Wall clock time and date at job start Tue Mar 31 2020 14:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35727 * 117.00090 * 2 1 4 4 C 1.41856 * 126.78890 * 180.24048 * 3 2 1 5 5 C 1.36658 * 103.81462 * 180.11849 * 4 3 2 6 6 C 1.47539 * 126.88066 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00123 * 352.77889 * 6 5 4 8 8 N 1.34776 * 120.00109 * 172.77098 * 6 5 4 9 9 C 1.46931 * 120.62990 * 353.04602 * 8 6 5 10 10 C 1.53192 * 108.77451 * 233.58241 * 9 8 6 11 11 C 1.53043 * 109.31537 * 305.36736 * 10 9 8 12 12 H 1.09002 * 109.45738 * 301.34425 * 11 10 9 13 13 C 1.53000 * 109.46292 * 181.36980 * 11 10 9 14 14 N 1.46500 * 109.46964 * 64.97111 * 13 11 10 15 15 C 1.36940 * 119.99838 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99640 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99622 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00586 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46921 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47454 * 119.99570 * 19 17 15 22 22 H 1.48500 * 109.47243 * 239.99768 * 19 17 15 23 23 C 1.53042 * 109.53726 * 61.36179 * 11 10 9 24 24 H 1.08995 * 109.49882 * 58.59114 * 23 11 10 25 25 C 1.53000 * 109.49598 * 178.68652 * 23 11 10 26 26 C 1.46928 * 120.63013 * 173.01609 * 8 6 5 27 27 O 1.34664 * 106.24273 * 359.66631 * 5 4 3 28 28 N 1.20881 * 111.63144 * 0.22494 * 27 5 4 29 29 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47114 * 300.00012 * 1 2 3 31 31 H 1.09008 * 109.47326 * 59.99650 * 1 2 3 32 32 H 1.07997 * 128.08870 * 0.02810 * 4 3 2 33 33 H 1.09002 * 109.58743 * 113.79791 * 9 8 6 34 34 H 1.08997 * 109.58507 * 353.36790 * 9 8 6 35 35 H 1.08991 * 109.50185 * 185.41068 * 10 9 8 36 36 H 1.09010 * 109.52433 * 65.32696 * 10 9 8 37 37 H 1.09001 * 109.46775 * 184.97024 * 13 11 10 38 38 H 1.09004 * 109.46674 * 304.97068 * 13 11 10 39 39 H 0.97004 * 119.99945 * 359.97438 * 14 13 11 40 40 H 0.96994 * 120.00140 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47475 * 60.00349 * 25 23 11 42 42 H 1.09002 * 109.47024 * 179.97438 * 25 23 11 43 43 H 1.08996 * 109.47555 * 299.99840 * 25 23 11 44 44 H 1.08997 * 109.59009 * 246.20039 * 26 8 6 45 45 H 1.08993 * 109.58949 * 6.63376 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0048 5 6 3.5391 2.8137 0.0002 6 6 4.7785 3.6141 -0.0012 7 8 5.8563 3.0659 0.1251 8 7 4.7159 4.9529 -0.1426 9 6 3.4400 5.6147 -0.4477 10 6 3.6239 6.4907 -1.6910 11 6 4.7924 7.4526 -1.4641 12 1 4.5914 8.0675 -0.5868 13 6 4.9574 8.3525 -2.6904 14 7 3.7747 9.2051 -2.8331 15 6 3.6958 10.0990 -3.8675 16 1 4.5058 10.1757 -4.5778 17 6 2.5754 10.9072 -4.0023 18 7 1.5886 10.8141 -3.1364 19 14 2.4681 12.1272 -5.4129 20 1 3.6985 12.0374 -6.2396 21 1 1.2838 11.8116 -6.2514 22 1 2.3371 13.5027 -4.8689 23 6 6.0782 6.6527 -1.2423 24 1 6.2665 6.0191 -2.1089 25 6 7.2514 7.6154 -1.0481 26 6 5.9221 5.7786 0.0061 27 8 2.2758 3.2802 -0.0003 28 7 1.4685 2.3805 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.2441 0.7261 -0.0096 33 1 3.1397 6.2361 0.3959 34 1 2.6753 4.8624 -0.6407 35 1 2.7130 7.0611 -1.8721 36 1 3.8352 5.8589 -2.5538 37 1 5.8425 8.9766 -2.5666 38 1 5.0699 7.7350 -3.5816 39 1 3.0471 9.1359 -2.1953 40 1 0.8055 11.3786 -3.2309 41 1 7.0629 8.2477 -0.1805 42 1 8.1668 7.0453 -0.8897 43 1 7.3603 8.2391 -1.9354 44 1 5.8242 6.4134 0.8867 45 1 6.7950 5.1346 0.1126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184220339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:58 Heat of formation + Delta-G solvation = 13.825392 kcal Electronic energy + Delta-G solvation = -27734.310143 eV Core-core repulsion = 23756.682064 eV Total energy + Delta-G solvation = -3977.628080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.29090 -40.40101 -39.20440 -38.19327 -35.18265 -33.77720 -33.51513 -32.21367 -31.83004 -30.35713 -28.04076 -27.10423 -26.95212 -24.32425 -23.74843 -23.18707 -22.38362 -21.40836 -20.81042 -19.67965 -18.36106 -18.18680 -17.31255 -17.10192 -16.46689 -16.16019 -15.92764 -15.39281 -15.16796 -14.81490 -14.51582 -14.25827 -14.05621 -13.78304 -13.58935 -13.40019 -12.96567 -12.63032 -12.58488 -12.42709 -12.23387 -11.97705 -11.86108 -11.71852 -11.61858 -11.01215 -10.91904 -10.84188 -10.57042 -10.41567 -10.21223 -10.17250 -10.14897 -9.93702 -9.64743 -9.64064 -8.87895 -8.77587 -6.90455 -5.76989 -3.04886 0.47251 1.79597 2.24938 2.30532 2.70042 3.00341 3.42965 3.48979 3.50889 3.75773 4.22675 4.47432 4.58084 4.70622 4.78675 4.81291 4.87581 4.89658 4.93583 5.08811 5.10980 5.28145 5.32550 5.43851 5.54237 5.57658 5.64337 5.73334 5.81546 5.88500 5.96412 6.04852 6.16060 6.26397 6.30274 6.37804 6.47320 6.56667 6.60074 6.81932 6.91760 7.03846 7.60191 7.70781 7.83865 8.42427 9.53703 10.11947 10.46337 11.45998 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.002951 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.910103 B = 9485.026741 C =11187.909684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.205 3.795 4 C -0.154 4.154 5 C -0.054 4.054 6 C 0.603 3.397 7 O -0.517 6.517 8 N -0.591 5.591 9 C 0.094 3.906 10 C -0.125 4.125 11 C -0.090 4.090 12 H 0.074 0.926 13 C 0.156 3.844 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.098 4.098 24 H 0.075 0.925 25 C -0.147 4.147 26 C 0.118 3.882 27 O 0.120 5.880 28 N -0.391 5.391 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.190 0.810 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -19.202 9.545 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.007 3.993 4 C -0.177 4.177 5 C -0.119 4.119 6 C 0.388 3.612 7 O -0.394 6.394 8 N -0.322 5.322 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.109 4.109 12 H 0.093 0.907 13 C 0.029 3.971 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.118 4.118 24 H 0.093 0.907 25 C -0.205 4.205 26 C -0.004 4.004 27 O 0.056 5.944 28 N -0.116 5.116 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.207 0.793 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.887 -19.286 9.465 21.676 hybrid contribution -0.191 0.315 -0.641 0.740 sum 2.696 -18.971 8.823 21.095 Atomic orbital electron populations 1.23120 0.76429 1.04298 1.02643 1.86212 1.22879 1.20373 1.89355 1.21871 0.90563 0.85858 1.00959 1.22158 0.94484 0.94846 1.06242 1.24033 0.87108 0.93747 1.07042 1.16584 0.85088 0.81663 0.77884 1.90858 1.26825 1.70746 1.50923 1.48087 1.11398 1.04993 1.67733 1.22327 0.83827 0.97364 0.99276 1.21940 1.00728 0.97493 0.96113 1.21371 0.93182 0.96072 1.00295 0.90738 1.20754 0.91234 0.91565 0.93544 1.42388 1.18440 1.43733 1.33084 1.19263 1.01718 1.12121 1.03685 0.91244 1.24719 0.96891 1.00393 0.99037 1.69658 1.08337 1.42832 1.37416 0.86142 0.77303 0.81120 0.81786 1.20614 1.21916 1.21912 1.21476 0.96037 0.96724 0.97514 0.90656 1.21831 0.96660 0.99063 1.02907 1.21871 0.86834 0.93249 0.98413 1.85136 1.11921 1.28957 1.68398 1.74014 1.16479 0.96818 1.24284 0.87469 0.92051 0.91960 0.79294 0.90165 0.88628 0.88854 0.91658 0.95730 0.96553 0.78288 0.93603 0.92408 0.92904 0.91186 0.90659 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.88 10.57 -18.89 -0.20 -3.08 16 3 C 0.20 2.35 8.00 -16.72 -0.13 2.22 16 4 C -0.15 -1.68 10.98 -38.77 -0.43 -2.11 16 5 C -0.05 -0.63 6.90 -36.36 -0.25 -0.88 16 6 C 0.60 7.69 7.68 -12.47 -0.10 7.59 16 7 O -0.52 -7.64 16.34 5.29 0.09 -7.56 16 8 N -0.59 -7.04 2.97 -173.99 -0.52 -7.56 16 9 C 0.09 1.11 6.15 -3.71 -0.02 1.09 16 10 C -0.12 -1.77 5.25 -26.61 -0.14 -1.91 16 11 C -0.09 -1.32 1.73 -90.58 -0.16 -1.48 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.16 2.97 5.41 -4.04 -0.02 2.95 16 14 N -0.73 -17.77 5.32 -59.91 -0.32 -18.09 16 15 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 19 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 C -0.10 -1.19 2.41 -90.50 -0.22 -1.40 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 26 C 0.12 1.31 5.73 -3.71 -0.02 1.29 16 27 O 0.12 1.44 7.91 15.49 0.12 1.57 16 28 N -0.39 -4.83 11.50 30.47 0.35 -4.47 16 29 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.11 4.26 -52.63 -0.22 0.88 16 35 H 0.09 1.53 7.15 -51.93 -0.37 1.16 16 36 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 37 H 0.03 0.47 6.14 -51.93 -0.32 0.16 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.86 6.29 -51.93 -0.33 0.53 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -31.76 365.25 -6.09 -37.85 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.50 Total: 5.43 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.32 Total: 0.19 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.24 Total: -57.09 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.01 Total: -9.07 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.76 -6.09 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184220339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.679 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds