Wall clock time and date at job start Tue Mar 31 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35727 * 116.99547 * 2 1 4 4 C 1.41860 * 126.78419 * 180.02562 * 3 2 1 5 5 C 1.36664 * 103.81247 * 179.97438 * 4 3 2 6 6 C 1.47541 * 126.87355 * 179.97438 * 5 4 3 7 7 O 1.21578 * 120.00685 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99345 * 180.02562 * 6 5 4 9 9 C 1.48146 * 127.84246 * 359.97438 * 8 6 5 10 10 C 1.54386 * 104.61890 * 140.39015 * 9 8 6 11 11 H 1.09006 * 110.34283 * 142.73841 * 10 9 8 12 12 C 1.52995 * 110.34584 * 264.99401 * 10 9 8 13 13 C 1.54286 * 104.96248 * 23.86937 * 10 9 8 14 14 C 1.52994 * 110.34237 * 241.02239 * 13 10 9 15 15 C 1.53000 * 110.34248 * 118.86654 * 13 10 9 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 13 10 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00562 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99699 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00457 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.47392 * 329.99935 * 21 19 17 25 25 C 1.48152 * 127.83563 * 179.97438 * 8 6 5 26 26 O 1.34659 * 106.23895 * 0.24243 * 5 4 3 27 27 N 1.20869 * 111.63311 * 359.56007 * 26 5 4 28 28 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47050 * 299.99910 * 1 2 3 30 30 H 1.08993 * 109.47581 * 59.99951 * 1 2 3 31 31 H 1.07999 * 128.08772 * 359.97125 * 4 3 2 32 32 H 1.09000 * 110.40469 * 21.60472 * 9 8 6 33 33 H 1.08997 * 110.40832 * 259.17770 * 9 8 6 34 34 H 1.09002 * 109.47315 * 175.53529 * 12 10 9 35 35 H 1.08998 * 109.47517 * 295.54335 * 12 10 9 36 36 H 1.09007 * 109.46860 * 55.53694 * 12 10 9 37 37 H 1.08996 * 109.47469 * 298.52526 * 14 13 10 38 38 H 1.09004 * 109.47256 * 58.52617 * 14 13 10 39 39 H 1.09003 * 109.47302 * 178.52245 * 14 13 10 40 40 H 1.09002 * 109.47398 * 300.00305 * 15 13 10 41 41 H 1.09001 * 109.47194 * 60.00486 * 15 13 10 42 42 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 43 43 H 0.96993 * 120.00222 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.40521 * 100.82857 * 25 8 6 45 45 H 1.08994 * 110.41051 * 338.39090 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4431 1.4506 -0.0005 5 6 3.5390 2.8138 -0.0009 6 6 4.7785 3.6142 -0.0009 7 8 5.8603 3.0595 -0.0011 8 7 4.7113 4.9602 -0.0008 9 6 3.4975 5.8097 -0.0011 10 6 3.8379 6.9759 0.9516 11 1 3.4123 7.9072 0.5778 12 6 3.3192 6.6806 2.3604 13 6 5.3788 7.0528 0.9526 14 6 5.9225 6.8130 2.3624 15 6 5.8438 8.4129 0.4283 16 7 7.3078 8.4653 0.4379 17 6 7.9554 9.5931 0.0092 18 1 7.3868 10.4442 -0.3356 19 6 9.3426 9.6427 0.0178 20 7 9.9650 10.7270 -0.3938 21 14 10.3260 8.1710 0.6149 22 1 10.6131 7.2700 -0.5300 23 1 11.6041 8.6381 1.2097 24 1 9.5429 7.4352 1.6398 25 6 5.8346 5.9262 -0.0003 26 8 2.2757 3.2802 0.0049 27 7 1.4686 2.3805 -0.0001 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.2441 0.7262 -0.0005 32 1 2.6415 5.2493 0.3747 33 1 3.2965 6.1849 -1.0045 34 1 3.6352 7.4741 3.0377 35 1 2.2306 6.6294 2.3435 36 1 3.7224 5.7278 2.7037 37 1 5.5492 7.5875 3.0324 38 1 5.5937 5.8362 2.7174 39 1 7.0118 6.8443 2.3420 40 1 5.4815 8.5530 -0.5901 41 1 5.4482 9.2029 1.0666 42 1 7.8186 7.7012 0.7480 43 1 10.9343 10.7617 -0.3874 44 1 5.9980 6.3196 -1.0036 45 1 6.7419 5.4538 0.3761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181204592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:30 Heat of formation + Delta-G solvation = 0.085820 kcal Electronic energy + Delta-G solvation = -28140.378075 eV Core-core repulsion = 24162.154203 eV Total energy + Delta-G solvation = -3978.223872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.16859 -41.57966 -39.97461 -39.67286 -36.69735 -34.77862 -34.39080 -33.33203 -33.00181 -31.46903 -28.91710 -28.57547 -27.68360 -26.70326 -25.09759 -24.57570 -23.99891 -22.35081 -21.60877 -20.19836 -19.83295 -19.16577 -18.84570 -18.05801 -17.43544 -17.22643 -16.82398 -16.59010 -16.48505 -15.82621 -15.79932 -15.50507 -15.22762 -15.06347 -14.81930 -14.63972 -14.41047 -13.93561 -13.61499 -13.42749 -13.22310 -13.18552 -12.93498 -12.90683 -12.69727 -12.62514 -12.48979 -12.36313 -12.08661 -11.84210 -11.60321 -11.51167 -11.40703 -11.24213 -11.09585 -10.95159 -10.49955 -9.93224 -9.24206 -7.99940 -5.31394 -0.46541 0.89937 1.22759 1.38465 1.40444 1.46661 1.52019 1.73981 2.04776 2.49267 2.88901 3.28377 3.32780 3.48872 3.53881 3.63256 3.76102 3.93891 3.97011 4.20915 4.24500 4.25555 4.27545 4.28837 4.50384 4.51749 4.62931 4.65077 4.66685 4.77717 4.83463 4.87612 5.01217 5.02831 5.08613 5.14286 5.26397 5.35730 5.41341 5.58685 5.80296 5.80804 6.20136 6.24640 6.59072 6.88786 7.11860 7.89229 8.05828 9.21663 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.002919 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.592885 B = 9588.748614 C =10228.751696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.204 3.796 4 C -0.152 4.152 5 C -0.052 4.052 6 C 0.621 3.379 7 O -0.548 6.548 8 N -0.601 5.601 9 C 0.097 3.903 10 C -0.087 4.087 11 H 0.110 0.890 12 C -0.141 4.141 13 C -0.071 4.071 14 C -0.131 4.131 15 C 0.170 3.830 16 N -0.757 5.757 17 C -0.223 4.223 18 H 0.063 0.937 19 C -0.062 4.062 20 N -0.983 5.983 21 Si 0.942 3.058 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.253 1.253 25 C 0.117 3.883 26 O 0.122 5.878 27 N -0.395 5.395 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.202 0.798 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.768 -20.145 3.571 31.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.196 6.196 3 C 0.007 3.993 4 C -0.175 4.175 5 C -0.118 4.118 6 C 0.407 3.593 7 O -0.427 6.427 8 N -0.332 5.332 9 C -0.024 4.024 10 C -0.107 4.107 11 H 0.129 0.871 12 C -0.198 4.198 13 C -0.073 4.073 14 C -0.189 4.189 15 C 0.044 3.956 16 N -0.403 5.403 17 C -0.354 4.354 18 H 0.081 0.919 19 C -0.254 4.254 20 N -0.635 5.635 21 Si 0.770 3.230 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.178 1.178 25 C -0.005 4.005 26 O 0.057 5.943 27 N -0.120 5.120 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.219 0.781 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.198 0.802 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.369 -20.250 3.492 31.876 hybrid contribution 1.801 -0.777 0.085 1.963 sum -22.568 -21.027 3.577 31.052 Atomic orbital electron populations 1.23405 0.74673 1.06363 1.02638 1.86238 1.24640 1.19675 1.89064 1.21955 0.90640 0.86180 1.00505 1.22400 0.95047 0.94863 1.05194 1.23629 0.86568 0.93638 1.07968 1.16133 0.85259 0.80444 0.77430 1.90890 1.28070 1.71017 1.52691 1.48855 1.11207 1.03482 1.69622 1.23005 0.86737 0.91081 1.01616 1.22136 0.92228 0.99250 0.97057 0.87149 1.21910 1.01422 1.01644 0.94841 1.21662 0.96592 0.93536 0.95461 1.21874 0.99781 1.01955 0.95248 1.20893 0.82357 0.94095 0.98284 1.42797 1.03044 1.15344 1.79139 1.19043 0.89892 0.93478 1.33020 0.91938 1.25390 0.97582 0.99653 1.02736 1.69861 1.08114 1.29684 1.55794 0.85601 0.78469 0.80061 0.78828 1.20839 1.22421 1.17795 1.22527 0.89371 0.88072 1.00553 1.85008 1.11436 1.29285 1.68589 1.73956 1.16080 0.96999 1.25004 0.84587 0.91890 0.91938 0.78119 0.87777 0.88407 0.91723 0.90731 0.93253 0.90949 0.91813 0.94705 0.94603 0.94601 0.80245 0.93502 0.90053 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.73 113.37 1.22 1.44 16 2 O -0.29 -4.91 10.57 -90.49 -0.96 -5.87 16 3 C 0.20 3.98 8.00 85.78 0.69 4.67 16 4 C -0.15 -3.01 10.97 22.80 0.25 -2.76 16 5 C -0.05 -1.11 7.11 24.36 0.17 -0.94 16 6 C 0.62 16.13 7.91 86.70 0.69 16.81 16 7 O -0.55 -18.09 17.18 -3.96 -0.07 -18.16 16 8 N -0.60 -14.10 3.32 -811.63 -2.69 -16.79 16 9 C 0.10 1.64 6.27 86.53 0.54 2.18 16 10 C -0.09 -1.55 3.31 -9.89 -0.03 -1.58 16 11 H 0.11 1.70 7.71 -2.38 -0.02 1.68 16 12 C -0.14 -2.18 7.92 71.98 0.57 -1.61 16 13 C -0.07 -1.82 0.73 -51.26 -0.04 -1.86 16 14 C -0.13 -3.46 7.07 71.98 0.51 -2.95 16 15 C 0.17 5.67 4.87 86.38 0.42 6.09 16 16 N -0.76 -33.50 4.93 -343.45 -1.69 -35.20 16 17 C -0.22 -12.36 10.47 84.03 0.88 -11.48 16 18 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 19 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 20 N -0.98 -62.84 13.97 21.65 0.30 -62.53 16 21 Si 0.94 45.92 27.73 68.60 1.90 47.83 16 22 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 25 C 0.12 3.25 5.71 86.55 0.49 3.74 16 26 O 0.12 2.37 8.49 65.67 0.56 2.93 16 27 N -0.40 -7.88 11.50 -172.02 -1.98 -9.86 16 28 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.10 1.50 5.32 -2.39 -0.01 1.48 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.03 6.84 -2.39 -0.02 1.02 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.84 6.76 -2.38 -0.02 0.83 16 37 H 0.07 1.77 6.89 -2.39 -0.02 1.75 16 38 H 0.06 1.52 6.71 -2.38 -0.02 1.50 16 39 H 0.03 1.09 6.78 -2.39 -0.02 1.07 16 40 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.36 15.84 4.05 -92.71 -0.38 15.47 16 43 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.08 2.37 7.83 -2.39 -0.02 2.35 16 45 H 0.07 2.13 7.60 -2.39 -0.02 2.11 16 Total: -1.00 -71.77 362.88 2.78 -68.99 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.58 Total: 20.09 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.83 Total: 8.58 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -6.06 Total: -124.38 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.47 Total: -21.10 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Total: -71.77 2.78 -68.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181204592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.076 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds