Wall clock time and date at job start Tue Mar 31 2020 14:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35730 * 117.00009 * 2 1 4 4 C 1.41858 * 126.78611 * 180.32263 * 3 2 1 5 5 C 1.36667 * 103.80955 * 180.13777 * 4 3 2 6 6 C 1.47541 * 126.87767 * 179.87976 * 5 4 3 7 7 O 1.21576 * 119.99984 * 352.77479 * 6 5 4 8 8 N 1.34776 * 119.99753 * 172.77672 * 6 5 4 9 9 C 1.46921 * 120.63389 * 353.05696 * 8 6 5 10 10 C 1.53193 * 108.77669 * 233.58739 * 9 8 6 11 11 C 1.53035 * 109.31362 * 305.36632 * 10 9 8 12 12 H 1.09001 * 109.46229 * 301.34508 * 11 10 9 13 13 C 1.53006 * 109.46138 * 181.38351 * 11 10 9 14 14 N 1.46498 * 109.46983 * 64.93043 * 13 11 10 15 15 C 1.36941 * 119.99839 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99708 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99725 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47065 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47006 * 120.00404 * 19 17 15 22 22 H 1.48500 * 109.47080 * 239.99813 * 19 17 15 23 23 C 1.53046 * 109.53966 * 61.36419 * 11 10 9 24 24 H 1.09005 * 109.49632 * 178.68478 * 23 11 10 25 25 C 1.52993 * 109.49714 * 58.58713 * 23 11 10 26 26 C 1.46931 * 120.62862 * 173.03528 * 8 6 5 27 27 O 1.34661 * 106.24233 * 359.61781 * 5 4 3 28 28 N 1.20873 * 111.63092 * 0.26332 * 27 5 4 29 29 H 1.09007 * 109.47167 * 300.00471 * 1 2 3 30 30 H 1.09004 * 109.46903 * 59.99528 * 1 2 3 31 31 H 1.08993 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.07992 * 128.09454 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.58711 * 353.37459 * 9 8 6 34 34 H 1.08995 * 109.58883 * 113.66066 * 9 8 6 35 35 H 1.09006 * 109.49491 * 65.31707 * 10 9 8 36 36 H 1.09001 * 109.50172 * 185.37642 * 10 9 8 37 37 H 1.08997 * 109.47288 * 184.92999 * 13 11 10 38 38 H 1.08997 * 109.46813 * 304.92817 * 13 11 10 39 39 H 0.97005 * 119.99914 * 359.97438 * 14 13 11 40 40 H 0.97006 * 119.99333 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47151 * 300.16401 * 25 23 11 42 42 H 1.09000 * 109.47280 * 60.16328 * 25 23 11 43 43 H 1.08997 * 109.47340 * 180.16488 * 25 23 11 44 44 H 1.09007 * 109.58606 * 6.62647 * 26 8 6 45 45 H 1.08993 * 109.58719 * 246.20095 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0064 5 6 3.5391 2.8138 -0.0002 6 6 4.7785 3.6142 -0.0005 7 8 5.8562 3.0659 0.1257 8 7 4.7159 4.9532 -0.1407 9 6 3.4401 5.6152 -0.4453 10 6 3.6241 6.4923 -1.6877 11 6 4.7925 7.4539 -1.4599 12 1 4.5916 8.0681 -0.5821 13 6 4.9573 8.3552 -2.6854 14 7 3.7741 9.2072 -2.8276 15 6 3.6951 10.1021 -3.8611 16 1 4.5051 10.1800 -4.5711 17 6 2.5737 10.9091 -3.9961 18 7 1.5867 10.8145 -3.1305 19 14 2.4662 12.1303 -5.4055 20 1 3.6973 12.0430 -6.2312 21 1 1.2829 11.8142 -6.2452 22 1 2.3330 13.5051 -4.8602 23 6 6.0783 6.6539 -1.2389 24 1 6.9142 7.3396 -1.0999 25 6 6.3426 5.7655 -2.4561 26 6 5.9222 5.7787 0.0087 27 8 2.2758 3.2802 0.0003 28 7 1.4686 2.3805 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.2442 0.7262 -0.0126 33 1 2.6753 4.8631 -0.6389 34 1 3.1386 6.2339 0.3999 35 1 3.8355 5.8608 -2.5507 36 1 2.7129 7.0625 -1.8687 37 1 5.8419 8.9797 -2.5608 38 1 5.0705 7.7387 -3.5771 39 1 3.0464 9.1370 -2.1900 40 1 0.8033 11.3787 -3.2247 41 1 5.5057 5.0812 -2.5951 42 1 6.4536 6.3887 -3.3435 43 1 7.2568 5.1937 -2.2970 44 1 6.7950 5.1344 0.1147 45 1 5.8243 6.4126 0.8899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184220334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:49 Heat of formation + Delta-G solvation = -5.010398 kcal Electronic energy + Delta-G solvation = -27966.983077 eV Core-core repulsion = 23988.538217 eV Total energy + Delta-G solvation = -3978.444861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.17790 -41.52355 -39.96024 -39.37164 -36.63075 -35.03959 -34.37509 -33.48372 -32.63575 -31.99406 -28.72416 -28.47514 -28.07537 -25.76382 -24.77272 -24.53441 -23.99705 -22.74191 -21.82815 -20.07101 -19.42718 -19.15639 -18.75243 -18.13388 -17.46668 -17.02984 -16.82034 -16.67607 -16.30132 -15.90817 -15.73485 -15.49596 -15.32153 -15.11838 -14.91927 -14.72400 -14.38771 -13.82127 -13.70159 -13.50839 -13.17725 -12.95863 -12.93517 -12.82038 -12.69307 -12.56678 -12.38999 -12.12902 -12.01333 -11.88910 -11.62290 -11.53218 -11.20908 -11.13405 -11.05505 -10.87143 -10.47798 -9.76270 -8.93130 -7.92307 -5.19262 -0.42796 0.92838 1.34557 1.48695 1.48962 1.53100 1.58771 1.76651 2.11462 2.58144 2.91754 3.32972 3.41644 3.62055 3.75918 3.81974 3.85136 3.97329 4.04844 4.23451 4.25004 4.28599 4.34541 4.46716 4.47161 4.55146 4.62983 4.69859 4.75749 4.78695 4.84360 4.93298 5.00146 5.11738 5.19719 5.21178 5.28603 5.32373 5.48846 5.54968 5.63386 5.80967 6.07498 6.31162 6.66736 6.94095 7.37841 8.15604 8.38667 9.31217 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.002950 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.007726 B = 9489.868801 C =10918.142551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.289 6.289 3 C 0.202 3.798 4 C -0.149 4.149 5 C -0.062 4.062 6 C 0.607 3.393 7 O -0.537 6.537 8 N -0.585 5.585 9 C 0.104 3.896 10 C -0.120 4.120 11 C -0.079 4.079 12 H 0.074 0.926 13 C 0.158 3.842 14 N -0.743 5.743 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.294 1.294 22 H -0.294 1.294 23 C -0.090 4.090 24 H 0.100 0.900 25 C -0.143 4.143 26 C 0.119 3.881 27 O 0.115 5.885 28 N -0.405 5.405 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.207 0.793 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -20.680 9.531 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.195 6.195 3 C 0.005 3.995 4 C -0.171 4.171 5 C -0.128 4.128 6 C 0.392 3.608 7 O -0.415 6.415 8 N -0.316 5.316 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.098 4.098 12 H 0.092 0.908 13 C 0.032 3.968 14 N -0.386 5.386 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.267 4.267 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.193 1.193 21 H -0.222 1.222 22 H -0.221 1.221 23 C -0.110 4.110 24 H 0.118 0.882 25 C -0.200 4.200 26 C -0.002 4.002 27 O 0.052 5.948 28 N -0.131 5.131 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.224 0.776 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.514 -20.774 9.443 23.088 hybrid contribution -0.426 0.562 -0.750 1.030 sum 3.088 -20.211 8.693 22.217 Atomic orbital electron populations 1.23385 0.74859 1.06330 1.02472 1.86223 1.24461 1.19703 1.89125 1.22059 0.90930 0.86070 1.00465 1.22433 0.94750 0.94862 1.05085 1.23994 0.86903 0.94063 1.07790 1.16580 0.84959 0.81735 0.77496 1.90844 1.27540 1.71066 1.52039 1.48054 1.11489 1.04852 1.67174 1.22197 0.84027 0.97153 0.98457 1.21837 0.99162 0.97405 0.97402 1.21219 0.95113 0.95545 0.97956 0.90780 1.20857 0.88942 0.91213 0.95818 1.42588 1.19739 1.43977 1.32277 1.19632 1.01399 1.12105 1.04144 0.91040 1.25483 0.96920 1.02613 1.01641 1.69804 1.08796 1.43935 1.39230 0.85147 0.77394 0.78626 0.79055 1.19297 1.22182 1.22088 1.21436 0.97616 0.96830 0.95090 0.88196 1.21832 1.01266 0.99249 0.97663 1.21927 0.86836 0.93326 0.98141 1.85107 1.11986 1.29001 1.68724 1.73987 1.16835 0.97288 1.25031 0.92037 0.92296 0.84401 0.77594 0.88396 0.88885 0.91941 0.91620 0.96385 0.96367 0.79157 0.94086 0.93675 0.92839 0.91915 0.88281 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.52 16 2 O -0.29 -5.51 10.57 -90.54 -0.96 -6.47 16 3 C 0.20 4.42 8.00 85.78 0.69 5.10 16 4 C -0.15 -3.03 10.98 22.80 0.25 -2.78 16 5 C -0.06 -1.38 6.90 24.36 0.17 -1.21 16 6 C 0.61 14.36 7.68 86.70 0.67 15.02 16 7 O -0.54 -14.77 16.34 -3.95 -0.06 -14.83 16 8 N -0.58 -12.68 2.41 -822.67 -1.98 -14.66 16 9 C 0.10 2.31 6.15 86.36 0.53 2.85 16 10 C -0.12 -3.35 4.90 30.67 0.15 -3.20 16 11 C -0.08 -2.24 1.96 -10.76 -0.02 -2.26 16 12 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 13 C 0.16 5.93 5.19 86.38 0.45 6.38 16 14 N -0.74 -36.36 5.32 -343.45 -1.83 -38.19 16 15 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 18 N -0.97 -58.17 13.06 21.65 0.28 -57.88 16 19 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 23 C -0.09 -1.98 2.72 -10.72 -0.03 -2.01 16 24 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 25 C -0.14 -3.32 8.38 71.98 0.60 -2.72 16 26 C 0.12 2.31 5.84 86.36 0.50 2.81 16 27 O 0.12 2.68 7.91 65.65 0.52 3.20 16 28 N -0.40 -9.70 11.50 -172.00 -1.98 -11.67 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 31 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.21 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.10 2.19 4.26 -13.38 -0.06 2.13 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.81 6.33 -2.38 -0.02 1.80 16 36 H 0.07 2.20 7.15 -2.39 -0.02 2.18 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.02 0.71 6.74 -2.39 -0.02 0.69 16 39 H 0.38 19.34 6.84 -92.70 -0.63 18.70 16 40 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 41 H 0.04 1.13 5.97 -2.39 -0.01 1.12 16 42 H 0.05 1.34 6.59 -2.39 -0.02 1.32 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.10 1.93 7.00 -2.38 -0.02 1.92 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -67.31 361.24 2.84 -64.47 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.34 Total: 24.81 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.48 Total: 3.34 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -5.51 Total: -122.40 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.50 Total: -18.10 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -67.31 2.84 -64.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184220334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.461 kcal (2) G-P(sol) polarization free energy of solvation -67.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds