Wall clock time and date at job start Tue Mar 31 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35727 * 116.99547 * 2 1 4 4 C 1.41860 * 126.78419 * 180.02562 * 3 2 1 5 5 C 1.36664 * 103.81247 * 179.97438 * 4 3 2 6 6 C 1.47541 * 126.87355 * 179.97438 * 5 4 3 7 7 O 1.21578 * 120.00685 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99345 * 180.02562 * 6 5 4 9 9 C 1.48146 * 127.84246 * 359.97438 * 8 6 5 10 10 C 1.54386 * 104.61890 * 140.39015 * 9 8 6 11 11 H 1.09006 * 110.34283 * 142.73841 * 10 9 8 12 12 C 1.52995 * 110.34584 * 264.99401 * 10 9 8 13 13 C 1.54286 * 104.96248 * 23.86937 * 10 9 8 14 14 C 1.52994 * 110.34237 * 241.02239 * 13 10 9 15 15 C 1.53000 * 110.34248 * 118.86654 * 13 10 9 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 13 10 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00562 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99699 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00457 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.47392 * 329.99935 * 21 19 17 25 25 C 1.48152 * 127.83563 * 179.97438 * 8 6 5 26 26 O 1.34659 * 106.23895 * 0.24243 * 5 4 3 27 27 N 1.20869 * 111.63311 * 359.56007 * 26 5 4 28 28 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47050 * 299.99910 * 1 2 3 30 30 H 1.08993 * 109.47581 * 59.99951 * 1 2 3 31 31 H 1.07999 * 128.08772 * 359.97125 * 4 3 2 32 32 H 1.09000 * 110.40469 * 21.60472 * 9 8 6 33 33 H 1.08997 * 110.40832 * 259.17770 * 9 8 6 34 34 H 1.09002 * 109.47315 * 175.53529 * 12 10 9 35 35 H 1.08998 * 109.47517 * 295.54335 * 12 10 9 36 36 H 1.09007 * 109.46860 * 55.53694 * 12 10 9 37 37 H 1.08996 * 109.47469 * 298.52526 * 14 13 10 38 38 H 1.09004 * 109.47256 * 58.52617 * 14 13 10 39 39 H 1.09003 * 109.47302 * 178.52245 * 14 13 10 40 40 H 1.09002 * 109.47398 * 300.00305 * 15 13 10 41 41 H 1.09001 * 109.47194 * 60.00486 * 15 13 10 42 42 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 43 43 H 0.96993 * 120.00222 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.40521 * 100.82857 * 25 8 6 45 45 H 1.08994 * 110.41051 * 338.39090 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4431 1.4506 -0.0005 5 6 3.5390 2.8138 -0.0009 6 6 4.7785 3.6142 -0.0009 7 8 5.8603 3.0595 -0.0011 8 7 4.7113 4.9602 -0.0008 9 6 3.4975 5.8097 -0.0011 10 6 3.8379 6.9759 0.9516 11 1 3.4123 7.9072 0.5778 12 6 3.3192 6.6806 2.3604 13 6 5.3788 7.0528 0.9526 14 6 5.9225 6.8130 2.3624 15 6 5.8438 8.4129 0.4283 16 7 7.3078 8.4653 0.4379 17 6 7.9554 9.5931 0.0092 18 1 7.3868 10.4442 -0.3356 19 6 9.3426 9.6427 0.0178 20 7 9.9650 10.7270 -0.3938 21 14 10.3260 8.1710 0.6149 22 1 10.6131 7.2700 -0.5300 23 1 11.6041 8.6381 1.2097 24 1 9.5429 7.4352 1.6398 25 6 5.8346 5.9262 -0.0003 26 8 2.2757 3.2802 0.0049 27 7 1.4686 2.3805 -0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.2441 0.7262 -0.0005 32 1 2.6415 5.2493 0.3747 33 1 3.2965 6.1849 -1.0045 34 1 3.6352 7.4741 3.0377 35 1 2.2306 6.6294 2.3435 36 1 3.7224 5.7278 2.7037 37 1 5.5492 7.5875 3.0324 38 1 5.5937 5.8362 2.7174 39 1 7.0118 6.8443 2.3420 40 1 5.4815 8.5530 -0.5901 41 1 5.4482 9.2029 1.0666 42 1 7.8186 7.7012 0.7480 43 1 10.9343 10.7617 -0.3874 44 1 5.9980 6.3196 -1.0036 45 1 6.7419 5.4538 0.3761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181204592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:31 Heat of formation + Delta-G solvation = 24.007770 kcal Electronic energy + Delta-G solvation = -28139.340741 eV Core-core repulsion = 24162.154203 eV Total energy + Delta-G solvation = -3977.186539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.33726 -40.52836 -39.29010 -38.55650 -35.13080 -33.63459 -33.35530 -32.13300 -31.64843 -30.05248 -28.15278 -27.75214 -26.28699 -25.70914 -23.84061 -23.64976 -22.68202 -21.15113 -20.71557 -18.93006 -18.47522 -18.32534 -17.45715 -17.28757 -16.37824 -16.17828 -15.97613 -15.84839 -15.06101 -14.62528 -14.51249 -14.34769 -14.01471 -13.94760 -13.70188 -13.43728 -12.91439 -12.69337 -12.57655 -12.38169 -12.34131 -12.22641 -11.85516 -11.74171 -11.48732 -11.46502 -11.28675 -10.86213 -10.56616 -10.49277 -10.37980 -10.26778 -10.21992 -10.02512 -9.74475 -9.56805 -8.93291 -8.87916 -7.24226 -5.77151 -3.12933 0.43005 1.71995 2.19262 2.23052 2.73923 2.94133 3.38357 3.41563 3.47209 3.68684 4.21165 4.39012 4.44916 4.59312 4.62280 4.62482 4.68568 4.76998 4.82043 5.01156 5.15961 5.24449 5.28805 5.36171 5.41649 5.47875 5.54584 5.62441 5.70281 5.77667 5.82077 5.89414 5.92579 6.03563 6.11375 6.26488 6.39468 6.48133 6.50657 6.61382 6.67609 7.19756 7.55777 7.79229 7.98276 8.41619 9.20420 9.92821 10.11830 11.41137 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.002919 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.592885 B = 9588.748614 C =10228.751696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.206 3.794 4 C -0.156 4.156 5 C -0.047 4.047 6 C 0.619 3.381 7 O -0.510 6.510 8 N -0.604 5.604 9 C 0.097 3.903 10 C -0.095 4.095 11 H 0.095 0.905 12 C -0.144 4.144 13 C -0.080 4.080 14 C -0.135 4.135 15 C 0.173 3.827 16 N -0.755 5.755 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.880 3.120 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.117 3.883 26 O 0.117 5.883 27 N -0.392 5.392 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.191 0.809 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.089 0.911 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.204 -18.225 2.834 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.187 6.187 3 C 0.009 3.991 4 C -0.179 4.179 5 C -0.113 4.113 6 C 0.404 3.596 7 O -0.385 6.385 8 N -0.337 5.337 9 C -0.026 4.026 10 C -0.115 4.115 11 H 0.113 0.887 12 C -0.201 4.201 13 C -0.081 4.081 14 C -0.192 4.192 15 C 0.045 3.955 16 N -0.401 5.401 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.004 4.004 26 O 0.052 5.948 27 N -0.117 5.117 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.208 0.792 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.716 -18.303 2.739 28.532 hybrid contribution 1.177 -1.384 0.348 1.850 sum -20.539 -19.688 3.087 28.618 Atomic orbital electron populations 1.23114 0.76484 1.04341 1.02511 1.86227 1.22831 1.20341 1.89313 1.21864 0.90587 0.85843 1.00850 1.22179 0.94509 0.94889 1.06341 1.24041 0.86890 0.93688 1.06673 1.15984 0.85121 0.80310 0.78143 1.90913 1.26526 1.70245 1.50861 1.48855 1.10824 1.03670 1.70308 1.22801 0.87471 0.91624 1.00691 1.22129 0.95156 0.98254 0.95912 0.88693 1.21927 1.00116 1.02111 0.95926 1.21804 0.94047 0.96168 0.96113 1.21904 1.01535 1.00881 0.94900 1.20701 0.85352 0.91650 0.97777 1.42754 1.00840 1.16876 1.79626 1.19026 0.89926 0.93063 1.35338 0.89191 1.24660 0.96250 0.96882 1.01225 1.69695 1.08109 1.27205 1.53131 0.86621 0.80191 0.83271 0.78856 1.20947 1.21727 1.20277 1.22683 0.89278 0.87544 1.00928 1.85023 1.11884 1.29368 1.68528 1.73980 1.16129 0.96751 1.24827 0.87433 0.92078 0.92064 0.79214 0.89310 0.89952 0.91633 0.92821 0.92566 0.91821 0.93048 0.92091 0.95113 0.94922 0.80509 0.93056 0.89321 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.73 101.05 1.08 1.27 16 2 O -0.28 -2.67 10.57 -18.89 -0.20 -2.87 16 3 C 0.21 2.21 8.00 -16.72 -0.13 2.08 16 4 C -0.16 -1.67 10.97 -38.77 -0.43 -2.10 16 5 C -0.05 -0.54 7.11 -36.36 -0.26 -0.80 16 6 C 0.62 8.39 7.91 -12.47 -0.10 8.29 16 7 O -0.51 -8.48 17.18 5.30 0.09 -8.39 16 8 N -0.60 -7.58 3.32 -170.51 -0.57 -8.15 16 9 C 0.10 0.96 6.27 -2.41 -0.02 0.94 16 10 C -0.09 -0.99 3.31 -89.22 -0.30 -1.28 16 11 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 12 C -0.14 -1.35 7.92 37.16 0.29 -1.06 16 13 C -0.08 -1.09 0.73 -153.09 -0.11 -1.21 16 14 C -0.14 -1.89 7.07 37.15 0.26 -1.63 16 15 C 0.17 3.00 4.87 -4.04 -0.02 2.98 16 16 N -0.75 -16.89 4.93 -59.91 -0.30 -17.19 16 17 C -0.24 -6.68 10.47 -15.06 -0.16 -6.84 16 18 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 21 Si 0.88 21.99 27.73 -169.99 -4.71 17.28 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 25 C 0.12 1.68 5.71 -2.38 -0.01 1.67 16 26 O 0.12 1.27 8.49 15.51 0.13 1.40 16 27 N -0.39 -4.36 11.50 30.47 0.35 -4.01 16 28 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.09 0.79 5.32 -51.93 -0.28 0.52 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.63 6.84 -51.93 -0.36 0.27 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.57 6.76 -51.92 -0.35 0.22 16 37 H 0.06 0.84 6.89 -51.93 -0.36 0.48 16 38 H 0.05 0.66 6.71 -51.93 -0.35 0.31 16 39 H 0.06 1.00 6.78 -51.93 -0.35 0.64 16 40 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.36 8.02 4.05 -40.82 -0.17 7.85 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.09 1.32 7.83 -51.93 -0.41 0.92 16 45 H 0.09 1.39 7.60 -51.93 -0.39 1.00 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -32.76 362.88 -5.32 -38.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.38 Total: 4.26 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 0.02 Total: 2.39 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.26 Total: -57.61 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.02 Total: -9.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.76 -5.32 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181204592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.085 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds