Wall clock time and date at job start Tue Mar 31 2020 14:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50148 * 2 1 4 4 C 1.53625 * 109.63608 * 239.90233 * 2 1 3 5 5 N 1.46931 * 108.53909 * 294.86559 * 4 2 1 6 6 C 1.34779 * 120.62895 * 126.36957 * 5 4 2 7 7 O 1.21504 * 119.99889 * 4.36116 * 6 5 4 8 8 C 1.48202 * 119.99994 * 184.08730 * 6 5 4 9 9 C 1.36318 * 126.38241 * 173.94509 * 8 6 5 10 10 C 1.42349 * 104.00803 * 179.97438 * 9 8 6 11 11 O 1.21975 * 127.15099 * 179.97438 * 10 9 8 12 12 N 1.34833 * 105.69780 * 359.97438 * 10 9 8 13 13 C 1.46499 * 124.56260 * 180.02562 * 12 10 9 14 14 O 1.20921 * 110.86885 * 359.74687 * 12 10 9 15 15 C 1.46923 * 118.74085 * 306.08976 * 5 4 2 16 16 C 1.53191 * 108.77244 * 53.86527 * 15 5 4 17 17 C 1.53037 * 109.49820 * 120.06681 * 2 1 3 18 18 H 1.09003 * 109.45101 * 178.59872 * 17 2 1 19 19 C 1.53002 * 109.45839 * 298.56830 * 17 2 1 20 20 N 1.46509 * 109.46975 * 185.06668 * 19 17 2 21 21 C 1.36932 * 119.99766 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00700 * 0.02562 * 21 20 19 23 23 C 1.38819 * 119.99893 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99890 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99868 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47174 * 90.00861 * 25 23 21 27 27 H 1.48500 * 109.46849 * 210.00316 * 25 23 21 28 28 H 1.48496 * 109.47532 * 330.00237 * 25 23 21 29 29 H 1.09002 * 109.47079 * 299.93572 * 1 2 3 30 30 H 1.09002 * 109.46595 * 59.93078 * 1 2 3 31 31 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.73950 * 175.13232 * 4 2 1 33 33 H 1.09000 * 109.66664 * 54.55472 * 4 2 1 34 34 H 1.08000 * 128.00167 * 359.97438 * 9 8 6 35 35 H 1.09004 * 109.47334 * 90.00039 * 13 12 10 36 36 H 1.09004 * 109.47319 * 209.99999 * 13 12 10 37 37 H 1.09002 * 109.47583 * 330.00236 * 13 12 10 38 38 H 1.09004 * 109.58510 * 173.64584 * 15 5 4 39 39 H 1.08995 * 109.58952 * 294.07834 * 15 5 4 40 40 H 1.09000 * 109.49826 * 65.31545 * 16 15 5 41 41 H 1.09003 * 109.49750 * 185.38144 * 16 15 5 42 42 H 1.08998 * 109.47118 * 305.06210 * 19 17 2 43 43 H 1.08999 * 109.47331 * 65.06823 * 19 17 2 44 44 H 0.97001 * 119.99841 * 359.97438 * 20 19 17 45 45 H 0.96999 * 120.00287 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0463 -0.7256 -1.2518 5 7 1.6515 -2.1385 -1.1690 6 6 0.9748 -2.7226 -2.1776 7 8 0.7546 -2.1040 -3.1999 8 6 0.5045 -4.1215 -2.0420 9 6 -0.2846 -4.7983 -2.9238 10 6 -0.4388 -6.0837 -2.3318 11 8 -1.0727 -7.0272 -2.7743 12 7 0.2615 -6.0414 -1.1804 13 6 0.3817 -7.1578 -0.2394 14 8 0.7814 -4.9599 -1.0318 15 6 2.0140 -2.9040 0.0315 16 6 1.5030 -2.1555 1.2665 17 6 2.0408 -0.7228 1.2485 18 1 3.1305 -0.7441 1.2352 19 6 1.5606 0.0177 2.4984 20 7 2.1480 -0.6020 3.6889 21 6 1.8600 -0.1053 4.9320 22 1 1.1996 0.7431 5.0350 23 6 2.4161 -0.6927 6.0602 24 7 3.2205 -1.7269 5.9348 25 14 2.0227 -0.0155 7.7560 26 1 0.8212 -0.7008 8.2962 27 1 3.1756 -0.2500 8.6622 28 1 1.7589 1.4425 7.6579 29 1 -0.3633 0.5128 0.8906 30 1 -0.3632 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1328 -0.6519 -1.2983 33 1 1.6089 -0.2757 -2.1431 34 1 -0.6974 -4.4419 -3.8560 35 1 1.2487 -7.7636 -0.5030 36 1 0.5040 -6.7692 0.7717 37 1 -0.5180 -7.7713 -0.2865 38 1 1.5553 -3.8919 -0.0128 39 1 3.0979 -3.0043 0.0876 40 1 0.4132 -2.1352 1.2546 41 1 1.8475 -2.6626 2.1678 42 1 1.8685 1.0618 2.4429 43 1 0.4737 -0.0380 2.5585 44 1 2.7408 -1.3642 3.5965 45 1 3.6094 -2.1372 6.7231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184249560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:01 Heat of formation + Delta-G solvation = 34.525596 kcal Electronic energy + Delta-G solvation = -28378.112698 eV Core-core repulsion = 24401.382246 eV Total energy + Delta-G solvation = -3976.730451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.37100 -40.65972 -38.43052 -38.35357 -35.24136 -34.61831 -33.47948 -32.51294 -31.91712 -30.46630 -28.70153 -27.16263 -26.81540 -24.28953 -23.88803 -23.20861 -23.01120 -21.40632 -20.54419 -18.88357 -18.66041 -18.21329 -17.60613 -17.06758 -16.46353 -15.72007 -15.54234 -15.23886 -15.01962 -14.49561 -14.30471 -14.22417 -14.10197 -13.94509 -13.89506 -13.62815 -13.51801 -13.16148 -13.02360 -12.63859 -12.47846 -12.29533 -11.73858 -11.48889 -11.15018 -11.02593 -10.87835 -10.78928 -10.48562 -10.40318 -10.32468 -10.26821 -10.14130 -10.01993 -9.71536 -8.93283 -8.91810 -8.77246 -6.97593 -5.83243 -3.11247 0.26994 1.28234 2.30311 2.40766 2.72154 3.02342 3.38972 3.44856 3.45939 3.99124 4.40055 4.52512 4.65176 4.73122 4.77637 4.80247 4.83478 4.85756 4.95936 5.09451 5.11946 5.27058 5.40482 5.49607 5.52048 5.53603 5.60917 5.66275 5.68484 5.83312 5.94079 5.98971 6.03195 6.17712 6.24687 6.29246 6.35077 6.52719 6.71454 6.84169 6.88993 7.32401 7.54530 7.64690 7.76708 8.36193 9.47621 10.05039 10.39482 11.39689 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.003236 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.299444 B = 8649.448439 C =10055.568962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.599 3.401 7 O -0.505 6.505 8 C 0.033 3.967 9 C -0.238 4.238 10 C 0.481 3.519 11 O -0.526 6.526 12 N -0.456 5.456 13 C 0.104 3.896 14 O 0.001 5.999 15 C 0.094 3.906 16 C -0.127 4.127 17 C -0.090 4.090 18 H 0.074 0.926 19 C 0.158 3.842 20 N -0.732 5.732 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.192 0.808 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -5.211 -15.649 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.105 0.895 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.383 3.617 7 O -0.381 6.381 8 C -0.025 4.025 9 C -0.263 4.263 10 C 0.279 3.721 11 O -0.407 6.407 12 N -0.221 5.221 13 C -0.033 4.033 14 O -0.007 6.007 15 C -0.028 4.028 16 C -0.165 4.165 17 C -0.109 4.109 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.964 -5.389 -15.956 17.101 hybrid contribution 0.064 0.064 1.118 1.122 sum -2.900 -5.325 -14.838 16.029 Atomic orbital electron populations 1.21886 0.94761 1.01964 1.01855 1.21578 0.96743 0.99701 0.93835 0.89474 1.21979 1.00109 0.78551 0.99793 1.48112 1.53488 1.12535 1.17758 1.16884 0.78876 0.81935 0.84045 1.90866 1.57395 1.61550 1.28268 1.23450 0.98992 0.91950 0.88061 1.23306 1.05068 0.94382 1.03539 1.18325 0.82404 0.90294 0.81031 1.90964 1.44037 1.39610 1.66079 1.46296 1.46754 1.04725 1.24353 1.22186 1.05025 0.84248 0.91830 1.84298 1.61467 1.13247 1.41702 1.22421 1.01290 0.94971 0.84074 1.21985 1.01541 0.96071 0.96875 1.21339 1.00440 0.94473 0.94640 0.90768 1.20711 0.95951 0.94705 0.85551 1.42373 1.56816 1.37597 1.00859 1.19223 1.23055 1.10888 0.83821 0.91274 1.24714 1.00027 0.98368 0.97808 1.69642 1.35645 1.24438 1.28588 0.86207 0.77271 0.78311 0.84514 1.21746 1.21772 1.20781 0.91642 0.93077 0.92746 0.90504 0.88616 0.79093 0.90027 0.88450 0.87685 0.88555 0.90036 0.91182 0.89016 0.96359 0.96036 0.78328 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.39 37.16 0.31 -1.37 16 2 C -0.10 -1.09 2.72 -90.28 -0.25 -1.34 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 4 C 0.12 1.18 5.86 -3.48 -0.02 1.16 16 5 N -0.59 -6.27 2.40 -173.48 -0.42 -6.68 16 6 C 0.60 7.05 7.71 -12.17 -0.09 6.96 16 7 O -0.50 -7.04 16.33 5.36 0.09 -6.96 16 8 C 0.03 0.37 6.96 -36.18 -0.25 0.11 16 9 C -0.24 -2.72 10.94 -38.69 -0.42 -3.15 16 10 C 0.48 6.15 8.02 -14.65 -0.12 6.03 16 11 O -0.53 -8.31 17.84 4.94 0.09 -8.22 16 12 N -0.46 -4.68 3.68 -69.76 -0.26 -4.94 16 13 C 0.10 0.68 11.22 59.85 0.67 1.35 16 14 O 0.00 0.01 7.38 16.85 0.12 0.14 16 15 C 0.09 0.97 6.33 -3.71 -0.02 0.95 16 16 C -0.13 -1.62 4.90 -26.61 -0.13 -1.75 16 17 C -0.09 -1.22 1.96 -90.58 -0.18 -1.40 16 18 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 19 C 0.16 2.87 5.18 -4.04 -0.02 2.85 16 20 N -0.73 -17.16 5.32 -59.90 -0.32 -17.48 16 21 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 25 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.99 7.03 -51.93 -0.37 0.62 16 34 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 38 H 0.10 0.94 3.80 -54.92 -0.21 0.73 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 41 H 0.09 1.37 7.15 -51.93 -0.37 1.00 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 44 H 0.38 9.30 6.85 -40.82 -0.28 9.02 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -33.04 360.41 -6.65 -39.69 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.32 Total: 5.18 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.77 Total: 3.39 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.27 Total: -55.37 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.30 Total: -15.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.04 -6.65 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184249560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.220 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds