Wall clock time and date at job start Tue Mar 31 2020 14:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9 16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21676 * 120.00345 * 0.02562 * 18 17 2 20 20 C 1.46775 * 120.00089 * 180.02562 * 18 17 2 21 21 C 1.36058 * 125.65652 * 180.02562 * 20 18 17 22 22 C 1.41735 * 106.62431 * 180.02562 * 21 20 18 23 23 C 1.47485 * 126.77146 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00101 * 179.97438 * 23 22 21 25 25 O 1.21606 * 120.00324 * 359.97438 * 23 22 21 26 26 C 1.37807 * 106.45101 * 359.97438 * 22 21 20 27 27 O 1.33496 * 108.34678 * 359.73459 * 26 22 21 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 36 36 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 37 37 H 1.09001 * 109.46908 * 300.00434 * 7 6 5 38 38 H 1.08996 * 109.46687 * 59.99974 * 7 6 5 39 39 H 0.96999 * 120.00405 * 0.02562 * 8 7 6 40 40 H 0.97006 * 119.99411 * 179.97438 * 12 11 9 41 41 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 42 42 H 1.07999 * 126.68492 * 359.97438 * 21 20 18 43 43 H 0.97001 * 119.99512 * 0.02562 * 24 23 22 44 44 H 0.96995 * 120.00470 * 179.97438 * 24 23 22 45 45 H 1.08005 * 125.82347 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 6 5.5998 -1.2267 -2.6272 8 7 6.0882 -1.9173 -3.8232 9 6 7.4303 -1.9546 -4.0924 10 1 8.1287 -1.4745 -3.4231 11 6 7.8930 -2.6086 -5.2260 12 7 7.0417 -3.1933 -6.0419 13 14 9.7238 -2.6588 -5.5934 14 1 10.4623 -1.9316 -4.5299 15 1 10.1813 -4.0709 -5.6374 16 1 9.9833 -2.0133 -6.9054 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8572 1.1622 2.4119 20 6 2.6367 -0.7100 3.5555 21 6 2.8098 -0.1462 4.7816 22 6 3.2956 -1.1695 5.6335 23 6 3.6347 -1.0413 7.0631 24 7 4.0881 -2.1107 7.7467 25 8 3.5052 0.0293 7.6251 26 6 3.3887 -2.3078 4.8623 27 8 2.9839 -2.0116 3.6252 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.7865 -2.3844 -2.5199 36 1 3.6403 -0.8743 -3.4507 37 1 5.8885 -0.1765 -2.6701 38 1 6.0340 -1.6868 -1.7396 39 1 5.4608 -2.3483 -4.4246 40 1 7.3651 -3.6500 -6.8343 41 1 2.2490 -1.6318 1.1527 42 1 2.6156 0.8810 5.0526 43 1 4.1918 -2.9645 7.2983 44 1 4.3115 -2.0263 8.6868 45 1 3.7273 -3.2756 5.2020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175217719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:47 Heat of formation + Delta-G solvation = -70.946998 kcal Electronic energy + Delta-G solvation = -25970.425392 eV Core-core repulsion = 21989.121306 eV Total energy + Delta-G solvation = -3981.304086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.32578 -40.01989 -39.57123 -37.09982 -35.32934 -34.39650 -33.54223 -33.25547 -31.88798 -30.58681 -29.88413 -27.47889 -24.66570 -24.51360 -23.86041 -22.08813 -21.42720 -20.93679 -20.68605 -20.38780 -19.25717 -17.54464 -17.04649 -16.99839 -16.96906 -16.51997 -16.41204 -15.18638 -15.07804 -14.89794 -14.79870 -14.57816 -14.10931 -13.99148 -13.62687 -13.54453 -13.25891 -13.13224 -12.97637 -12.94751 -12.41385 -11.80372 -11.51663 -11.31560 -11.03490 -10.83823 -10.73607 -10.72261 -10.57483 -10.57073 -10.42260 -10.31534 -10.26210 -9.97668 -9.68780 -9.49754 -9.21125 -8.86642 -6.90567 -5.76000 -3.04256 0.45918 1.09168 2.04649 2.69057 2.71271 2.91919 3.03983 3.43288 3.48880 3.51281 3.94033 4.07485 4.37955 4.49999 4.63356 4.82441 4.92620 4.93906 5.01005 5.17990 5.21778 5.34964 5.40907 5.53207 5.57816 5.64640 5.65481 5.74222 5.84155 5.91868 6.06177 6.06597 6.17246 6.22250 6.28920 6.31514 6.37509 6.45556 6.75019 6.89120 6.92980 7.12249 7.71238 7.71844 7.74515 8.43510 9.54285 10.13558 10.48083 11.47184 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.002142 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.017810 B =13069.936231 C =14921.513409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.709 5.709 18 C 0.604 3.396 19 O -0.516 6.516 20 C -0.076 4.076 21 C -0.068 4.068 22 C -0.244 4.244 23 C 0.593 3.407 24 N -0.851 5.851 25 O -0.533 6.533 26 C 0.048 3.952 27 O -0.148 6.148 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.406 0.594 42 H 0.172 0.828 43 H 0.400 0.600 44 H 0.408 0.592 45 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 -0.864 24.744 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.360 5.360 18 C 0.389 3.611 19 O -0.393 6.393 20 C -0.127 4.127 21 C -0.089 4.089 22 C -0.249 4.249 23 C 0.379 3.621 24 N -0.415 5.415 25 O -0.410 6.410 26 C -0.026 4.026 27 O -0.041 6.041 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.241 0.759 42 H 0.189 0.811 43 H 0.228 0.772 44 H 0.240 0.760 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.240 0.618 24.685 28.505 hybrid contribution 1.200 -1.198 -0.127 1.700 sum -13.039 -0.580 24.559 27.812 Atomic orbital electron populations 1.22189 0.94991 1.02302 1.02756 1.21171 0.94015 0.97847 0.83372 0.88882 1.21951 0.96958 1.01022 0.96565 1.21540 0.93884 1.01224 0.98714 1.21725 0.97264 1.00266 0.97066 1.20649 0.91005 0.95349 0.90547 1.42395 1.05340 1.64979 1.25193 1.19299 0.83922 1.28248 1.05400 0.91184 1.24757 0.97758 1.01031 0.97722 1.69675 1.32669 1.40922 1.15090 0.86105 0.85058 0.77205 0.77785 1.20563 1.21867 1.21851 1.46025 1.66240 1.14423 1.09310 1.16496 0.77806 0.85722 0.81069 1.90908 1.50501 1.14092 1.83787 1.22074 1.11367 0.81829 0.97448 1.21869 0.96325 1.00967 0.89778 1.20638 1.13371 0.95105 0.95800 1.17219 0.76111 0.83861 0.84896 1.43654 1.69987 1.12609 1.15234 1.90872 1.53047 1.27184 1.69909 1.25071 0.96645 0.99644 0.81210 1.83957 1.62501 1.26718 1.30925 0.91179 0.92331 0.92133 0.91198 0.89891 0.91864 0.92151 0.92117 0.91995 0.96546 0.96648 0.78350 0.93601 0.75873 0.81094 0.77198 0.76016 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.28 2.57 -67.93 -0.17 1.11 16 3 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.17 4.75 -26.73 -0.13 -1.29 16 5 C -0.12 -1.38 5.10 -26.72 -0.14 -1.51 16 6 C -0.13 -1.95 5.33 -26.72 -0.14 -2.09 16 7 C 0.15 3.11 6.26 -4.04 -0.03 3.08 16 8 N -0.74 -19.10 5.60 -59.91 -0.34 -19.43 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 13 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 N -0.71 -6.44 4.53 -55.08 -0.25 -6.69 16 18 C 0.60 6.72 7.75 -12.81 -0.10 6.63 16 19 O -0.52 -7.35 16.51 5.21 0.09 -7.26 16 20 C -0.08 -0.74 7.09 -36.92 -0.26 -1.00 16 21 C -0.07 -0.69 10.41 -39.03 -0.41 -1.10 16 22 C -0.24 -1.93 6.16 -104.95 -0.65 -2.57 16 23 C 0.59 5.01 8.09 -12.49 -0.10 4.91 16 24 N -0.85 -3.00 8.86 30.45 0.27 -2.73 16 25 O -0.53 -6.99 17.77 5.27 0.09 -6.89 16 26 C 0.05 0.23 11.64 30.57 0.36 0.59 16 27 O -0.15 -1.09 10.33 6.17 0.06 -1.02 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.41 3.01 8.34 -40.82 -0.34 2.67 16 42 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.40 0.01 7.78 -40.82 -0.32 -0.31 16 44 H 0.41 1.07 8.93 -40.82 -0.36 0.70 16 45 H 0.22 -0.10 7.46 -52.48 -0.39 -0.49 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -37.84 388.80 -6.89 -44.73 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.72 Total: 5.49 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.66 Total: -1.79 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.41 Total: -56.72 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.24 Total: -15.18 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.84 -6.89 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175217719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.212 kcal (2) G-P(sol) polarization free energy of solvation -37.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds