Wall clock time and date at job start Tue Mar 31 2020 14:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35730 * 117.00009 * 2 1 4 4 C 1.41858 * 126.78611 * 180.32263 * 3 2 1 5 5 C 1.36667 * 103.80955 * 180.13777 * 4 3 2 6 6 C 1.47541 * 126.87767 * 179.87976 * 5 4 3 7 7 O 1.21576 * 119.99984 * 352.77479 * 6 5 4 8 8 N 1.34776 * 119.99753 * 172.77672 * 6 5 4 9 9 C 1.46921 * 120.63389 * 353.05696 * 8 6 5 10 10 C 1.53193 * 108.77669 * 233.58739 * 9 8 6 11 11 C 1.53035 * 109.31362 * 305.36632 * 10 9 8 12 12 H 1.09001 * 109.46229 * 301.34508 * 11 10 9 13 13 C 1.53006 * 109.46138 * 181.38351 * 11 10 9 14 14 N 1.46498 * 109.46983 * 64.93043 * 13 11 10 15 15 C 1.36941 * 119.99839 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99708 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99725 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47065 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47006 * 120.00404 * 19 17 15 22 22 H 1.48500 * 109.47080 * 239.99813 * 19 17 15 23 23 C 1.53046 * 109.53966 * 61.36419 * 11 10 9 24 24 H 1.09005 * 109.49632 * 178.68478 * 23 11 10 25 25 C 1.52993 * 109.49714 * 58.58713 * 23 11 10 26 26 C 1.46931 * 120.62862 * 173.03528 * 8 6 5 27 27 O 1.34661 * 106.24233 * 359.61781 * 5 4 3 28 28 N 1.20873 * 111.63092 * 0.26332 * 27 5 4 29 29 H 1.09007 * 109.47167 * 300.00471 * 1 2 3 30 30 H 1.09004 * 109.46903 * 59.99528 * 1 2 3 31 31 H 1.08993 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.07992 * 128.09454 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.58711 * 353.37459 * 9 8 6 34 34 H 1.08995 * 109.58883 * 113.66066 * 9 8 6 35 35 H 1.09006 * 109.49491 * 65.31707 * 10 9 8 36 36 H 1.09001 * 109.50172 * 185.37642 * 10 9 8 37 37 H 1.08997 * 109.47288 * 184.92999 * 13 11 10 38 38 H 1.08997 * 109.46813 * 304.92817 * 13 11 10 39 39 H 0.97005 * 119.99914 * 359.97438 * 14 13 11 40 40 H 0.97006 * 119.99333 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47151 * 300.16401 * 25 23 11 42 42 H 1.09000 * 109.47280 * 60.16328 * 25 23 11 43 43 H 1.08997 * 109.47340 * 180.16488 * 25 23 11 44 44 H 1.09007 * 109.58606 * 6.62647 * 26 8 6 45 45 H 1.08993 * 109.58719 * 246.20095 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0064 5 6 3.5391 2.8138 -0.0002 6 6 4.7785 3.6142 -0.0005 7 8 5.8562 3.0659 0.1257 8 7 4.7159 4.9532 -0.1407 9 6 3.4401 5.6152 -0.4453 10 6 3.6241 6.4923 -1.6877 11 6 4.7925 7.4539 -1.4599 12 1 4.5916 8.0681 -0.5821 13 6 4.9573 8.3552 -2.6854 14 7 3.7741 9.2072 -2.8276 15 6 3.6951 10.1021 -3.8611 16 1 4.5051 10.1800 -4.5711 17 6 2.5737 10.9091 -3.9961 18 7 1.5867 10.8145 -3.1305 19 14 2.4662 12.1303 -5.4055 20 1 3.6973 12.0430 -6.2312 21 1 1.2829 11.8142 -6.2452 22 1 2.3330 13.5051 -4.8602 23 6 6.0783 6.6539 -1.2389 24 1 6.9142 7.3396 -1.0999 25 6 6.3426 5.7655 -2.4561 26 6 5.9222 5.7787 0.0087 27 8 2.2758 3.2802 0.0003 28 7 1.4686 2.3805 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.2442 0.7262 -0.0126 33 1 2.6753 4.8631 -0.6389 34 1 3.1386 6.2339 0.3999 35 1 3.8355 5.8608 -2.5507 36 1 2.7129 7.0625 -1.8687 37 1 5.8419 8.9797 -2.5608 38 1 5.0705 7.7387 -3.5771 39 1 3.0464 9.1370 -2.1900 40 1 0.8033 11.3787 -3.2247 41 1 5.5057 5.0812 -2.5951 42 1 6.4536 6.3887 -3.3435 43 1 7.2568 5.1937 -2.2970 44 1 6.7950 5.1344 0.1147 45 1 5.8243 6.4126 0.8899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184220334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:49 Heat of formation + Delta-G solvation = 16.755769 kcal Electronic energy + Delta-G solvation = -27966.039226 eV Core-core repulsion = 23988.538217 eV Total energy + Delta-G solvation = -3977.501009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.28944 -40.50868 -39.20304 -38.25149 -35.12906 -33.66822 -33.48540 -32.20600 -31.55190 -30.37402 -28.03873 -27.15382 -27.00291 -24.29403 -23.80608 -23.16773 -22.97741 -21.46740 -20.83066 -19.03398 -18.26966 -18.13648 -17.29642 -17.07250 -16.40205 -16.16889 -15.94309 -15.44527 -15.14884 -14.90804 -14.40922 -14.27576 -14.08676 -13.83067 -13.73776 -13.48165 -12.96136 -12.61000 -12.54536 -12.40690 -12.27429 -12.17048 -11.76384 -11.60440 -11.38836 -11.06097 -10.94899 -10.80078 -10.56414 -10.36033 -10.22975 -10.16493 -10.06541 -9.94244 -9.64952 -9.63766 -8.86669 -8.77061 -6.90696 -5.77018 -3.04853 0.47930 1.79919 2.25868 2.30966 2.71321 3.01612 3.42994 3.49005 3.50943 3.76127 4.23115 4.47724 4.58354 4.70782 4.78712 4.82276 4.88101 4.91199 4.95937 5.10447 5.11306 5.24012 5.32736 5.51737 5.54342 5.59572 5.64610 5.74485 5.80303 5.85936 6.04176 6.07991 6.13861 6.27744 6.34581 6.40051 6.45606 6.56868 6.63573 6.79901 6.93077 7.05152 7.61527 7.70861 7.84665 8.42451 9.53729 10.12029 10.46403 11.45973 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.002950 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.007726 B = 9489.868801 C =10918.142551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.205 3.795 4 C -0.155 4.155 5 C -0.054 4.054 6 C 0.603 3.397 7 O -0.516 6.516 8 N -0.588 5.588 9 C 0.094 3.906 10 C -0.126 4.126 11 C -0.090 4.090 12 H 0.074 0.926 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.099 4.099 24 H 0.085 0.915 25 C -0.146 4.146 26 C 0.117 3.883 27 O 0.120 5.880 28 N -0.391 5.391 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.018 0.982 38 H 0.022 0.978 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -19.756 9.147 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.007 3.993 4 C -0.178 4.178 5 C -0.119 4.119 6 C 0.388 3.612 7 O -0.393 6.393 8 N -0.319 5.319 9 C -0.028 4.028 10 C -0.164 4.164 11 C -0.109 4.109 12 H 0.092 0.908 13 C 0.031 3.969 14 N -0.377 5.377 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.118 4.118 24 H 0.104 0.896 25 C -0.203 4.203 26 C -0.004 4.004 27 O 0.056 5.944 28 N -0.116 5.116 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.207 0.793 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.635 -19.836 9.064 21.968 hybrid contribution -0.172 0.351 -0.614 0.728 sum 2.462 -19.485 8.450 21.381 Atomic orbital electron populations 1.23119 0.76435 1.04292 1.02639 1.86213 1.22874 1.20382 1.89361 1.21872 0.90567 0.85855 1.00967 1.22159 0.94473 0.94856 1.06294 1.24059 0.87127 0.93758 1.06998 1.16571 0.85058 0.81676 0.77945 1.90855 1.26799 1.70724 1.50908 1.48041 1.11317 1.04939 1.67640 1.22312 0.83830 0.97364 0.99281 1.21974 1.00575 0.97573 0.96302 1.21335 0.93404 0.95940 1.00200 0.90806 1.20709 0.90988 0.91367 0.93842 1.42392 1.18380 1.43731 1.33160 1.19267 1.01657 1.12144 1.03739 0.91247 1.24722 0.96878 1.00397 0.99048 1.69663 1.08309 1.42831 1.37429 0.86139 0.77301 0.81125 0.81774 1.20613 1.21913 1.21914 1.21487 0.98835 0.96855 0.94633 0.89642 1.21873 1.01081 0.99476 0.97912 1.21851 0.87008 0.93394 0.98186 1.85135 1.11931 1.28950 1.68388 1.74008 1.16498 0.96819 1.24295 0.92061 0.91958 0.87474 0.79316 0.88695 0.90205 0.91263 0.89001 0.96433 0.96061 0.78279 0.93609 0.92685 0.91810 0.93138 0.88723 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.88 10.57 -18.90 -0.20 -3.08 16 3 C 0.20 2.34 8.00 -16.72 -0.13 2.21 16 4 C -0.16 -1.68 10.98 -38.77 -0.43 -2.11 16 5 C -0.05 -0.63 6.90 -36.36 -0.25 -0.88 16 6 C 0.60 7.57 7.68 -12.47 -0.10 7.47 16 7 O -0.52 -7.52 16.34 5.30 0.09 -7.43 16 8 N -0.59 -6.85 2.41 -174.00 -0.42 -7.27 16 9 C 0.09 1.10 6.15 -3.71 -0.02 1.08 16 10 C -0.13 -1.77 4.90 -26.61 -0.13 -1.90 16 11 C -0.09 -1.31 1.96 -90.57 -0.18 -1.48 16 12 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 13 C 0.16 3.00 5.19 -4.04 -0.02 2.98 16 14 N -0.73 -17.77 5.32 -59.91 -0.32 -18.09 16 15 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.10 -1.17 2.72 -90.50 -0.25 -1.42 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 C -0.15 -1.80 8.38 37.15 0.31 -1.49 16 26 C 0.12 1.28 5.84 -3.71 -0.02 1.26 16 27 O 0.12 1.44 7.91 15.50 0.12 1.56 16 28 N -0.39 -4.82 11.50 30.47 0.35 -4.47 16 29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.10 1.09 4.26 -52.62 -0.22 0.87 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 36 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 39 H 0.38 9.67 6.84 -40.82 -0.28 9.40 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 42 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.05 7.00 -51.93 -0.36 0.68 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -31.74 361.24 -5.95 -37.69 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.34 Total: 5.58 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.38 Total: -0.16 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.34 Total: -56.81 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.01 Total: -8.95 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.74 -5.95 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184220334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.446 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds