Wall clock time and date at job start Tue Mar 31 2020 14:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35732 * 116.99960 * 2 1 4 4 C 1.41857 * 126.78389 * 180.23537 * 3 2 1 5 5 C 1.36666 * 103.81013 * 180.12067 * 4 3 2 6 6 C 1.47535 * 126.87747 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00279 * 6.51362 * 6 5 4 8 8 N 1.34777 * 120.00027 * 186.51388 * 6 5 4 9 9 C 1.47211 * 120.81395 * 355.65751 * 8 6 5 10 10 C 1.53190 * 108.85593 * 126.33364 * 9 8 6 11 11 C 1.53042 * 109.30789 * 54.65288 * 10 9 8 12 12 H 1.09005 * 109.46003 * 58.65768 * 11 10 9 13 13 C 1.53002 * 109.45877 * 178.61224 * 11 10 9 14 14 N 1.46503 * 109.47154 * 295.07036 * 13 11 10 15 15 C 1.36934 * 119.99951 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99644 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99833 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47281 * 59.99798 * 19 17 15 21 21 H 1.48501 * 109.46972 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47024 * 299.99987 * 19 17 15 23 23 C 1.53039 * 109.54165 * 298.63525 * 11 10 9 24 24 H 1.08997 * 109.52325 * 181.33516 * 23 11 10 25 25 C 1.52999 * 109.49542 * 301.41230 * 23 11 10 26 26 C 1.46928 * 120.63563 * 175.51448 * 8 6 5 27 27 O 1.34662 * 106.23804 * 359.66616 * 5 4 3 28 28 N 1.20877 * 111.63384 * 0.22734 * 27 5 4 29 29 H 1.09003 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47569 * 299.99992 * 1 2 3 31 31 H 1.09002 * 109.46918 * 60.00384 * 1 2 3 32 32 H 1.07999 * 128.09211 * 0.02939 * 4 3 2 33 33 H 1.08998 * 109.53139 * 6.53309 * 9 8 6 34 34 H 1.08996 * 109.56205 * 246.15913 * 9 8 6 35 35 H 1.08994 * 109.49866 * 294.70885 * 10 9 8 36 36 H 1.09000 * 109.52332 * 174.61737 * 10 9 8 37 37 H 1.09001 * 109.46867 * 55.06992 * 13 11 10 38 38 H 1.09001 * 109.47475 * 175.07216 * 13 11 10 39 39 H 0.96998 * 120.00218 * 0.02562 * 14 13 11 40 40 H 0.97006 * 119.99462 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47375 * 179.83464 * 25 23 11 42 42 H 1.08997 * 109.47659 * 299.83787 * 25 23 11 43 43 H 1.09002 * 109.47293 * 59.83803 * 25 23 11 44 44 H 1.09001 * 109.58822 * 113.81699 * 26 8 6 45 45 H 1.09006 * 109.58253 * 353.54001 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0047 5 6 3.5391 2.8137 0.0003 6 6 4.7785 3.6141 -0.0010 7 8 5.8563 3.0655 -0.1264 8 7 4.7160 4.9533 0.1369 9 6 3.4182 5.6457 0.1947 10 6 3.3746 6.5112 1.4579 11 6 4.5858 7.4467 1.4724 12 1 4.5737 8.0703 0.5784 13 6 4.5274 8.3370 2.7153 14 7 3.3580 9.2156 2.6322 15 6 3.0979 10.1063 3.6392 16 1 3.7546 10.1608 4.4950 17 6 1.9896 10.9384 3.5608 18 7 1.1886 10.8709 2.5186 19 14 1.6352 12.1540 4.9342 20 1 2.7786 13.0913 5.0730 21 1 0.4036 12.9188 4.6127 22 1 1.4414 11.4176 6.2091 23 6 5.8723 6.6182 1.4986 24 1 6.7341 7.2846 1.5328 25 6 5.8741 5.7171 2.7351 26 6 5.9440 5.7539 0.2359 27 8 2.2758 3.2802 -0.0003 28 7 1.4686 2.3804 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.2441 0.7261 -0.0094 33 1 2.6141 4.9106 0.2276 34 1 3.3023 6.2779 -0.6856 35 1 3.3996 5.8703 2.3391 36 1 2.4586 7.1020 1.4634 37 1 4.4505 7.7130 3.6058 38 1 5.4327 8.9414 2.7722 39 1 2.7676 9.1659 1.8642 40 1 0.4143 11.4527 2.4636 41 1 6.7891 5.1250 2.7519 42 1 5.8231 6.3325 3.6333 43 1 5.0115 5.0516 2.7011 44 1 6.0341 6.3948 -0.6411 45 1 6.8080 5.0918 0.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184220337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:55 Heat of formation + Delta-G solvation = -2.423057 kcal Electronic energy + Delta-G solvation = -28026.549058 eV Core-core repulsion = 24048.216392 eV Total energy + Delta-G solvation = -3978.332665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.17699 -41.51139 -39.95899 -39.38252 -36.62644 -35.03771 -34.37381 -33.49889 -32.63520 -31.99290 -28.73067 -28.47139 -28.08228 -25.76426 -24.77710 -24.54661 -23.98547 -22.73700 -21.86802 -20.03935 -19.41773 -19.15592 -18.76065 -18.20800 -17.44022 -17.04136 -16.80732 -16.66190 -16.32995 -15.90616 -15.73603 -15.50144 -15.32490 -15.10144 -14.98235 -14.70008 -14.39868 -13.80516 -13.68576 -13.47541 -13.17145 -12.95535 -12.93376 -12.76205 -12.69589 -12.56404 -12.37592 -12.21416 -12.02242 -11.88155 -11.62696 -11.53776 -11.21476 -11.11881 -11.05055 -10.85059 -10.49363 -9.77433 -8.93045 -7.91792 -5.18838 -0.42525 0.93520 1.33038 1.48800 1.50957 1.52417 1.57054 1.77554 2.10057 2.58554 2.91501 3.29351 3.41814 3.62082 3.75837 3.82112 3.85351 3.97174 4.04187 4.23512 4.24853 4.28682 4.34718 4.46820 4.48597 4.55582 4.63080 4.69282 4.75397 4.77692 4.84523 4.95518 5.00034 5.11576 5.19306 5.20966 5.27977 5.31965 5.48426 5.54532 5.63203 5.81513 6.06608 6.31297 6.66524 6.95662 7.38079 8.16031 8.39116 9.31355 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003024 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.738623 B = 9256.142795 C =10701.025043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.289 6.289 3 C 0.203 3.797 4 C -0.148 4.148 5 C -0.062 4.062 6 C 0.607 3.393 7 O -0.538 6.538 8 N -0.584 5.584 9 C 0.101 3.899 10 C -0.120 4.120 11 C -0.080 4.080 12 H 0.074 0.926 13 C 0.158 3.842 14 N -0.743 5.743 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.969 3.031 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.280 1.280 23 C -0.090 4.090 24 H 0.101 0.899 25 C -0.144 4.144 26 C 0.119 3.881 27 O 0.113 5.887 28 N -0.406 5.406 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.207 0.793 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -20.781 -7.637 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.195 6.195 3 C 0.005 3.995 4 C -0.171 4.171 5 C -0.128 4.128 6 C 0.392 3.608 7 O -0.416 6.416 8 N -0.315 5.315 9 C -0.021 4.021 10 C -0.158 4.158 11 C -0.099 4.099 12 H 0.092 0.908 13 C 0.032 3.968 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.207 1.207 23 C -0.110 4.110 24 H 0.119 0.881 25 C -0.201 4.201 26 C -0.002 4.002 27 O 0.051 5.949 28 N -0.133 5.133 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.742 -20.871 -7.542 22.693 hybrid contribution -0.512 0.583 0.623 0.995 sum 4.230 -20.288 -6.919 21.849 Atomic orbital electron populations 1.23381 0.74882 1.06326 1.02455 1.86221 1.24439 1.19703 1.89132 1.22053 0.90930 0.86053 1.00443 1.22430 0.94739 0.94823 1.05072 1.24016 0.86869 0.94119 1.07771 1.16580 0.84979 0.81695 0.77503 1.90846 1.27634 1.71230 1.51889 1.48136 1.09411 1.04919 1.69052 1.22361 0.83693 0.96792 0.99277 1.21830 0.98869 0.97576 0.97516 1.21222 0.94868 0.95624 0.98147 0.90804 1.20855 0.88932 0.90935 0.96087 1.42567 1.29171 1.43085 1.23743 1.19565 1.06678 1.11811 0.99536 0.91067 1.25483 0.98232 1.02487 1.00360 1.69787 1.17336 1.43158 1.31471 0.85287 0.76863 0.79022 0.79045 1.20510 1.22188 1.20661 1.21438 0.97965 0.96673 0.94885 0.88134 1.21849 1.01566 0.99256 0.97478 1.21906 0.85994 0.93961 0.98353 1.85084 1.12063 1.28754 1.68995 1.73988 1.17046 0.97337 1.24956 0.84384 0.92327 0.92058 0.77552 0.87987 0.88757 0.91926 0.91626 0.96372 0.96403 0.79161 0.94063 0.91828 0.92772 0.93636 0.88917 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.73 113.37 1.22 1.53 16 2 O -0.29 -5.57 10.57 -90.55 -0.96 -6.53 16 3 C 0.20 4.48 8.00 85.78 0.69 5.17 16 4 C -0.15 -3.04 10.98 22.80 0.25 -2.79 16 5 C -0.06 -1.41 6.98 24.36 0.17 -1.24 16 6 C 0.61 14.43 7.70 86.70 0.67 15.10 16 7 O -0.54 -14.82 16.35 -3.98 -0.07 -14.88 16 8 N -0.58 -12.72 2.43 -821.95 -1.99 -14.72 16 9 C 0.10 2.25 6.34 86.31 0.55 2.80 16 10 C -0.12 -3.34 4.91 30.67 0.15 -3.19 16 11 C -0.08 -2.25 1.96 -10.77 -0.02 -2.27 16 12 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 13 C 0.16 5.94 5.19 86.38 0.45 6.39 16 14 N -0.74 -36.39 5.32 -343.43 -1.83 -38.22 16 15 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 16 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 19 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 C -0.09 -1.97 2.72 -10.72 -0.03 -2.00 16 24 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 25 C -0.14 -3.31 8.38 71.98 0.60 -2.70 16 26 C 0.12 2.32 5.80 86.36 0.50 2.83 16 27 O 0.11 2.68 7.75 65.63 0.51 3.19 16 28 N -0.41 -9.89 11.50 -172.03 -1.98 -11.87 16 29 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.10 2.30 3.85 -43.83 -0.17 2.13 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.82 6.33 -2.39 -0.02 1.80 16 36 H 0.07 2.20 7.15 -2.39 -0.02 2.19 16 37 H 0.02 0.71 6.74 -2.39 -0.02 0.69 16 38 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.38 19.35 6.84 -92.71 -0.63 18.72 16 40 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.34 6.59 -2.39 -0.02 1.33 16 43 H 0.04 1.12 5.97 -2.39 -0.01 1.11 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.93 7.03 -2.38 -0.02 1.91 16 Total: -1.00 -67.30 360.99 2.72 -64.58 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.23 Total: 25.19 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.50 Total: 3.32 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -5.52 Total: -122.71 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.51 Total: -18.22 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -67.30 2.72 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184220337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.157 kcal (2) G-P(sol) polarization free energy of solvation -67.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds