Wall clock time and date at job start Tue Mar 31 2020 14:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46933 * 2 1 4 4 C 1.53000 * 109.47043 * 119.99565 * 2 1 3 5 5 C 1.53005 * 109.47203 * 183.92369 * 4 2 1 6 6 C 1.50695 * 109.47297 * 175.94030 * 5 4 2 7 7 H 1.08002 * 120.00187 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99933 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99683 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00117 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47185 * 90.00081 * 10 8 6 12 12 H 1.48500 * 109.47364 * 210.00073 * 10 8 6 13 13 H 1.48496 * 109.47368 * 329.99903 * 10 8 6 14 14 N 1.46895 * 109.47201 * 239.99812 * 2 1 3 15 15 C 1.46962 * 110.99866 * 72.35142 * 14 2 1 16 16 C 1.53049 * 109.36350 * 176.81447 * 15 14 2 17 17 N 1.46955 * 109.36775 * 58.39932 * 16 15 14 18 18 C 1.39008 * 111.00131 * 176.81568 * 17 16 15 19 19 C 1.39082 * 119.69342 * 303.52299 * 18 17 16 20 20 C 1.38452 * 119.07533 * 179.75246 * 19 18 17 21 21 Cl 1.73606 * 120.75839 * 180.24401 * 20 19 18 22 22 C 1.39024 * 118.47814 * 0.51847 * 20 19 18 23 23 C 1.37962 * 119.31618 * 359.72138 * 22 20 19 24 24 N 1.31993 * 120.86736 * 0.02878 * 23 22 20 25 25 C 1.46962 * 110.88077 * 300.68058 * 17 16 15 26 26 C 1.46955 * 111.00117 * 308.55153 * 14 2 1 27 27 H 1.09000 * 109.47244 * 60.00175 * 1 2 3 28 28 H 1.09002 * 109.46950 * 299.99918 * 1 2 3 29 29 H 1.08996 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47701 * 303.92174 * 4 2 1 31 31 H 1.09002 * 109.46764 * 63.92651 * 4 2 1 32 32 H 1.09000 * 109.46696 * 295.94294 * 5 4 2 33 33 H 1.08999 * 109.47185 * 55.93743 * 5 4 2 34 34 H 0.97006 * 119.99989 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.48819 * 296.77839 * 15 14 2 36 36 H 1.08993 * 109.48645 * 56.84666 * 15 14 2 37 37 H 1.09006 * 109.48829 * 298.43418 * 16 15 14 38 38 H 1.09001 * 109.50602 * 178.38052 * 16 15 14 39 39 H 1.07997 * 120.46311 * 359.97438 * 19 18 17 40 40 H 1.08000 * 120.34069 * 179.75354 * 22 20 19 41 41 H 1.08000 * 119.57235 * 180.02562 * 23 22 20 42 42 H 1.09001 * 109.48819 * 299.35298 * 25 17 16 43 43 H 1.08994 * 109.50998 * 179.29712 * 25 17 16 44 44 H 1.09004 * 109.48811 * 303.15684 * 26 14 2 45 45 H 1.09001 * 109.48955 * 63.19620 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5668 -0.6363 1.2997 6 6 4.0627 -1.2589 2.5792 7 1 3.3591 -1.6734 3.2862 8 6 5.4145 -1.2995 2.8475 9 7 5.8471 -1.8425 3.9645 10 14 6.6313 -0.5833 1.6246 11 1 6.8643 0.8492 1.9393 12 1 7.9152 -1.3245 1.7119 13 1 6.0819 -0.7052 0.2504 14 7 2.0197 -0.6925 -1.1994 15 6 1.8030 0.1222 -2.4032 16 6 2.3967 -0.5975 -3.6165 17 7 1.7661 -1.9175 -3.7569 18 6 2.2295 -2.5728 -4.8918 19 6 2.1086 -1.9641 -6.1365 20 6 2.5792 -2.6261 -7.2577 21 17 2.4564 -1.9042 -8.8318 22 6 3.1470 -3.8846 -7.0949 23 6 3.2296 -4.4300 -5.8304 24 7 2.7770 -3.7732 -4.7788 25 6 1.9827 -2.7321 -2.5530 26 6 1.3891 -2.0125 -1.3397 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6204 -0.2495 2.1379 31 1 1.7352 -1.7671 1.2148 32 1 3.9886 -1.1704 0.4483 33 1 3.8741 0.4088 1.2612 34 1 6.7982 -1.8714 4.1531 35 1 0.7337 0.2694 -2.5550 36 1 2.2899 1.0895 -2.2800 37 1 3.4707 -0.7206 -3.4767 38 1 2.2120 -0.0088 -4.5151 39 1 1.6573 -0.9871 -6.2267 40 1 3.5201 -4.4294 -7.9495 41 1 3.6703 -5.4072 -5.6991 42 1 3.0520 -2.8794 -2.4012 43 1 1.4962 -3.6997 -2.6759 44 1 1.5741 -2.6012 -0.4412 45 1 0.3151 -1.8895 -1.4791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172502878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:35 Heat of formation + Delta-G solvation = 26.727827 kcal Electronic energy + Delta-G solvation = -25293.993322 eV Core-core repulsion = 21757.633898 eV Total energy + Delta-G solvation = -3536.359423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87513 -40.27842 -38.03507 -37.45689 -35.33882 -33.69562 -33.33346 -31.98306 -31.67816 -30.37997 -27.35720 -26.89031 -25.51117 -23.84082 -23.60890 -22.78495 -21.55523 -20.20525 -18.92689 -18.76737 -17.77475 -17.20412 -16.87744 -16.32153 -16.18294 -15.92542 -15.67435 -15.48086 -15.31645 -14.83861 -14.78792 -14.62837 -14.35426 -14.25001 -13.58233 -13.34349 -13.30137 -13.25431 -13.06857 -12.86737 -12.80412 -12.43680 -12.12401 -12.10090 -11.93108 -11.77072 -11.61602 -11.36160 -11.34436 -11.08446 -10.97085 -10.71737 -10.61993 -10.53437 -9.26135 -9.06610 -8.26198 -6.27834 -0.01304 0.01026 0.85338 1.35090 1.38078 1.52178 2.33499 2.39064 2.71978 2.96582 3.10440 3.39193 3.76440 3.85099 3.90640 3.93916 4.04336 4.15231 4.23614 4.28502 4.30056 4.41129 4.45747 4.51014 4.59458 4.62765 4.74002 4.79664 4.82946 4.88311 4.93670 4.96211 4.99826 5.03961 5.11187 5.26580 5.29851 5.40923 5.56525 5.60972 5.71196 5.77314 5.99153 6.22426 6.28414 6.35331 6.81210 6.90573 7.36609 8.91012 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.003022 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.799634 B = 9263.184086 C =10142.246850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 H 0.082 0.918 4 C -0.087 4.087 5 C 0.006 3.994 6 C -0.527 4.527 7 H 0.029 0.971 8 C 0.002 3.998 9 N -0.956 5.956 10 Si 0.950 3.050 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.250 1.250 14 N -0.547 5.547 15 C 0.058 3.942 16 C 0.065 3.935 17 N -0.476 5.476 18 C 0.313 3.687 19 C -0.184 4.184 20 C 0.023 3.977 21 Cl -0.044 7.044 22 C -0.191 4.191 23 C 0.135 3.865 24 N -0.544 5.544 25 C 0.082 3.918 26 C 0.057 3.943 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.008 0.992 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.170 0.830 41 H 0.190 0.810 42 H 0.035 0.965 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 1.042 -28.055 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 H 0.100 0.900 4 C -0.125 4.125 5 C -0.032 4.032 6 C -0.566 4.566 7 H 0.047 0.953 8 C -0.194 4.194 9 N -0.597 5.597 10 Si 0.774 3.226 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.174 1.174 14 N -0.272 5.272 15 C -0.070 4.070 16 C -0.061 4.061 17 N -0.193 5.193 18 C 0.081 3.919 19 C -0.207 4.207 20 C -0.012 4.012 21 Cl -0.015 7.015 22 C -0.212 4.212 23 C -0.022 4.022 24 N -0.259 5.259 25 C -0.045 4.045 26 C -0.071 4.071 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.129 0.871 39 H 0.175 0.825 40 H 0.187 0.813 41 H 0.207 0.793 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.040 0.759 -27.209 29.012 hybrid contribution 0.601 0.293 -0.562 0.874 sum -9.439 1.051 -27.771 29.350 Atomic orbital electron populations 1.22355 0.95949 1.02265 1.02664 1.21692 0.93414 0.97680 0.89170 0.89950 1.21400 0.96011 0.99252 0.95857 1.19313 0.94373 0.95268 0.94205 1.21658 0.92356 1.37589 1.04949 0.95294 1.25988 1.00764 0.95524 0.97096 1.70084 1.15185 1.47646 1.26816 0.85648 0.77612 0.78701 0.80607 1.19154 1.21349 1.17369 1.62262 1.58661 1.03401 1.02851 1.22217 1.00202 0.96598 0.88000 1.22418 0.96454 0.87149 1.00058 1.59364 1.53016 1.04995 1.01918 1.19945 0.90526 0.90362 0.91053 1.21518 1.05639 1.03471 0.90066 1.21224 0.98283 0.94421 0.87247 1.98403 1.96483 1.82890 1.23742 1.22237 1.03456 0.94969 1.00544 1.23079 0.92973 0.99645 0.86507 1.67688 1.12699 1.09701 1.35792 1.21893 0.99736 0.95939 0.86942 1.22189 0.97053 0.90626 0.97215 0.91406 0.91659 0.92513 0.93085 0.93593 0.96059 0.97350 0.92728 0.92534 0.88760 0.94412 0.87074 0.82462 0.81274 0.79315 0.94610 0.89576 0.90956 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.39 71.98 0.60 -3.42 16 2 C 0.09 2.58 2.31 44.92 0.10 2.69 16 3 H 0.08 2.35 7.98 -2.38 -0.02 2.33 16 4 C -0.09 -3.38 4.58 30.60 0.14 -3.24 16 5 C 0.01 0.28 3.87 29.85 0.12 0.40 16 6 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 7 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 8 C 0.00 0.13 5.47 84.65 0.46 0.59 16 9 N -0.96 -61.86 13.96 21.45 0.30 -61.57 16 10 Si 0.95 46.49 27.47 68.60 1.88 48.38 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 14 N -0.55 -15.62 4.12 -870.47 -3.59 -19.21 16 15 C 0.06 1.25 5.36 86.31 0.46 1.72 16 16 C 0.06 1.37 5.37 86.31 0.46 1.84 16 17 N -0.48 -11.21 4.73 -701.40 -3.32 -14.53 16 18 C 0.31 7.18 6.40 133.04 0.85 8.03 16 19 C -0.18 -3.39 9.03 22.52 0.20 -3.18 16 20 C 0.02 0.38 6.37 22.51 0.14 0.52 16 21 Cl -0.04 -0.62 29.02 -2.72 -0.08 -0.70 16 22 C -0.19 -2.74 9.93 22.39 0.22 -2.52 16 23 C 0.14 2.33 11.17 84.60 0.95 3.27 16 24 N -0.54 -13.01 8.71 -193.32 -1.68 -14.69 16 25 C 0.08 2.25 4.79 86.31 0.41 2.66 16 26 C 0.06 1.58 4.70 86.31 0.41 1.99 16 27 H 0.07 1.33 6.85 -2.39 -0.02 1.31 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.34 6.39 -2.39 -0.02 1.32 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.82 6.42 -2.39 -0.02 1.81 16 32 H 0.02 1.05 6.89 -2.39 -0.02 1.03 16 33 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 34 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 35 H 0.06 1.10 6.85 -2.39 -0.02 1.08 16 36 H 0.09 1.86 8.05 -2.39 -0.02 1.85 16 37 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.11 1.72 6.80 -2.39 -0.02 1.70 16 39 H 0.16 2.38 7.19 -2.91 -0.02 2.36 16 40 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.04 1.16 8.05 -2.39 -0.02 1.14 16 43 H 0.09 2.33 7.82 -2.39 -0.02 2.31 16 44 H 0.07 2.28 6.36 -2.38 -0.02 2.27 16 45 H 0.05 1.37 6.40 -2.39 -0.02 1.36 16 Total: -1.00 -71.00 362.62 0.22 -70.78 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.92 Total: 11.35 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 5.78 Total: -19.81 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -8.29 Total: -109.99 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.88 Total: 48.38 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -71.00 0.22 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.511 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds