Wall clock time and date at job start Tue Mar 31 2020 14:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35730 * 116.99695 * 2 1 4 4 C 1.41859 * 126.78482 * 180.02562 * 3 2 1 5 5 C 1.36666 * 103.81046 * 180.02562 * 4 3 2 6 6 C 1.47545 * 126.87910 * 179.97438 * 5 4 3 7 7 O 1.21577 * 119.99837 * 7.23350 * 6 5 4 8 8 N 1.34778 * 120.00069 * 187.23025 * 6 5 4 9 9 C 1.46925 * 120.62930 * 6.98969 * 8 6 5 10 10 C 1.53185 * 108.77489 * 126.36738 * 9 8 6 11 11 C 1.53045 * 109.31265 * 54.63369 * 10 9 8 12 12 H 1.09001 * 109.45884 * 58.64355 * 11 10 9 13 13 C 1.52998 * 109.46040 * 178.61401 * 11 10 9 14 14 N 1.46498 * 109.47217 * 294.99994 * 13 11 10 15 15 C 1.36935 * 120.00182 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00338 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99970 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00409 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47615 * 59.99700 * 19 17 15 21 21 H 1.48497 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47055 * 299.99677 * 19 17 15 23 23 C 1.53042 * 109.53804 * 298.63457 * 11 10 9 24 24 H 1.09002 * 109.49514 * 301.38163 * 23 11 10 25 25 C 1.52995 * 109.49639 * 181.31682 * 23 11 10 26 26 C 1.46924 * 120.62956 * 186.70907 * 8 6 5 27 27 O 1.34657 * 106.24349 * 359.97438 * 5 4 3 28 28 N 1.20881 * 111.63301 * 359.97438 * 27 5 4 29 29 H 1.09000 * 109.46606 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47061 * 299.99918 * 1 2 3 31 31 H 1.08999 * 109.47055 * 59.99972 * 1 2 3 32 32 H 1.07996 * 128.09145 * 359.75491 * 4 3 2 33 33 H 1.09004 * 109.58486 * 246.15935 * 9 8 6 34 34 H 1.09004 * 109.58624 * 6.57905 * 9 8 6 35 35 H 1.09001 * 109.49642 * 174.58466 * 10 9 8 36 36 H 1.08993 * 109.50194 * 294.64911 * 10 9 8 37 37 H 1.09001 * 109.47362 * 55.00129 * 13 11 10 38 38 H 1.08998 * 109.47449 * 175.00432 * 13 11 10 39 39 H 0.97004 * 119.99925 * 359.97438 * 14 13 11 40 40 H 0.96992 * 120.00552 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.47447 * 59.99759 * 25 23 11 42 42 H 1.08998 * 109.47054 * 180.02562 * 25 23 11 43 43 H 1.09006 * 109.46992 * 299.99953 * 25 23 11 44 44 H 1.09004 * 109.58797 * 353.41976 * 26 8 6 45 45 H 1.09003 * 109.58647 * 113.84123 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4506 -0.0005 5 6 3.5390 2.8138 0.0003 6 6 4.7784 3.6143 0.0008 7 8 5.8557 3.0668 -0.1322 8 7 4.7163 4.9526 0.1485 9 6 3.4417 5.6127 0.4621 10 6 3.6305 6.4821 1.7092 11 6 4.7982 7.4452 1.4827 12 1 4.5939 8.0645 0.6094 13 6 4.9678 8.3388 2.7130 14 7 3.7859 9.1912 2.8640 15 6 3.7114 10.0807 3.9025 16 1 4.5237 10.1536 4.6104 17 6 2.5913 10.8880 4.0459 18 7 1.6010 10.7989 3.1835 19 14 2.4900 12.1018 5.4621 20 1 3.6168 13.0647 5.3705 21 1 1.2028 12.8389 5.3913 22 1 2.5702 11.3674 6.7503 23 6 6.0830 6.6464 1.2517 24 1 6.2749 6.0086 2.1146 25 6 7.2555 7.6100 1.0581 26 6 5.9230 5.7783 0.0050 27 8 2.2758 3.2803 0.0006 28 7 1.4685 2.3805 -0.0004 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.2442 0.7262 0.0027 33 1 3.1381 6.2385 -0.3772 34 1 2.6776 4.8594 0.6541 35 1 2.7203 7.0516 1.8968 36 1 3.8446 5.8454 2.5675 37 1 5.0831 7.7169 3.6007 38 1 5.8525 8.9632 2.5893 39 1 3.0564 9.1260 2.2280 40 1 0.8185 11.3632 3.2835 41 1 7.3678 8.2291 1.9481 42 1 8.1702 7.0407 0.8932 43 1 7.0636 8.2469 0.1945 44 1 6.7956 5.1343 -0.1045 45 1 5.8260 6.4179 -0.8723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184220336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:52 Heat of formation + Delta-G solvation = -8.155946 kcal Electronic energy + Delta-G solvation = -27735.668437 eV Core-core repulsion = 23757.087175 eV Total energy + Delta-G solvation = -3978.581262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.18470 -41.43692 -39.96326 -39.34365 -36.65165 -35.17802 -34.38933 -33.57772 -32.83418 -32.04254 -28.73612 -28.40523 -27.99247 -25.79816 -24.71652 -24.53031 -23.44967 -22.67683 -21.80070 -20.80910 -19.36126 -19.11719 -19.02041 -18.13568 -17.50887 -17.05775 -16.76685 -16.66237 -16.26781 -15.97271 -15.71769 -15.51020 -15.26975 -15.15747 -14.91122 -14.52939 -14.24435 -14.02010 -13.75068 -13.20566 -13.11470 -12.95205 -12.93748 -12.85642 -12.75401 -12.63739 -12.57885 -12.21471 -11.95540 -11.86509 -11.65034 -11.61121 -11.25545 -11.15856 -11.06657 -10.85134 -10.48381 -9.80740 -8.93055 -7.91941 -5.19127 -0.44320 0.92104 1.32135 1.48732 1.50891 1.51949 1.57002 1.73993 2.09248 2.58364 2.90891 3.31585 3.41540 3.61257 3.71938 3.79953 3.86008 3.96469 3.99077 4.23554 4.25146 4.28905 4.31673 4.44774 4.54108 4.55933 4.62896 4.64831 4.71220 4.77236 4.82202 4.92169 5.01713 5.13360 5.15447 5.21958 5.27631 5.37865 5.48753 5.53170 5.62234 5.80564 6.04317 6.31049 6.63645 6.92632 7.37801 8.15362 8.38754 9.31204 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002951 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.661696 B = 9486.205113 C =11188.239445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.288 6.288 3 C 0.202 3.798 4 C -0.147 4.147 5 C -0.062 4.062 6 C 0.607 3.393 7 O -0.538 6.538 8 N -0.589 5.589 9 C 0.104 3.896 10 C -0.119 4.119 11 C -0.080 4.080 12 H 0.074 0.926 13 C 0.156 3.844 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.969 3.031 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.280 1.280 23 C -0.089 4.089 24 H 0.068 0.932 25 C -0.144 4.144 26 C 0.120 3.880 27 O 0.115 5.885 28 N -0.404 5.404 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.208 0.792 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.009 0.991 38 H 0.029 0.971 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -20.046 -10.086 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.005 3.995 4 C -0.170 4.170 5 C -0.128 4.128 6 C 0.393 3.607 7 O -0.416 6.416 8 N -0.319 5.319 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.099 4.099 12 H 0.093 0.907 13 C 0.030 3.970 14 N -0.385 5.385 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.207 1.207 23 C -0.109 4.109 24 H 0.086 0.914 25 C -0.201 4.201 26 C -0.001 4.001 27 O 0.052 5.948 28 N -0.131 5.131 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.047 0.953 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.600 -20.137 -10.013 22.776 hybrid contribution -0.403 0.518 0.815 1.047 sum 3.197 -19.619 -9.198 21.903 Atomic orbital electron populations 1.23386 0.74842 1.06344 1.02483 1.86225 1.24475 1.19671 1.89115 1.22055 0.90916 0.86079 1.00443 1.22437 0.94778 0.94821 1.04966 1.23941 0.86858 0.94047 1.07914 1.16605 0.85024 0.81687 0.77426 1.90844 1.27641 1.71083 1.52038 1.48108 1.11612 1.05020 1.67190 1.22215 0.84025 0.97236 0.98343 1.21815 0.99389 0.97374 0.97173 1.21257 0.94874 0.95717 0.98026 0.90746 1.20899 0.89409 0.91477 0.95239 1.42558 1.19686 1.44262 1.32012 1.19562 1.01450 1.12505 1.04077 0.91067 1.25485 0.96842 1.02577 1.01647 1.69781 1.08660 1.43978 1.39339 0.85283 0.76495 0.79034 0.79384 1.20488 1.22170 1.20681 1.21299 0.94927 0.96626 0.97998 0.91358 1.21797 0.97009 0.98872 1.02459 1.21834 0.86718 0.93224 0.98336 1.85105 1.11955 1.29028 1.68736 1.73992 1.16789 0.97284 1.25006 0.84391 0.92291 0.92016 0.77541 0.88801 0.88252 0.91336 0.92405 0.97269 0.95318 0.79165 0.94043 0.92615 0.90870 0.91799 0.88312 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.52 16 2 O -0.29 -5.50 10.57 -90.53 -0.96 -6.45 16 3 C 0.20 4.42 8.00 85.78 0.69 5.11 16 4 C -0.15 -3.01 10.98 22.80 0.25 -2.76 16 5 C -0.06 -1.40 6.89 24.36 0.17 -1.23 16 6 C 0.61 14.66 7.68 86.70 0.67 15.33 16 7 O -0.54 -15.11 16.34 -3.96 -0.06 -15.18 16 8 N -0.59 -13.16 2.98 -823.50 -2.45 -15.61 16 9 C 0.10 2.36 6.15 86.36 0.53 2.89 16 10 C -0.12 -3.39 5.25 30.67 0.16 -3.23 16 11 C -0.08 -2.30 1.73 -10.77 -0.02 -2.32 16 12 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 13 C 0.16 5.93 5.41 86.38 0.47 6.39 16 14 N -0.74 -36.50 5.32 -343.46 -1.83 -38.33 16 15 C -0.24 -13.47 9.99 84.04 0.84 -12.63 16 16 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 19 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 C -0.09 -2.02 2.40 -10.86 -0.03 -2.05 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 C -0.14 -2.93 8.82 71.98 0.63 -2.29 16 26 C 0.12 2.42 5.70 86.22 0.49 2.92 16 27 O 0.12 2.69 7.92 65.69 0.52 3.21 16 28 N -0.40 -9.68 11.50 -172.00 -1.98 -11.66 16 29 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 2.24 4.27 -12.55 -0.05 2.18 16 35 H 0.07 2.31 7.15 -2.39 -0.02 2.29 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.03 1.09 6.14 -2.39 -0.01 1.08 16 39 H 0.38 19.41 6.85 -92.71 -0.63 18.77 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.05 1.30 6.29 -2.39 -0.02 1.28 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.10 1.99 7.00 -2.39 -0.02 1.98 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.37 365.24 2.42 -64.95 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.34 Total: 25.18 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.53 Total: 3.96 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.97 Total: -123.52 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.50 Total: -18.42 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -67.37 2.42 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184220336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.790 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds