * 179.97438 * 21 20 19 41 41 H 1.08007 * 120.75121 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.48743 * 299.35149 * 25 17 16 43 43 H 1.09002 * 109.50724 * 179.30339 * 25 17 16 44 44 H 1.08999 * 109.49070 * 303.15975 * 26 14 2 45 45 H 1.09001 * 109.48973 * 63.20030 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5670 -0.6398 1.2973 6 6 4.0618 -1.2426 2.5869 7 1 3.3575 -1.6440 3.3005 8 6 5.4135 -1.2815 2.8558 9 7 5.8453 -1.8079 3.9809 10 14 6.6317 -0.5877 1.6212 11 1 6.8676 0.8492 1.9125 12 1 7.9141 -1.3299 1.7205 13 1 6.0819 -0.7309 0.2492 14 7 2.0196 -0.6924 -1.1995 15 6 1.8048 0.1232 -2.4030 16 6 2.3984 -0.5964 -3.6164 17 7 1.7663 -1.9154 -3.7579 18 6 2.2298 -2.5709 -4.8935 19 7 3.4872 -2.9820 -4.9466 20 6 3.9670 -3.6072 -6.0051 21 6 3.1681 -3.8568 -7.1029 22 6 1.8428 -3.4432 -7.0880 23 6 1.3658 -2.7953 -5.9615 24 17 -0.2845 -2.2623 -5.8855 25 6 1.9811 -2.7310 -2.5545 26 6 1.3875 -2.0115 -1.3411 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.6226 -0.2481 2.1378 31 1 1.7328 -1.7667 1.2159 32 1 3.9870 -1.1893 0.4548 33 1 3.8771 0.4036 1.2415 34 1 6.7963 -1.8349 4.1702 35 1 0.7358 0.2720 -2.5555 36 1 2.2927 1.0901 -2.2789 37 1 3.4721 -0.7209 -3.4760 38 1 2.2150 -0.0070 -4.5147 39 1 4.9981 -3.9284 -6.0123 40 1 3.5700 -4.3688 -7.9648 41 1 1.1975 -3.6264 -7.9346 42 1 3.0501 -2.8798 -2.4021 43 1 1.4935 -3.6980 -2.6783 44 1 1.5711 -2.6010 -0.4429 45 1 0.3137 -1.8871 -1.4812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:30 Heat of formation + Delta-G solvation = 46.827956 kcal Electronic energy + Delta-G solvation = -25589.541489 eV Core-core repulsion = 22054.053672 eV Total energy + Delta-G solvation = -3535.487816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95110 -39.19890 -36.75038 -36.54385 -33.46492 -32.59594 -31.94166 -30.89851 -30.29109 -29.14848 -26.12029 -25.17391 -23.99681 -23.56311 -22.76859 -21.12706 -20.04645 -18.94255 -17.82674 -17.04225 -16.61896 -16.53225 -15.83561 -15.34084 -14.94041 -14.62173 -14.26655 -14.16185 -13.95980 -13.78140 -13.57942 -13.24885 -12.79136 -12.70540 -12.43633 -12.22650 -12.04991 -11.93482 -11.80258 -11.44120 -11.32582 -11.22929 -11.00219 -10.82009 -10.58343 -10.32896 -10.10737 -9.93651 -9.73756 -9.60582 -9.40447 -9.09298 -8.97586 -8.74214 -8.40582 -7.86404 -5.92195 -3.88262 0.57303 0.76522 1.86840 3.27116 3.37865 3.41340 3.48336 3.58027 4.12254 4.22255 4.40977 4.58367 4.58651 4.68929 4.95799 4.97410 5.12093 5.26573 5.39342 5.42017 5.44042 5.44877 5.47528 5.56144 5.59927 5.64713 5.66623 5.84958 5.94179 5.98402 6.05115 6.14684 6.19413 6.26008 6.36724 6.56818 6.70854 6.76224 7.01226 7.11979 7.40950 7.45510 7.53359 7.55438 7.75920 7.96786 8.67926 9.14003 9.72343 11.21618 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.003530 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.648410 B = 7929.220977 C = 9189.630853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.077 0.923 4 C -0.092 4.092 5 C -0.004 4.004 6 C -0.517 4.517 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.523 5.523 15 C 0.058 3.942 16 C 0.066 3.934 17 N -0.484 5.484 18 C 0.311 3.689 19 N -0.491 5.491 20 C 0.114 3.886 21 C -0.169 4.169 22 C -0.067 4.067 23 C -0.063 4.063 24 Cl -0.040 7.040 25 C 0.064 3.936 26 C 0.056 3.944 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 -1.626 -25.541 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.028 4.028 3 H 0.095 0.905 4 C -0.130 4.130 5 C -0.041 4.041 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.184 1.184 14 N -0.247 5.247 15 C -0.070 4.070 16 C -0.060 4.060 17 N -0.208 5.208 18 C 0.081 3.919 19 N -0.203 5.203 20 C -0.045 4.045 21 C -0.189 4.189 22 C -0.094 4.094 23 C -0.094 4.094 24 Cl -0.011 7.011 25 C -0.063 4.063 26 C -0.072 4.072 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.179 0.821 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.319 -1.444 -24.688 26.797 hybrid contribution 0.080 0.176 -1.284 1.298 sum -10.240 -1.268 -25.972 27.946 Atomic orbital electron populations 1.22471 0.98364 1.01933 1.01404 1.21900 0.91607 0.98375 0.90946 0.90481 1.21519 0.99121 0.98849 0.93518 1.19443 0.91275 0.96093 0.97323 1.21271 0.92657 1.38599 1.02968 0.91434 1.25017 0.98484 0.94985 0.95096 1.69927 1.14518 1.46301 1.24217 0.86787 0.80476 0.78982 0.83179 1.20616 1.21778 1.18448 1.62311 1.57749 1.02743 1.01895 1.22118 0.99090 0.96485 0.89318 1.22182 0.98018 0.87678 0.98159 1.60441 1.55355 1.03807 1.01234 1.19785 0.86944 0.93529 0.91642 1.68036 1.13912 1.10822 1.27505 1.22756 1.00398 0.93223 0.88076 1.22150 0.93864 1.02160 1.00727 1.21525 0.96077 0.95092 0.96730 1.21728 0.88304 1.03168 0.96221 1.98378 1.15706 1.88693 1.98367 1.22214 1.01468 0.95247 0.87334 1.22198 0.96429 0.91095 0.97456 0.93375 0.92362 0.92223 0.92598 0.92932 0.95352 0.97730 0.92997 0.94053 0.90192 0.92285 0.90867 0.82099 0.83840 0.83654 0.91772 0.90814 0.89083 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.39 37.15 0.31 -2.13 16 2 C 0.08 1.28 2.31 -67.71 -0.16 1.12 16 3 H 0.08 1.25 7.98 -51.93 -0.41 0.83 16 4 C -0.09 -1.83 4.57 -26.73 -0.12 -1.95 16 5 C 0.00 -0.10 3.86 -27.89 -0.11 -0.20 16 6 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 7 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.90 13.96 55.43 0.77 -28.13 16 10 Si 0.88 22.71 27.47 -169.99 -4.67 18.04 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 14 N -0.52 -8.22 4.13 -226.49 -0.94 -9.15 16 15 C 0.06 0.78 5.37 -3.76 -0.02 0.76 16 16 C 0.07 0.87 5.49 -3.77 -0.02 0.85 16 17 N -0.48 -6.33 4.09 -173.00 -0.71 -7.04 16 18 C 0.31 3.86 5.35 -154.93 -0.83 3.03 16 19 N -0.49 -6.21 9.64 -12.40 -0.12 -6.33 16 20 C 0.11 1.05 11.17 -17.56 -0.20 0.85 16 21 C -0.17 -1.19 10.10 -39.43 -0.40 -1.59 16 22 C -0.07 -0.53 9.97 -39.29 -0.39 -0.92 16 23 C -0.06 -0.67 6.36 -39.16 -0.25 -0.92 16 24 Cl -0.04 -0.41 28.47 -51.86 -1.48 -1.89 16 25 C 0.06 0.91 5.38 -3.77 -0.02 0.89 16 26 C 0.06 0.82 4.69 -3.77 -0.02 0.81 16 27 H 0.05 0.59 6.85 -51.93 -0.36 0.24 16 28 H 0.06 0.77 6.39 -51.93 -0.33 0.44 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.04 6.43 -51.93 -0.33 0.71 16 32 H 0.03 0.72 6.92 -51.93 -0.36 0.36 16 33 H 0.00 0.11 7.57 -51.93 -0.39 -0.28 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.04 0.53 6.85 -51.93 -0.36 0.17 16 36 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 43 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 44 H 0.09 1.44 6.37 -51.93 -0.33 1.11 16 45 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -32.90 365.42 -11.27 -44.17 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.00 Total: -2.14 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.65 Total: -13.03 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.99 Total: -50.65 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.67 Total: 18.04 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.90 -11.27 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.999 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds