Wall clock time and date at job start Tue Mar 31 2020 14:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50148 * 2 1 4 4 C 1.53625 * 109.63608 * 239.90233 * 2 1 3 5 5 N 1.46931 * 108.53909 * 294.86559 * 4 2 1 6 6 C 1.34779 * 120.62895 * 126.36957 * 5 4 2 7 7 O 1.21504 * 119.99889 * 4.36116 * 6 5 4 8 8 C 1.48202 * 119.99994 * 184.08730 * 6 5 4 9 9 C 1.36318 * 126.38241 * 173.94509 * 8 6 5 10 10 C 1.42349 * 104.00803 * 179.97438 * 9 8 6 11 11 O 1.21975 * 127.15099 * 179.97438 * 10 9 8 12 12 N 1.34833 * 105.69780 * 359.97438 * 10 9 8 13 13 C 1.46499 * 124.56260 * 180.02562 * 12 10 9 14 14 O 1.20921 * 110.86885 * 359.74687 * 12 10 9 15 15 C 1.46923 * 118.74085 * 306.08976 * 5 4 2 16 16 C 1.53191 * 108.77244 * 53.86527 * 15 5 4 17 17 C 1.53037 * 109.49820 * 120.06681 * 2 1 3 18 18 H 1.09003 * 109.45101 * 178.59872 * 17 2 1 19 19 C 1.53002 * 109.45839 * 298.56830 * 17 2 1 20 20 N 1.46509 * 109.46975 * 185.06668 * 19 17 2 21 21 C 1.36932 * 119.99766 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00700 * 0.02562 * 21 20 19 23 23 C 1.38819 * 119.99893 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99890 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99868 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47174 * 90.00861 * 25 23 21 27 27 H 1.48500 * 109.46849 * 210.00316 * 25 23 21 28 28 H 1.48496 * 109.47532 * 330.00237 * 25 23 21 29 29 H 1.09002 * 109.47079 * 299.93572 * 1 2 3 30 30 H 1.09002 * 109.46595 * 59.93078 * 1 2 3 31 31 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.73950 * 175.13232 * 4 2 1 33 33 H 1.09000 * 109.66664 * 54.55472 * 4 2 1 34 34 H 1.08000 * 128.00167 * 359.97438 * 9 8 6 35 35 H 1.09004 * 109.47334 * 90.00039 * 13 12 10 36 36 H 1.09004 * 109.47319 * 209.99999 * 13 12 10 37 37 H 1.09002 * 109.47583 * 330.00236 * 13 12 10 38 38 H 1.09004 * 109.58510 * 173.64584 * 15 5 4 39 39 H 1.08995 * 109.58952 * 294.07834 * 15 5 4 40 40 H 1.09000 * 109.49826 * 65.31545 * 16 15 5 41 41 H 1.09003 * 109.49750 * 185.38144 * 16 15 5 42 42 H 1.08998 * 109.47118 * 305.06210 * 19 17 2 43 43 H 1.08999 * 109.47331 * 65.06823 * 19 17 2 44 44 H 0.97001 * 119.99841 * 359.97438 * 20 19 17 45 45 H 0.96999 * 120.00287 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0463 -0.7256 -1.2518 5 7 1.6515 -2.1385 -1.1690 6 6 0.9748 -2.7226 -2.1776 7 8 0.7546 -2.1040 -3.1999 8 6 0.5045 -4.1215 -2.0420 9 6 -0.2846 -4.7983 -2.9238 10 6 -0.4388 -6.0837 -2.3318 11 8 -1.0727 -7.0272 -2.7743 12 7 0.2615 -6.0414 -1.1804 13 6 0.3817 -7.1578 -0.2394 14 8 0.7814 -4.9599 -1.0318 15 6 2.0140 -2.9040 0.0315 16 6 1.5030 -2.1555 1.2665 17 6 2.0408 -0.7228 1.2485 18 1 3.1305 -0.7441 1.2352 19 6 1.5606 0.0177 2.4984 20 7 2.1480 -0.6020 3.6889 21 6 1.8600 -0.1053 4.9320 22 1 1.1996 0.7431 5.0350 23 6 2.4161 -0.6927 6.0602 24 7 3.2205 -1.7269 5.9348 25 14 2.0227 -0.0155 7.7560 26 1 0.8212 -0.7008 8.2962 27 1 3.1756 -0.2500 8.6622 28 1 1.7589 1.4425 7.6579 29 1 -0.3633 0.5128 0.8906 30 1 -0.3632 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1328 -0.6519 -1.2983 33 1 1.6089 -0.2757 -2.1431 34 1 -0.6974 -4.4419 -3.8560 35 1 1.2487 -7.7636 -0.5030 36 1 0.5040 -6.7692 0.7717 37 1 -0.5180 -7.7713 -0.2865 38 1 1.5553 -3.8919 -0.0128 39 1 3.0979 -3.0043 0.0876 40 1 0.4132 -2.1352 1.2546 41 1 1.8475 -2.6626 2.1678 42 1 1.8685 1.0618 2.4429 43 1 0.4737 -0.0380 2.5585 44 1 2.7408 -1.3642 3.5965 45 1 3.6094 -2.1372 6.7231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184249560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:01 Heat of formation + Delta-G solvation = 13.250569 kcal Electronic energy + Delta-G solvation = -28379.035252 eV Core-core repulsion = 24401.382246 eV Total energy + Delta-G solvation = -3977.653006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.26685 -41.60951 -39.46681 -39.37326 -36.65674 -35.54970 -34.79239 -33.45446 -33.19167 -32.01975 -29.49685 -28.52414 -27.70442 -25.72395 -24.84587 -24.50267 -23.96107 -22.69844 -21.50680 -19.92839 -19.53558 -19.28934 -18.87182 -18.36962 -17.44641 -16.82108 -16.55091 -16.42189 -16.21844 -15.72349 -15.52078 -15.35018 -15.15785 -15.08844 -15.01579 -14.78400 -14.44300 -14.20069 -13.87156 -13.71724 -13.68215 -13.46515 -12.95741 -12.80425 -12.69926 -12.40908 -12.18813 -12.04835 -11.89178 -11.80972 -11.57892 -11.43727 -11.23874 -11.11355 -11.10777 -10.86510 -9.84586 -9.68333 -8.93250 -7.92716 -5.19259 -0.63282 0.47215 1.35234 1.49485 1.49630 1.52235 1.57949 1.79239 2.13145 2.58070 3.10268 3.41361 3.53891 3.72641 3.76119 3.81010 3.86327 3.99314 4.21272 4.24276 4.33108 4.33477 4.38098 4.44715 4.62162 4.65484 4.67054 4.69203 4.73595 4.77073 4.82952 4.98165 5.02339 5.11080 5.17353 5.19470 5.26989 5.29786 5.46792 5.54270 5.61655 5.98000 6.30878 6.39810 6.62767 6.88227 7.38060 8.15291 8.38779 9.30464 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.003236 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.299444 B = 8649.448439 C =10055.568962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.119 3.881 5 N -0.583 5.583 6 C 0.603 3.397 7 O -0.527 6.527 8 C 0.035 3.965 9 C -0.242 4.242 10 C 0.470 3.530 11 O -0.566 6.566 12 N -0.448 5.448 13 C 0.092 3.908 14 O 0.013 5.987 15 C 0.103 3.897 16 C -0.120 4.120 17 C -0.080 4.080 18 H 0.075 0.925 19 C 0.158 3.842 20 N -0.742 5.742 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.966 3.034 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.200 0.800 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -4.664 -15.993 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.118 0.882 4 C -0.002 4.002 5 N -0.313 5.313 6 C 0.388 3.612 7 O -0.404 6.404 8 C -0.024 4.024 9 C -0.267 4.267 10 C 0.269 3.731 11 O -0.451 6.451 12 N -0.211 5.211 13 C -0.043 4.043 14 O 0.004 5.996 15 C -0.018 4.018 16 C -0.158 4.158 17 C -0.099 4.099 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.385 5.385 21 C -0.375 4.375 22 H 0.088 0.912 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.795 3.205 26 H -0.216 1.216 27 H -0.222 1.222 28 H -0.198 1.198 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.217 0.783 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.037 0.963 44 H 0.209 0.791 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.602 -4.818 -16.287 17.183 hybrid contribution -0.058 -0.059 1.252 1.255 sum -2.660 -4.878 -15.035 16.028 Atomic orbital electron populations 1.21853 0.95035 1.01466 1.01863 1.21520 0.96382 1.00210 0.92911 0.88238 1.22047 1.01252 0.77855 0.99037 1.48136 1.52898 1.12868 1.17435 1.16846 0.78598 0.81896 0.83900 1.90861 1.58287 1.62117 1.29144 1.23322 0.99027 0.91880 0.88140 1.23422 1.05239 0.93976 1.04046 1.18491 0.82630 0.90285 0.81726 1.90936 1.46034 1.40825 1.67297 1.46561 1.45394 1.05047 1.24081 1.22580 1.06078 0.83508 0.92115 1.84302 1.60907 1.13161 1.41250 1.22359 1.02176 0.94701 0.82609 1.21849 1.01078 0.95687 0.97218 1.21225 1.00401 0.94665 0.93619 0.90703 1.20855 0.95446 0.94804 0.85752 1.42551 1.56849 1.37553 1.01521 1.19582 1.22131 1.10452 0.85325 0.91171 1.25431 1.00676 0.99117 1.01095 1.69773 1.37014 1.25774 1.29034 0.85254 0.76651 0.78099 0.80454 1.21608 1.22249 1.19783 0.92772 0.91919 0.93498 0.88599 0.88297 0.78264 0.88099 0.86469 0.87464 0.87835 0.88440 0.91818 0.91283 0.96558 0.96343 0.79082 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.39 71.98 0.60 -2.46 16 2 C -0.09 -1.80 2.72 -10.57 -0.03 -1.83 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.12 2.06 5.86 86.51 0.51 2.56 16 5 N -0.58 -11.03 2.40 -821.07 -1.97 -13.00 16 6 C 0.60 13.03 7.71 86.89 0.67 13.70 16 7 O -0.53 -13.77 16.33 -3.73 -0.06 -13.83 16 8 C 0.03 0.72 6.96 24.47 0.17 0.89 16 9 C -0.24 -5.35 10.94 22.84 0.25 -5.10 16 10 C 0.47 11.75 8.02 85.26 0.68 12.44 16 11 O -0.57 -18.05 17.84 -5.23 -0.09 -18.14 16 12 N -0.45 -8.58 3.68 -492.71 -1.82 -10.39 16 13 C 0.09 1.05 11.22 127.77 1.43 2.48 16 14 O 0.01 0.24 7.38 70.47 0.52 0.76 16 15 C 0.10 1.89 6.33 86.36 0.55 2.44 16 16 C -0.12 -2.92 4.90 30.67 0.15 -2.77 16 17 C -0.08 -2.05 1.96 -10.77 -0.02 -2.08 16 18 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 19 C 0.16 5.60 5.18 86.38 0.45 6.04 16 20 N -0.74 -34.66 5.32 -343.43 -1.83 -36.49 16 21 C -0.24 -12.95 9.99 84.04 0.84 -12.11 16 22 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.97 -56.08 13.06 21.65 0.28 -55.80 16 25 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H 0.05 1.26 6.58 -2.39 -0.02 1.24 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.06 5.97 -2.39 -0.01 1.04 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.75 7.03 -2.39 -0.02 1.73 16 34 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 1.23 8.03 -2.39 -0.02 1.21 16 38 H 0.10 1.77 3.80 -49.80 -0.19 1.58 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.63 6.33 -2.39 -0.02 1.61 16 41 H 0.07 2.03 7.15 -2.39 -0.02 2.02 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.02 0.68 6.74 -2.39 -0.02 0.67 16 44 H 0.38 18.38 6.85 -92.71 -0.63 17.75 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -70.53 360.41 3.99 -66.54 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.21 Total: 22.96 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.72 Total: 10.79 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -5.33 Total: -115.67 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: 0.37 Total: -31.22 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.53 3.99 -66.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184249560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.787 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds