Wall clock time and date at job start Tue Mar 31 2020 14:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35727 * 117.00090 * 2 1 4 4 C 1.41856 * 126.78890 * 180.24048 * 3 2 1 5 5 C 1.36658 * 103.81462 * 180.11849 * 4 3 2 6 6 C 1.47539 * 126.88066 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00123 * 352.77889 * 6 5 4 8 8 N 1.34776 * 120.00109 * 172.77098 * 6 5 4 9 9 C 1.46931 * 120.62990 * 353.04602 * 8 6 5 10 10 C 1.53192 * 108.77451 * 233.58241 * 9 8 6 11 11 C 1.53043 * 109.31537 * 305.36736 * 10 9 8 12 12 H 1.09002 * 109.45738 * 301.34425 * 11 10 9 13 13 C 1.53000 * 109.46292 * 181.36980 * 11 10 9 14 14 N 1.46500 * 109.46964 * 64.97111 * 13 11 10 15 15 C 1.36940 * 119.99838 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99640 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99622 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00586 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99858 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46921 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47454 * 119.99570 * 19 17 15 22 22 H 1.48500 * 109.47243 * 239.99768 * 19 17 15 23 23 C 1.53042 * 109.53726 * 61.36179 * 11 10 9 24 24 H 1.08995 * 109.49882 * 58.59114 * 23 11 10 25 25 C 1.53000 * 109.49598 * 178.68652 * 23 11 10 26 26 C 1.46928 * 120.63013 * 173.01609 * 8 6 5 27 27 O 1.34664 * 106.24273 * 359.66631 * 5 4 3 28 28 N 1.20881 * 111.63144 * 0.22494 * 27 5 4 29 29 H 1.08999 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47114 * 300.00012 * 1 2 3 31 31 H 1.09008 * 109.47326 * 59.99650 * 1 2 3 32 32 H 1.07997 * 128.08870 * 0.02810 * 4 3 2 33 33 H 1.09002 * 109.58743 * 113.79791 * 9 8 6 34 34 H 1.08997 * 109.58507 * 353.36790 * 9 8 6 35 35 H 1.08991 * 109.50185 * 185.41068 * 10 9 8 36 36 H 1.09010 * 109.52433 * 65.32696 * 10 9 8 37 37 H 1.09001 * 109.46775 * 184.97024 * 13 11 10 38 38 H 1.09004 * 109.46674 * 304.97068 * 13 11 10 39 39 H 0.97004 * 119.99945 * 359.97438 * 14 13 11 40 40 H 0.96994 * 120.00140 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47475 * 60.00349 * 25 23 11 42 42 H 1.09002 * 109.47024 * 179.97438 * 25 23 11 43 43 H 1.08996 * 109.47555 * 299.99840 * 25 23 11 44 44 H 1.08997 * 109.59009 * 246.20039 * 26 8 6 45 45 H 1.08993 * 109.58949 * 6.63376 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0048 5 6 3.5391 2.8137 0.0002 6 6 4.7785 3.6141 -0.0012 7 8 5.8563 3.0659 0.1251 8 7 4.7159 4.9529 -0.1426 9 6 3.4400 5.6147 -0.4477 10 6 3.6239 6.4907 -1.6910 11 6 4.7924 7.4526 -1.4641 12 1 4.5914 8.0675 -0.5868 13 6 4.9574 8.3525 -2.6904 14 7 3.7747 9.2051 -2.8331 15 6 3.6958 10.0990 -3.8675 16 1 4.5058 10.1757 -4.5778 17 6 2.5754 10.9072 -4.0023 18 7 1.5886 10.8141 -3.1364 19 14 2.4681 12.1272 -5.4129 20 1 3.6985 12.0374 -6.2396 21 1 1.2838 11.8116 -6.2514 22 1 2.3371 13.5027 -4.8689 23 6 6.0782 6.6527 -1.2423 24 1 6.2665 6.0191 -2.1089 25 6 7.2514 7.6154 -1.0481 26 6 5.9221 5.7786 0.0061 27 8 2.2758 3.2802 -0.0003 28 7 1.4685 2.3805 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.2441 0.7261 -0.0096 33 1 3.1397 6.2361 0.3959 34 1 2.6753 4.8624 -0.6407 35 1 2.7130 7.0611 -1.8721 36 1 3.8352 5.8589 -2.5538 37 1 5.8425 8.9766 -2.5666 38 1 5.0699 7.7350 -3.5816 39 1 3.0471 9.1359 -2.1953 40 1 0.8055 11.3786 -3.2309 41 1 7.0629 8.2477 -0.1805 42 1 8.1668 7.0453 -0.8897 43 1 7.3603 8.2391 -1.9354 44 1 5.8242 6.4134 0.8867 45 1 6.7950 5.1346 0.1126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184220339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:58 Heat of formation + Delta-G solvation = -8.242678 kcal Electronic energy + Delta-G solvation = -27735.267087 eV Core-core repulsion = 23756.682064 eV Total energy + Delta-G solvation = -3978.585023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.18410 -41.42806 -39.96365 -39.33536 -36.65310 -35.17234 -34.38960 -33.56892 -32.83030 -32.04212 -28.73506 -28.40373 -27.98830 -25.80218 -24.71396 -24.53100 -23.44664 -22.68114 -21.79809 -20.80972 -19.35931 -19.11677 -19.02246 -18.13711 -17.50641 -17.05653 -16.77011 -16.66240 -16.26799 -15.97068 -15.71553 -15.50594 -15.27033 -15.16007 -14.91232 -14.52674 -14.24346 -14.01905 -13.75227 -13.20574 -13.12058 -12.95204 -12.93601 -12.86062 -12.78334 -12.65767 -12.57788 -12.12721 -11.95034 -11.87359 -11.64881 -11.60864 -11.25800 -11.16030 -11.06693 -10.86885 -10.48381 -9.80475 -8.93062 -7.92382 -5.19480 -0.44359 0.92096 1.32247 1.48643 1.48905 1.52085 1.58704 1.74093 2.09131 2.57974 2.90889 3.31482 3.41479 3.61284 3.72157 3.79796 3.85986 3.96461 3.98987 4.23492 4.25149 4.28898 4.31703 4.44862 4.53926 4.55899 4.62876 4.64955 4.71253 4.77169 4.82240 4.92276 5.01766 5.13330 5.15519 5.21923 5.27756 5.37965 5.48894 5.53521 5.62370 5.80609 6.04359 6.30975 6.63687 6.92688 7.37660 8.15030 8.38376 9.31128 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.002951 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.910103 B = 9485.026741 C =11187.909684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.288 6.288 3 C 0.202 3.798 4 C -0.147 4.147 5 C -0.062 4.062 6 C 0.607 3.393 7 O -0.538 6.538 8 N -0.589 5.589 9 C 0.104 3.896 10 C -0.119 4.119 11 C -0.080 4.080 12 H 0.074 0.926 13 C 0.156 3.844 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.269 1.269 21 H -0.295 1.295 22 H -0.293 1.293 23 C -0.088 4.088 24 H 0.068 0.932 25 C -0.144 4.144 26 C 0.120 3.880 27 O 0.115 5.885 28 N -0.404 5.404 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.208 0.792 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.010 0.990 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 -20.146 9.987 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.005 3.995 4 C -0.170 4.170 5 C -0.128 4.128 6 C 0.393 3.607 7 O -0.416 6.416 8 N -0.319 5.319 9 C -0.018 4.018 10 C -0.157 4.157 11 C -0.099 4.099 12 H 0.093 0.907 13 C 0.030 3.970 14 N -0.385 5.385 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.193 1.193 21 H -0.222 1.222 22 H -0.221 1.221 23 C -0.108 4.108 24 H 0.087 0.913 25 C -0.202 4.202 26 C -0.001 4.001 27 O 0.052 5.948 28 N -0.131 5.131 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.225 0.775 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.736 -20.243 9.901 22.842 hybrid contribution -0.438 0.531 -0.792 1.049 sum 3.298 -19.712 9.109 21.964 Atomic orbital electron populations 1.23388 0.74844 1.06344 1.02483 1.86223 1.24472 1.19677 1.89113 1.22055 0.90916 0.86076 1.00444 1.22435 0.94778 0.94827 1.04958 1.23942 0.86859 0.94045 1.07916 1.16606 0.85029 0.81707 0.77407 1.90846 1.27606 1.71097 1.52065 1.48112 1.11591 1.04942 1.67303 1.22218 0.83993 0.97174 0.98436 1.21816 0.99381 0.97343 0.97204 1.21258 0.94875 0.95685 0.98063 0.90745 1.20904 0.89392 0.91462 0.95282 1.42577 1.19777 1.43962 1.32218 1.19627 1.01472 1.12089 1.04090 0.91044 1.25481 0.96922 1.02598 1.01634 1.69799 1.08823 1.43931 1.39211 0.85148 0.77390 0.78631 0.79053 1.19303 1.22190 1.22054 1.21378 0.94889 0.96578 0.97971 0.91335 1.21800 0.97019 0.98886 1.02454 1.21930 0.86715 0.93170 0.98302 1.85107 1.11958 1.29017 1.68746 1.73994 1.16796 0.97287 1.25000 0.84390 0.92017 0.92294 0.77542 0.88808 0.88243 0.91341 0.92400 0.95296 0.97251 0.79161 0.94071 0.91798 0.90883 0.92623 0.88883 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.52 16 2 O -0.29 -5.49 10.57 -90.50 -0.96 -6.45 16 3 C 0.20 4.42 8.00 85.78 0.69 5.11 16 4 C -0.15 -3.01 10.98 22.80 0.25 -2.76 16 5 C -0.06 -1.40 6.90 24.36 0.17 -1.23 16 6 C 0.61 14.64 7.68 86.70 0.67 15.31 16 7 O -0.54 -15.10 16.34 -3.98 -0.07 -15.17 16 8 N -0.59 -13.14 2.97 -822.64 -2.45 -15.58 16 9 C 0.10 2.35 6.15 86.36 0.53 2.88 16 10 C -0.12 -3.38 5.25 30.67 0.16 -3.22 16 11 C -0.08 -2.30 1.73 -10.77 -0.02 -2.31 16 12 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 13 C 0.16 5.91 5.41 86.38 0.47 6.37 16 14 N -0.74 -36.44 5.32 -343.45 -1.83 -38.27 16 15 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 18 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 19 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 C -0.09 -2.01 2.41 -10.71 -0.03 -2.04 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 C -0.14 -2.93 8.82 71.98 0.63 -2.29 16 26 C 0.12 2.42 5.73 86.36 0.49 2.91 16 27 O 0.12 2.68 7.91 65.62 0.52 3.20 16 28 N -0.40 -9.68 11.50 -172.00 -1.98 -11.66 16 29 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 2.24 4.26 -13.46 -0.06 2.18 16 35 H 0.07 2.31 7.15 -2.39 -0.02 2.29 16 36 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.03 1.10 6.14 -2.39 -0.01 1.08 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.38 19.38 6.85 -92.71 -0.63 18.74 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.30 6.29 -2.39 -0.02 1.28 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.10 1.99 7.00 -2.39 -0.02 1.97 16 Total: -1.00 -67.41 365.25 2.43 -64.98 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.33 Total: 24.84 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.54 Total: 4.09 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.97 Total: -123.39 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.50 Total: -18.41 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -67.41 2.43 -64.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184220339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.734 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds