Wall clock time and date at job start Tue Mar 31 2020 14:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.49867 * 2 1 4 4 C 1.53190 * 109.50256 * 239.93509 * 2 1 3 5 5 N 1.46920 * 108.78066 * 185.41678 * 4 2 1 6 6 C 1.34780 * 120.62933 * 233.63435 * 5 4 2 7 7 O 1.21496 * 120.00134 * 172.93690 * 6 5 4 8 8 C 1.48204 * 119.99865 * 352.92865 * 6 5 4 9 9 C 1.36318 * 126.38470 * 173.04235 * 8 6 5 10 10 C 1.42339 * 104.00997 * 179.97438 * 9 8 6 11 11 O 1.21978 * 127.15124 * 179.97438 * 10 9 8 12 12 N 1.34827 * 105.70212 * 0.02562 * 10 9 8 13 13 C 1.46507 * 124.56661 * 180.02562 * 12 10 9 14 14 O 1.20922 * 110.86944 * 359.69831 * 12 10 9 15 15 C 1.46923 * 118.74170 * 53.60557 * 5 4 2 16 16 C 1.53192 * 108.77402 * 306.39416 * 15 5 4 17 17 C 1.53039 * 109.49827 * 120.06425 * 2 1 3 18 18 H 1.08999 * 109.43048 * 61.27528 * 17 2 1 19 19 C 1.53005 * 109.48485 * 301.32261 * 17 2 1 20 20 N 1.46500 * 109.47115 * 174.91067 * 19 17 2 21 21 C 1.36934 * 120.00084 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99866 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00095 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99704 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99994 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47063 * 60.00291 * 25 23 21 27 27 H 1.48496 * 109.46892 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47286 * 300.00167 * 25 23 21 29 29 H 1.08998 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47016 * 300.06983 * 1 2 3 31 31 H 1.08998 * 109.47000 * 60.06613 * 1 2 3 32 32 H 1.09009 * 109.58665 * 65.62340 * 4 2 1 33 33 H 1.09002 * 109.58597 * 305.20737 * 4 2 1 34 34 H 1.07995 * 127.99785 * 359.97438 * 9 8 6 35 35 H 1.09000 * 109.47328 * 89.99789 * 13 12 10 36 36 H 1.09000 * 109.47093 * 209.99812 * 13 12 10 37 37 H 1.09000 * 109.47086 * 329.99995 * 13 12 10 38 38 H 1.08999 * 109.58629 * 186.60783 * 15 5 4 39 39 H 1.08995 * 109.70319 * 66.24691 * 15 5 4 40 40 H 1.08999 * 109.49756 * 174.58413 * 16 15 5 41 41 H 1.08997 * 109.49864 * 294.65078 * 16 15 5 42 42 H 1.08997 * 109.47136 * 294.91413 * 19 17 2 43 43 H 1.09004 * 109.47198 * 54.91336 * 19 17 2 44 44 H 0.97000 * 119.99868 * 0.02562 * 20 19 17 45 45 H 0.96999 * 119.99489 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5046 -0.8288 -1.1697 6 6 4.2812 -0.3849 -2.1779 7 8 5.4890 -0.3588 -2.0483 8 6 3.6619 0.0711 -3.4448 9 6 4.3037 0.6643 -4.4910 10 6 3.2701 0.8988 -5.4411 11 8 3.3829 1.4166 -6.5397 12 7 2.1400 0.4307 -4.8739 13 6 0.8177 0.4658 -5.5036 14 8 2.3660 -0.0279 -3.7780 15 6 4.1053 -1.4267 0.0304 16 6 3.5709 -0.6954 1.2658 17 6 2.0408 -0.7227 1.2485 18 1 1.6961 -1.7567 1.2355 19 6 1.5043 -0.0227 2.4988 20 7 1.8922 -0.7838 3.6890 21 6 1.5219 -0.3459 4.9325 22 1 0.9435 0.5603 5.0358 23 6 1.8899 -1.0668 6.0602 24 7 2.5952 -2.1709 5.9343 25 14 1.3840 -0.4698 7.7565 26 1 -0.0973 -0.4078 7.8380 27 1 1.8980 -1.4092 8.7854 28 1 1.9500 0.8824 7.9945 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.7638 -0.1573 -2.1390 33 1 1.6053 -1.7212 -1.2985 34 1 5.3536 0.9015 -4.5787 35 1 0.6633 -0.4489 -6.0760 36 1 0.0505 0.5462 -4.7334 37 1 0.7553 1.3261 -6.1699 38 1 5.1896 -1.3246 -0.0141 39 1 3.8397 -2.4823 0.0874 40 1 3.9334 -1.1903 2.1668 41 1 3.9164 0.3383 1.2545 42 1 1.9204 0.9829 2.5590 43 1 0.4173 0.0366 2.4438 44 1 2.4120 -1.5975 3.5962 45 1 2.8520 -2.6748 6.7224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184249561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:04 Heat of formation + Delta-G solvation = 29.334583 kcal Electronic energy + Delta-G solvation = -28049.831027 eV Core-core repulsion = 24072.875476 eV Total energy + Delta-G solvation = -3976.955551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.45722 -40.55680 -38.48623 -38.35134 -35.26051 -34.67260 -33.54192 -32.59651 -32.28502 -30.60708 -28.51950 -27.02378 -26.84452 -24.57778 -23.91221 -23.32813 -22.04110 -21.53429 -20.40152 -19.66234 -18.77458 -18.43513 -17.58362 -17.05342 -16.59521 -15.66620 -15.57590 -15.23570 -14.92192 -14.69051 -14.40704 -14.14076 -14.09975 -13.90727 -13.78332 -13.63341 -13.47379 -13.29601 -13.07066 -12.72350 -12.46248 -12.13279 -11.94794 -11.72469 -11.09041 -11.00130 -10.85420 -10.83131 -10.54378 -10.44038 -10.34886 -10.28270 -10.24020 -10.02822 -9.69009 -8.96088 -8.88700 -8.83944 -6.95055 -5.80375 -3.08669 0.20680 1.20381 2.24257 2.36536 2.66105 2.96645 3.41387 3.46158 3.46901 3.95463 4.31126 4.51251 4.57060 4.64105 4.65736 4.70546 4.73679 4.85099 4.96433 5.06335 5.17546 5.18950 5.33134 5.45548 5.50977 5.53561 5.56230 5.64983 5.73706 5.81762 5.83827 5.88413 6.07989 6.15539 6.20122 6.26858 6.39989 6.57455 6.73131 6.83550 6.89532 7.23958 7.51391 7.66072 7.66434 8.38971 9.50113 10.07723 10.42002 11.42477 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.002620 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.035998 B =10685.113055 C =11381.766071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.103 3.897 5 N -0.591 5.591 6 C 0.598 3.402 7 O -0.500 6.500 8 C 0.035 3.965 9 C -0.237 4.237 10 C 0.482 3.518 11 O -0.524 6.524 12 N -0.457 5.457 13 C 0.106 3.894 14 O -0.001 6.001 15 C 0.110 3.890 16 C -0.126 4.126 17 C -0.090 4.090 18 H 0.074 0.926 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.193 0.807 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.024 0.976 44 H 0.383 0.617 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 2.330 -21.696 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.019 4.019 5 N -0.322 5.322 6 C 0.381 3.619 7 O -0.375 6.375 8 C -0.022 4.022 9 C -0.262 4.262 10 C 0.280 3.720 11 O -0.405 6.405 12 N -0.222 5.222 13 C -0.031 4.031 14 O -0.011 6.011 15 C -0.010 4.010 16 C -0.164 4.164 17 C -0.109 4.109 18 H 0.093 0.907 19 C 0.030 3.970 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.210 0.790 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.042 0.958 44 H 0.217 0.783 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.428 2.611 -22.025 22.442 hybrid contribution -0.157 0.023 1.019 1.031 sum -3.586 2.634 -21.006 21.472 Atomic orbital electron populations 1.21837 0.94014 1.02406 1.02206 1.21475 0.96371 0.99992 0.93862 0.90631 1.22299 0.78291 1.01945 0.99413 1.48138 1.07581 1.58646 1.17866 1.16876 0.85981 0.78480 0.80529 1.90886 1.12506 1.54465 1.79642 1.23481 0.81391 1.00033 0.97337 1.23336 1.02647 1.06573 0.93648 1.18330 0.82569 0.82381 0.88715 1.90970 1.82572 1.46758 1.20183 1.46206 1.12109 1.55996 1.07917 1.22149 0.77837 1.04975 0.98121 1.84260 1.26688 1.69281 1.20838 1.21927 0.99587 0.97009 0.82525 1.21957 0.95757 1.01465 0.97231 1.21371 0.94867 1.00278 0.94403 0.90727 1.20742 0.96633 0.94084 0.85589 1.42358 1.65531 1.28893 1.00821 1.19164 1.27904 1.06220 0.83825 0.91344 1.24724 1.00857 0.97509 0.97822 1.69637 1.42671 1.17193 1.28750 0.86278 0.78032 0.77688 0.84247 1.21305 1.21683 1.21290 0.92283 0.91000 0.93088 0.88910 0.90264 0.78991 0.90095 0.88721 0.87663 0.88585 0.90431 0.88825 0.91526 0.96547 0.95802 0.78281 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.82 37.16 0.33 -1.07 16 2 C -0.10 -1.04 2.41 -90.50 -0.22 -1.25 16 3 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 4 C 0.10 0.94 5.42 -3.72 -0.02 0.92 16 5 N -0.59 -6.45 2.97 -173.76 -0.52 -6.97 16 6 C 0.60 7.12 7.70 -12.16 -0.09 7.02 16 7 O -0.50 -7.31 16.33 5.37 0.09 -7.22 16 8 C 0.04 0.37 6.87 -36.18 -0.25 0.12 16 9 C -0.24 -2.57 10.94 -38.70 -0.42 -2.99 16 10 C 0.48 5.67 8.02 -14.66 -0.12 5.55 16 11 O -0.52 -7.79 17.84 4.94 0.09 -7.70 16 12 N -0.46 -4.03 3.68 -69.77 -0.26 -4.29 16 13 C 0.11 0.49 11.22 59.85 0.67 1.16 16 14 O 0.00 -0.01 7.57 16.83 0.13 0.12 16 15 C 0.11 1.29 6.44 -3.71 -0.02 1.27 16 16 C -0.13 -1.74 5.25 -26.61 -0.14 -1.88 16 17 C -0.09 -1.25 1.73 -90.58 -0.16 -1.40 16 18 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.16 2.87 5.41 -4.04 -0.02 2.85 16 20 N -0.73 -17.43 5.32 -59.91 -0.32 -17.75 16 21 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 25 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.79 6.30 -51.93 -0.33 0.46 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.75 4.26 -52.67 -0.22 0.52 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.19 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 38 H 0.10 1.18 7.00 -51.93 -0.36 0.82 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.44 6.14 -51.93 -0.32 0.12 16 44 H 0.38 9.52 6.85 -40.82 -0.28 9.24 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -33.65 364.72 -6.80 -40.45 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.50 Total: 4.47 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -0.71 Total: 3.17 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.37 Total: -55.73 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.30 Total: -14.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.65 -6.80 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184249561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.785 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds