Wall clock time and date at job start Tue Mar 31 2020 14:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47201 * 2 1 4 4 C 1.53000 * 109.47573 * 120.00730 * 2 1 3 5 5 C 1.52992 * 109.47368 * 183.76563 * 4 2 1 6 6 C 1.50697 * 109.47106 * 175.02728 * 5 4 2 7 7 H 1.08005 * 120.00096 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00338 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00497 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99778 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46961 * 90.00108 * 10 8 6 12 12 H 1.48491 * 109.47209 * 210.00002 * 10 8 6 13 13 H 1.48504 * 109.47330 * 330.00427 * 10 8 6 14 14 N 1.46902 * 109.46960 * 240.00602 * 2 1 3 15 15 C 1.46955 * 111.00031 * 72.43637 * 14 2 1 16 16 C 1.53057 * 109.36475 * 176.81124 * 15 14 2 17 17 N 1.46952 * 109.36193 * 58.40197 * 16 15 14 18 18 C 1.39074 * 110.99896 * 176.80966 * 17 16 15 19 19 N 1.32397 * 119.70748 * 68.01638 * 18 17 16 20 20 C 1.31964 * 121.63498 * 180.02562 * 19 18 17 21 21 C 1.38049 * 120.87451 * 359.97438 * 20 19 18 22 22 C 1.38844 * 119.33973 * 359.97438 * 21 20 19 23 23 C 1.38426 * 118.49350 * 359.73630 * 22 21 20 24 24 Cl 1.73593 * 120.45955 * 180.25730 * 23 22 21 25 25 C 1.46955 * 110.88095 * 300.67846 * 17 16 15 26 26 C 1.46953 * 111.00108 * 308.63533 * 14 2 1 27 27 H 1.09000 * 109.47519 * 59.99579 * 1 2 3 28 28 H 1.09003 * 109.47495 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47325 * 299.99066 * 1 2 3 30 30 H 1.09003 * 109.46358 * 303.76857 * 4 2 1 31 31 H 1.09000 * 109.46793 * 63.75930 * 4 2 1 32 32 H 1.09000 * 109.47207 * 295.02719 * 5 4 2 33 33 H 1.09001 * 109.47282 * 55.02882 * 5 4 2 34 34 H 0.96994 * 120.00192 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.49299 * 296.77791 * 15 14 2 36 36 H 1.09004 * 109.49195 * 56.84287 * 15 14 2 37 37 H 1.08998 * 109.49002 * 298.43413 * 16 15 14 38 38 H 1.08999 * 109.50494 * 178.37840 * 16 15 14 39 39 H 1.08000 * 119.56296 * 180.02562 * 20 19 18 40 40 H 1.08005 * 120.32921 * 179.97438 * 21 20 19 41 41 H 1.08007 * 120.75121 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.48743 * 299.35149 * 25 17 16 43 43 H 1.09002 * 109.50724 * 179.30339 * 25 17 16 44 44 H 1.08999 * 109.49070 * 303.15975 * 26 14 2 45 45 H 1.09001 * 109.48973 * 63.20030 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5670 -0.6398 1.2973 6 6 4.0618 -1.2426 2.5869 7 1 3.3575 -1.6440 3.3005 8 6 5.4135 -1.2815 2.8558 9 7 5.8453 -1.8079 3.9809 10 14 6.6317 -0.5877 1.6212 11 1 6.8676 0.8492 1.9125 12 1 7.9141 -1.3299 1.7205 13 1 6.0819 -0.7309 0.2492 14 7 2.0196 -0.6924 -1.1995 15 6 1.8048 0.1232 -2.4030 16 6 2.3984 -0.5964 -3.6164 17 7 1.7663 -1.9154 -3.7579 18 6 2.2298 -2.5709 -4.8935 19 7 3.4872 -2.9820 -4.9466 20 6 3.9670 -3.6072 -6.0051 21 6 3.1681 -3.8568 -7.1029 22 6 1.8428 -3.4432 -7.0880 23 6 1.3658 -2.7953 -5.9615 24 17 -0.2845 -2.2623 -5.8855 25 6 1.9811 -2.7310 -2.5545 26 6 1.3875 -2.0115 -1.3411 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.6226 -0.2481 2.1378 31 1 1.7328 -1.7667 1.2159 32 1 3.9870 -1.1893 0.4548 33 1 3.8771 0.4036 1.2415 34 1 6.7963 -1.8349 4.1702 35 1 0.7358 0.2720 -2.5555 36 1 2.2927 1.0901 -2.2789 37 1 3.4721 -0.7209 -3.4760 38 1 2.2150 -0.0070 -4.5147 39 1 4.9981 -3.9284 -6.0123 40 1 3.5700 -4.3688 -7.9648 41 1 1.1975 -3.6264 -7.9346 42 1 3.0501 -2.8798 -2.4021 43 1 1.4935 -3.6980 -2.6783 44 1 1.5711 -2.6010 -0.4429 45 1 0.3137 -1.8871 -1.4812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:30 Heat of formation + Delta-G solvation = 26.106209 kcal Electronic energy + Delta-G solvation = -25590.440051 eV Core-core repulsion = 22054.053672 eV Total energy + Delta-G solvation = -3536.386379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77580 -40.26422 -37.66331 -37.49650 -35.33752 -33.74590 -33.17605 -31.99074 -31.67090 -30.31893 -27.32734 -26.82738 -24.86086 -24.52762 -23.65172 -22.79280 -21.49575 -20.15373 -18.82547 -18.64534 -17.83659 -17.35497 -16.91189 -16.36190 -16.30523 -15.91455 -15.71181 -15.32777 -14.98520 -14.81785 -14.71542 -14.43125 -14.23945 -14.18304 -13.57938 -13.36394 -13.23755 -13.15325 -12.99238 -12.87299 -12.79479 -12.44857 -12.09302 -12.06915 -11.92568 -11.78725 -11.61753 -11.36056 -11.33931 -11.03941 -10.79440 -10.72035 -10.69983 -9.88503 -9.70045 -9.04928 -8.26598 -6.28051 -0.14089 0.10314 1.12980 1.34572 1.37548 1.52529 2.38848 2.48429 2.56910 2.97124 3.09979 3.47610 3.82085 3.83490 3.91286 3.96087 4.10498 4.15837 4.27552 4.31881 4.32698 4.37291 4.43694 4.48222 4.52926 4.72065 4.78201 4.80304 4.87951 4.90784 4.95974 4.98730 5.03510 5.05175 5.12840 5.26659 5.37835 5.41795 5.60219 5.68621 5.71445 5.77087 6.07388 6.25295 6.30537 6.35085 6.80718 6.81255 7.36437 8.90535 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.003530 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.648410 B = 7929.220977 C = 9189.630853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.080 0.920 4 C -0.086 4.086 5 C 0.006 3.994 6 C -0.527 4.527 7 H 0.030 0.970 8 C 0.004 3.996 9 N -0.955 5.955 10 Si 0.949 3.051 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.252 1.252 14 N -0.545 5.545 15 C 0.063 3.937 16 C 0.073 3.927 17 N -0.479 5.479 18 C 0.281 3.719 19 N -0.528 5.528 20 C 0.100 3.900 21 C -0.148 4.148 22 C -0.064 4.064 23 C -0.072 4.072 24 Cl -0.043 7.043 25 C 0.074 3.926 26 C 0.063 3.937 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.020 0.980 33 H 0.007 0.993 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.175 0.825 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 -1.060 -29.068 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 H 0.098 0.902 4 C -0.124 4.124 5 C -0.031 4.031 6 C -0.565 4.565 7 H 0.048 0.952 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.773 3.227 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.176 1.176 14 N -0.270 5.270 15 C -0.065 4.065 16 C -0.054 4.054 17 N -0.202 5.202 18 C 0.052 3.948 19 N -0.241 5.241 20 C -0.058 4.058 21 C -0.168 4.168 22 C -0.091 4.091 23 C -0.103 4.103 24 Cl -0.014 7.014 25 C -0.053 4.053 26 C -0.065 4.065 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.198 0.802 40 H 0.201 0.799 41 H 0.193 0.807 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.864 -0.872 -28.227 30.258 hybrid contribution 0.257 -0.108 -0.207 0.347 sum -10.607 -0.980 -28.434 30.363 Atomic orbital electron populations 1.22343 0.95905 1.02302 1.02566 1.21697 0.93460 0.97610 0.89252 0.90211 1.21384 0.95966 0.99232 0.95772 1.19303 0.94403 0.95249 0.94161 1.21655 0.92370 1.38341 1.04178 0.95182 1.25959 1.00710 0.95434 0.97106 1.70073 1.15219 1.47956 1.26386 0.85667 0.77706 0.78735 0.80577 1.19160 1.21205 1.17621 1.62233 1.58616 1.03422 1.02714 1.22132 0.99862 0.96286 0.88184 1.22100 0.96425 0.88225 0.98659 1.60434 1.55199 1.03572 1.01011 1.19822 0.87611 0.95291 0.92033 1.67949 1.14415 1.12225 1.29483 1.23230 1.01692 0.92883 0.88026 1.22557 0.93069 1.00295 1.00870 1.21939 0.96832 0.93733 0.96555 1.21843 0.88023 1.03750 0.96635 1.98373 1.15803 1.88822 1.98413 1.22017 0.99431 0.95782 0.88072 1.22092 0.97041 0.90550 0.96817 0.91608 0.92395 0.91616 0.93037 0.93538 0.96210 0.97470 0.92703 0.92845 0.89528 0.94887 0.89418 0.80242 0.79885 0.80743 0.94807 0.90328 0.91035 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.39 71.98 0.60 -3.66 16 2 C 0.09 2.72 2.31 44.91 0.10 2.83 16 3 H 0.08 2.44 7.98 -2.39 -0.02 2.43 16 4 C -0.09 -3.42 4.57 30.59 0.14 -3.28 16 5 C 0.01 0.31 3.86 29.84 0.12 0.43 16 6 C -0.53 -31.84 9.66 25.60 0.25 -31.60 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 8 C 0.00 0.24 5.47 84.66 0.46 0.70 16 9 N -0.95 -62.26 13.96 21.45 0.30 -61.96 16 10 Si 0.95 47.37 27.47 68.60 1.88 49.26 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.25 -12.19 6.54 99.48 0.65 -11.53 16 14 N -0.55 -16.79 4.13 -870.49 -3.60 -20.39 16 15 C 0.06 1.59 5.37 86.31 0.46 2.06 16 16 C 0.07 1.86 5.49 86.31 0.47 2.34 16 17 N -0.48 -12.28 4.09 -701.25 -2.87 -15.15 16 18 C 0.28 6.78 5.35 133.05 0.71 7.49 16 19 N -0.53 -13.12 9.64 -193.15 -1.86 -14.98 16 20 C 0.10 1.65 11.17 84.63 0.95 2.59 16 21 C -0.15 -1.57 10.10 22.37 0.23 -1.34 16 22 C -0.06 -0.81 9.97 22.46 0.22 -0.58 16 23 C -0.07 -1.38 6.36 22.54 0.14 -1.24 16 24 Cl -0.04 -0.81 28.47 -2.72 -0.08 -0.88 16 25 C 0.07 2.13 5.38 86.31 0.46 2.60 16 26 C 0.06 1.84 4.69 86.31 0.41 2.25 16 27 H 0.06 1.42 6.85 -2.39 -0.02 1.40 16 28 H 0.06 1.44 6.39 -2.39 -0.02 1.42 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.89 6.43 -2.39 -0.02 1.87 16 32 H 0.02 1.00 6.92 -2.39 -0.02 0.99 16 33 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 34 H 0.26 16.08 8.31 -92.71 -0.77 15.30 16 35 H 0.05 1.23 6.85 -2.39 -0.02 1.22 16 36 H 0.09 2.05 8.05 -2.38 -0.02 2.03 16 37 H 0.03 1.01 8.07 -2.39 -0.02 0.99 16 38 H 0.09 1.96 8.13 -2.39 -0.02 1.94 16 39 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.03 1.16 7.86 -2.39 -0.02 1.14 16 43 H 0.08 2.12 8.13 -2.39 -0.02 2.10 16 44 H 0.07 2.34 6.37 -2.39 -0.02 2.32 16 45 H 0.06 1.48 6.40 -2.39 -0.02 1.47 16 Total: -1.00 -73.62 365.42 0.43 -73.19 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.92 Total: 9.34 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.73 Total: -18.42 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -8.03 Total: -112.48 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.88 Total: 49.26 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.88 kcal Total: -73.62 0.43 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.296 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds