Wall clock time and date at job start Tue Mar 31 2020 14:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9 16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21676 * 120.00345 * 0.02562 * 18 17 2 20 20 C 1.46775 * 120.00089 * 180.02562 * 18 17 2 21 21 C 1.36058 * 125.65652 * 180.02562 * 20 18 17 22 22 C 1.41735 * 106.62431 * 180.02562 * 21 20 18 23 23 C 1.47485 * 126.77146 * 179.97438 * 22 21 20 24 24 N 1.34778 * 120.00101 * 179.97438 * 23 22 21 25 25 O 1.21606 * 120.00324 * 359.97438 * 23 22 21 26 26 C 1.37807 * 106.45101 * 359.97438 * 22 21 20 27 27 O 1.33496 * 108.34678 * 359.73459 * 26 22 21 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 36 36 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 37 37 H 1.09001 * 109.46908 * 300.00434 * 7 6 5 38 38 H 1.08996 * 109.46687 * 59.99974 * 7 6 5 39 39 H 0.96999 * 120.00405 * 0.02562 * 8 7 6 40 40 H 0.97006 * 119.99411 * 179.97438 * 12 11 9 41 41 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 42 42 H 1.07999 * 126.68492 * 359.97438 * 21 20 18 43 43 H 0.97001 * 119.99512 * 0.02562 * 24 23 22 44 44 H 0.96995 * 120.00470 * 179.97438 * 24 23 22 45 45 H 1.08005 * 125.82347 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 6 5.5998 -1.2267 -2.6272 8 7 6.0882 -1.9173 -3.8232 9 6 7.4303 -1.9546 -4.0924 10 1 8.1287 -1.4745 -3.4231 11 6 7.8930 -2.6086 -5.2260 12 7 7.0417 -3.1933 -6.0419 13 14 9.7238 -2.6588 -5.5934 14 1 10.4623 -1.9316 -4.5299 15 1 10.1813 -4.0709 -5.6374 16 1 9.9833 -2.0133 -6.9054 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8572 1.1622 2.4119 20 6 2.6367 -0.7100 3.5555 21 6 2.8098 -0.1462 4.7816 22 6 3.2956 -1.1695 5.6335 23 6 3.6347 -1.0413 7.0631 24 7 4.0881 -2.1107 7.7467 25 8 3.5052 0.0293 7.6251 26 6 3.3887 -2.3078 4.8623 27 8 2.9839 -2.0116 3.6252 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.7865 -2.3844 -2.5199 36 1 3.6403 -0.8743 -3.4507 37 1 5.8885 -0.1765 -2.6701 38 1 6.0340 -1.6868 -1.7396 39 1 5.4608 -2.3483 -4.4246 40 1 7.3651 -3.6500 -6.8343 41 1 2.2490 -1.6318 1.1527 42 1 2.6156 0.8810 5.0526 43 1 4.1918 -2.9645 7.2983 44 1 4.3115 -2.0263 8.6868 45 1 3.7273 -3.2756 5.2020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175217719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:46 Heat of formation + Delta-G solvation = -101.381670 kcal Electronic energy + Delta-G solvation = -25971.745139 eV Core-core repulsion = 21989.121306 eV Total energy + Delta-G solvation = -3982.623833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.93642 -40.84878 -40.23028 -38.10221 -36.87748 -35.02520 -34.80689 -34.04512 -33.14260 -31.98234 -30.63446 -28.81751 -26.01154 -25.14351 -24.95005 -23.51922 -22.13644 -22.02572 -21.73217 -21.05674 -19.87866 -19.12369 -18.04917 -17.70064 -17.60470 -17.20021 -17.06419 -16.68503 -16.28000 -15.93529 -15.60937 -15.53347 -15.30386 -15.23477 -14.85340 -14.60459 -14.30319 -14.18681 -14.06494 -13.76563 -13.27226 -13.04239 -12.90000 -12.85924 -12.46254 -12.30566 -12.11258 -11.89078 -11.82232 -11.58743 -11.44639 -11.40946 -11.35138 -11.26170 -10.95011 -10.75330 -10.30789 -9.84024 -9.01510 -7.96989 -5.26057 -0.13475 0.41619 1.43031 1.46718 1.47835 1.58100 1.92777 2.05617 2.25740 2.52770 2.55046 3.36450 3.41830 3.52108 3.62272 3.88511 4.02125 4.05980 4.14377 4.26979 4.35122 4.40335 4.44012 4.60805 4.65559 4.70961 4.76198 4.88084 4.91814 4.93466 4.99073 5.02229 5.09149 5.27448 5.32212 5.37422 5.46264 5.48958 5.53712 5.57191 5.83378 6.26321 6.37525 6.40726 6.97259 7.26231 7.31929 8.08675 8.32110 9.26797 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.002142 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.017810 B =13069.936231 C =14921.513409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.248 4.248 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.292 1.292 17 N -0.698 5.698 18 C 0.601 3.399 19 O -0.558 6.558 20 C -0.091 4.091 21 C -0.085 4.085 22 C -0.272 4.272 23 C 0.591 3.409 24 N -0.823 5.823 25 O -0.594 6.594 26 C 0.095 3.905 27 O -0.145 6.145 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.012 0.988 38 H 0.018 0.982 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.416 0.584 42 H 0.149 0.851 43 H 0.420 0.580 44 H 0.416 0.584 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.625 -3.178 25.471 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.380 4.380 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.192 1.192 15 H -0.217 1.217 16 H -0.219 1.219 17 N -0.349 5.349 18 C 0.388 3.612 19 O -0.439 6.439 20 C -0.142 4.142 21 C -0.107 4.107 22 C -0.276 4.276 23 C 0.378 3.622 24 N -0.388 5.388 25 O -0.476 6.476 26 C 0.022 3.978 27 O -0.037 6.037 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.254 0.746 42 H 0.167 0.833 43 H 0.252 0.748 44 H 0.248 0.752 45 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -13.825 -1.760 25.433 29.002 hybrid contribution 1.094 -0.545 -0.272 1.252 sum -12.732 -2.305 25.161 28.293 Atomic orbital electron populations 1.22134 0.93893 1.03107 1.02528 1.21123 0.94810 0.96938 0.83344 0.90776 1.21854 0.94659 1.02132 0.96728 1.21448 0.95878 1.00249 0.96938 1.21596 0.93646 1.01015 0.98710 1.20864 0.94355 0.94226 0.88460 1.42634 1.04518 1.65377 1.26633 1.19681 0.85333 1.27614 1.05378 0.90926 1.25614 1.02271 1.01265 0.97826 1.69822 1.34597 1.42007 1.15542 0.85044 0.79853 0.77125 0.77562 1.19190 1.21651 1.21925 1.45963 1.65411 1.14791 1.08703 1.16679 0.77346 0.85352 0.81837 1.90878 1.52527 1.15931 1.84566 1.21624 1.13077 0.82896 0.96624 1.21888 0.96911 1.00916 0.90957 1.20634 1.15351 0.95766 0.95885 1.17366 0.75786 0.83943 0.85130 1.43427 1.67655 1.12246 1.15447 1.90843 1.56034 1.29659 1.71030 1.26163 0.92005 1.00406 0.79263 1.83977 1.62441 1.25234 1.32053 0.90072 0.90948 0.93739 0.89534 0.89061 0.92552 0.91724 0.91724 0.92322 0.97014 0.96422 0.79371 0.93893 0.74629 0.83284 0.74751 0.75175 0.70369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.70 16 2 C 0.14 2.46 2.57 44.99 0.12 2.57 16 3 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.12 -1.88 4.75 30.60 0.15 -1.73 16 5 C -0.11 -2.38 5.10 30.60 0.16 -2.22 16 6 C -0.11 -3.32 5.33 30.60 0.16 -3.16 16 7 C 0.15 5.92 6.26 86.38 0.54 6.46 16 8 N -0.75 -38.85 5.60 -343.47 -1.92 -40.78 16 9 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 10 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 11 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 12 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 13 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 16 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 17 N -0.70 -12.01 4.53 -446.41 -2.02 -14.03 16 18 C 0.60 13.64 7.75 86.47 0.67 14.31 16 19 O -0.56 -16.91 16.51 -4.27 -0.07 -16.98 16 20 C -0.09 -1.75 7.09 24.00 0.17 -1.58 16 21 C -0.09 -1.80 10.41 22.63 0.24 -1.57 16 22 C -0.27 -3.97 6.16 -20.08 -0.12 -4.09 16 23 C 0.59 9.56 8.09 86.68 0.70 10.26 16 24 N -0.82 -3.74 8.86 -175.84 -1.56 -5.30 16 25 O -0.59 -16.30 17.77 -4.05 -0.07 -16.37 16 26 C 0.09 0.57 11.64 67.72 0.79 1.36 16 27 O -0.14 -1.74 10.33 -0.82 -0.01 -1.75 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 40 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 41 H 0.42 5.31 8.34 -92.71 -0.77 4.54 16 42 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 43 H 0.42 -1.75 7.78 -92.71 -0.72 -2.47 16 44 H 0.42 1.30 8.93 -92.71 -0.83 0.47 16 45 H 0.28 -2.11 7.46 -2.91 -0.02 -2.13 16 Total: -1.00 -85.86 388.80 0.23 -85.63 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -1.98 Total: 18.92 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.55 Total: 1.55 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -5.22 Total: -119.33 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.15 Total: -35.10 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -85.86 0.23 -85.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175217719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.749 kcal (2) G-P(sol) polarization free energy of solvation -85.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds